RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CRIP1P50238 77 aa3.03□□□□□ -1.93
CCDC88A-209ENST00000456975 SMIM2Q9BVW6 85 aa3.03□□□□□ -1.93
CCDC88A-209ENST00000456975 KLK9Q9UKQ9 250 aa3.03□□□□□ -1.93
CCDC88A-209ENST00000456975 IGKV1OR2-108A0A075B7D4 117 aa3.02□□□□□ -1.93
CCDC88A-209ENST00000456975 TLX1NBP0CAT3 122 aa3.02□□□□□ -1.93
CCDC88A-209ENST00000456975 LY6EQ16553 131 aa3.02□□□□□ -1.93
CCDC88A-209ENST00000456975 KRTAP25-1Q3LHN0 102 aa3.02□□□□□ -1.93
CCDC88A-209ENST00000456975 LCE5AQ5TCM9 118 aa3.02□□□□□ -1.93
CCDC88A-209ENST00000456975 Q6ZTI0 123 aa3.02□□□□□ -1.93
CCDC88A-209ENST00000456975 COX7B2Q8TF08 81 aa3.02□□□□□ -1.93
CCDC88A-209ENST00000456975 TNCP24821 2201 aa3.01□□□□□ -1.93
CCDC88A-209ENST00000456975 IGHV3-53P01767 116 aa3.01□□□□□ -1.93
CCDC88A-209ENST00000456975 RPL39P5Q59GN2 51 aa3.01□□□□□ -1.93
CCDC88A-209ENST00000456975 CAMK2N1Q7Z7J9 78 aa3.01□□□□□ -1.93
CCDC88A-209ENST00000456975 KRTAP10-3P60369 221 aa3.01□□□□□ -1.93
CCDC88A-209ENST00000456975 NTM-AS1Q6ZSK4 140 aa3.01□□□□□ -1.93
CCDC88A-209ENST00000456975 C5orf56Q8N8D9 126 aa3.01□□□□□ -1.93
CCDC88A-209ENST00000456975 RNF5Q99942 180 aa3.01□□□□□ -1.93
CCDC88A-209ENST00000456975 H3BPC8 53 aa3□□□□□ -1.93
CCDC88A-209ENST00000456975 IGKV3-20P01619 116 aa3□□□□□ -1.93
CCDC88A-209ENST00000456975 SPINK9Q5DT21 86 aa3□□□□□ -1.93
CCDC88A-209ENST00000456975 KRTAP26-1Q6PEX3 210 aa3□□□□□ -1.93
CCDC88A-209ENST00000456975 WFDC10AQ9H1F0 79 aa3□□□□□ -1.93
CCDC88A-209ENST00000456975 RYR2Q92736 4967 aa3□□□□□ -1.93
CCDC88A-209ENST00000456975 LOC110117498A0A087WWA1 95 aa3□□□□□ -1.93
CCDC88A-209ENST00000456975 IGKV2-29A2NJV5 120 aaPredicted RBP3□□□□□ -1.93
CCDC88A-209ENST00000456975 KRTAP29-1A8MX34 341 aaPredicted RBP3□□□□□ -1.93
CCDC88A-209ENST00000456975 MRGPRG-AS1Q2M3A8 158 aa3□□□□□ -1.93
CCDC88A-209ENST00000456975 C15orf56Q8N910 161 aa3□□□□□ -1.93
CCDC88A-209ENST00000456975 PDE6HQ13956 83 aa2.99□□□□□ -1.93
CCDC88A-209ENST00000456975 C10orf113Q5VZT2 155 aa2.99□□□□□ -1.93
CCDC88A-209ENST00000456975 LINC00308Q8TCZ7 52 aa2.99□□□□□ -1.93
CCDC88A-209ENST00000456975 NDUFA4O00483 81 aa2.99□□□□□ -1.93
CCDC88A-209ENST00000456975 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-209ENST00000456975 LINC00959A0A1B0GUT2 108 aa2.98□□□□□ -1.93
CCDC88A-209ENST00000456975 H0Y9P7 68 aa2.98□□□□□ -1.93
CCDC88A-209ENST00000456975 RNASE3P12724 160 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-209ENST00000456975 KRTAP9-3Q9BYQ3 159 aa2.98□□□□□ -1.93
CCDC88A-209ENST00000456975 GIG44P09565 113 aaPredicted RBP2.97□□□□□ -1.93
CCDC88A-209ENST00000456975 C1orf137Q5JT78 98 aa2.97□□□□□ -1.93
CCDC88A-209ENST00000456975 DYNC2H1Q8NCM8 4307 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-209ENST00000456975 KLK9Q2XQG4 91 aa2.97□□□□□ -1.93
CCDC88A-209ENST00000456975 C10orf99Q6UWK7 81 aa2.97□□□□□ -1.93
CCDC88A-209ENST00000456975 C9orf163Q8N9P6 203 aa2.97□□□□□ -1.93
CCDC88A-209ENST00000456975 TMEM167AQ8TBQ9 72 aa2.97□□□□□ -1.93
CCDC88A-209ENST00000456975 SPRR4Q96PI1 79 aa2.97□□□□□ -1.93
CCDC88A-209ENST00000456975 IGLV4-60A0A075B6I1 120 aa2.96□□□□□ -1.94
CCDC88A-209ENST00000456975 IGKV4-1P06312 121 aa2.96□□□□□ -1.94
CCDC88A-209ENST00000456975 SPATA8Q6RVD6 105 aa2.96□□□□□ -1.94
CCDC88A-209ENST00000456975 COL7A1Q02388 2944 aa2.96□□□□□ -1.94
CCDC88A-209ENST00000456975 IGKV3-7A0A075B6H7 116 aa2.96□□□□□ -1.94
CCDC88A-209ENST00000456975 IGHV3-64A0A075B6Q5 118 aa2.96□□□□□ -1.94
CCDC88A-209ENST00000456975 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.96□□□□□ -1.94
CCDC88A-209ENST00000456975 G3V318 75 aa2.96□□□□□ -1.94
CCDC88A-209ENST00000456975 PANO1I0J062 215 aa2.96□□□□□ -1.94
CCDC88A-209ENST00000456975 INSP01308 110 aa2.96□□□□□ -1.94
CCDC88A-209ENST00000456975 ERHP84090 104 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-209ENST00000456975 C14orf177Q52M58 125 aa2.96□□□□□ -1.94
CCDC88A-209ENST00000456975 NOTCH3Q9UM47 2321 aa2.95□□□□□ -1.94
CCDC88A-209ENST00000456975 SACSQ9NZJ4 4579 aa2.95□□□□□ -1.94
CCDC88A-209ENST00000456975 H3BUA1 57 aa2.95□□□□□ -1.94
CCDC88A-209ENST00000456975 K7EIL1 84 aa2.95□□□□□ -1.94
CCDC88A-209ENST00000456975 CCL18P55774 89 aa2.95□□□□□ -1.94
CCDC88A-209ENST00000456975 COA5Q86WW8 74 aa2.95□□□□□ -1.94
CCDC88A-209ENST00000456975 TYMSOSQ8TAI1 123 aa2.95□□□□□ -1.94
CCDC88A-209ENST00000456975 DMAC1Q96GE9 116 aa2.95□□□□□ -1.94
CCDC88A-209ENST00000456975 DNAH9Q9NYC9 4486 aa2.95□□□□□ -1.94
CCDC88A-209ENST00000456975 HYDINQ4G0P3 5121 aa2.95□□□□□ -1.94
CCDC88A-209ENST00000456975 ETDCA0A1B0GVM5 59 aa2.95□□□□□ -1.94
CCDC88A-209ENST00000456975 ZNF861PO60384 105 aa2.95□□□□□ -1.94
CCDC88A-209ENST00000456975 DEFB114Q30KQ6 69 aa2.95□□□□□ -1.94
CCDC88A-209ENST00000456975 C10orf55Q5SWW7 151 aa2.95□□□□□ -1.94
CCDC88A-209ENST00000456975 PCLOQ9Y6V0 5065 aa2.94□□□□□ -1.94
CCDC88A-209ENST00000456975 TENM3Q9P273 2699 aa2.94□□□□□ -1.94
CCDC88A-209ENST00000456975 IGLV11-55A0A075B6I3 123 aa2.94□□□□□ -1.94
CCDC88A-209ENST00000456975 TRGV2A0A075B6R0 118 aa2.94□□□□□ -1.94
CCDC88A-209ENST00000456975 TRGV4A0A0C4DH28 118 aa2.94□□□□□ -1.94
CCDC88A-209ENST00000456975 IGKV3OR2-268A0A0C4DH90 116 aa2.94□□□□□ -1.94
CCDC88A-209ENST00000456975 NUPR2A6NF83 97 aa2.94□□□□□ -1.94
CCDC88A-209ENST00000456975 MGPP08493 103 aa2.94□□□□□ -1.94
CCDC88A-209ENST00000456975 C4orf3Q8WVX3 66 aa2.94□□□□□ -1.94
CCDC88A-209ENST00000456975 HMCN1Q96RW7 5635 aa2.94□□□□□ -1.94
CCDC88A-209ENST00000456975 NDUFA1O15239 70 aa2.93□□□□□ -1.94
CCDC88A-209ENST00000456975 LINC00612Q8N6U2 182 aa2.93□□□□□ -1.94
CCDC88A-209ENST00000456975 SMIM11BQ8TCY0 68 aa2.93□□□□□ -1.94
CCDC88A-209ENST00000456975 TRBV6-4A0A1B0GX49 114 aa2.93□□□□□ -1.94
CCDC88A-209ENST00000456975 Q5W150 140 aa2.93□□□□□ -1.94
CCDC88A-209ENST00000456975 USMG5Q96IX5 58 aa2.93□□□□□ -1.94
CCDC88A-209ENST00000456975 KCNQ1DNQ9H478 68 aa2.93□□□□□ -1.94
CCDC88A-209ENST00000456975 TENM2Q9NT68 2774 aa2.93□□□□□ -1.94
CCDC88A-209ENST00000456975 A0A0J9YWU9 116 aa2.92□□□□□ -1.94
CCDC88A-209ENST00000456975 H3BQ85 93 aa2.92□□□□□ -1.94
CCDC88A-209ENST00000456975 PRCDQ00LT1 54 aa2.92□□□□□ -1.94
CCDC88A-209ENST00000456975 WT1-ASQ06250 92 aa2.92□□□□□ -1.94
CCDC88A-209ENST00000456975 M0R2N4 97 aa2.92□□□□□ -1.94
CCDC88A-209ENST00000456975 UQCR11O14957 56 aa2.92□□□□□ -1.94
CCDC88A-209ENST00000456975 DNAH1Q9P2D7 4330 aa2.92□□□□□ -1.94
CCDC88A-209ENST00000456975 DNAH3Q8TD57 4116 aa2.92□□□□□ -1.94
CCDC88A-209ENST00000456975 APELAP0DMC3 54 aa2.91□□□□□ -1.94
CCDC88A-209ENST00000456975 DEFB136Q30KP8 78 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms