RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 IGLV5-48A0A075B6I7 105 aa7.63□□□□□ -1.19
MSH6-204ENST00000445503 PHF5AQ7RTV0 110 aaKnown RBP7.63□□□□□ -1.19
MSH6-204ENST00000445503 IGLV9-49A0A0B4J1Y8 123 aa7.63□□□□□ -1.19
MSH6-204ENST00000445503 B9D2Q9BPU9 175 aa7.63□□□□□ -1.19
MSH6-204ENST00000445503 ZNF706Q9Y5V0 76 aaPredicted RBP7.63□□□□□ -1.19
MSH6-204ENST00000445503 PRR15LQ9BU68 103 aa7.62□□□□□ -1.19
MSH6-204ENST00000445503 NDUFB1O75438 58 aa7.62□□□□□ -1.19
MSH6-204ENST00000445503 IGFL1Q6UW32 110 aa7.6□□□□□ -1.19
MSH6-204ENST00000445503 CASC2Q6XLA1 102 aa7.6□□□□□ -1.19
MSH6-204ENST00000445503 FP248Q71RG6 208 aaPredicted RBP7.6□□□□□ -1.19
MSH6-204ENST00000445503 FBN1P35555 2871 aaKnown RBP7.6□□□□□ -1.19
MSH6-204ENST00000445503 EPM2AB3EWF7 344 aa7.6□□□□□ -1.19
MSH6-204ENST00000445503 FAM229BQ4G0N7 80 aa7.59□□□□□ -1.19
MSH6-204ENST00000445503 TLX1NBP0CAT3 122 aa7.59□□□□□ -1.2
MSH6-204ENST00000445503 TRRAPQ9Y4A5 3859 aa7.58□□□□□ -1.2
MSH6-204ENST00000445503 DSCR10P59022 87 aa7.58□□□□□ -1.2
MSH6-204ENST00000445503 C14orf177Q52M58 125 aa7.57□□□□□ -1.2
MSH6-204ENST00000445503 H0Y9P7 68 aa7.57□□□□□ -1.2
MSH6-204ENST00000445503 AKAP9Q99996 3911 aa7.57□□□□□ -1.2
MSH6-204ENST00000445503 PLA2G2DQ9UNK4 145 aa7.56□□□□□ -1.2
MSH6-204ENST00000445503 STAB2Q8WWQ8 2551 aa7.55□□□□□ -1.2
MSH6-204ENST00000445503 A0A1B0GW54 56 aa7.55□□□□□ -1.2
MSH6-204ENST00000445503 C16orf90A8MZG2 172 aa7.55□□□□□ -1.2
MSH6-204ENST00000445503 C1orf64Q8NEQ6 169 aa7.55□□□□□ -1.2
MSH6-204ENST00000445503 PCOTHQ58A44 107 aa7.54□□□□□ -1.2
MSH6-204ENST00000445503 RBM12B-AS1Q9P1G2 102 aa7.54□□□□□ -1.2
MSH6-204ENST00000445503 ANK3Q12955 4377 aaKnown RBP7.54□□□□□ -1.2
MSH6-204ENST00000445503 K7EIL1 84 aa7.53□□□□□ -1.2
MSH6-204ENST00000445503 SPINK6Q6UWN8 80 aa7.53□□□□□ -1.2
MSH6-204ENST00000445503 SPRR1AP35321 89 aa7.52□□□□□ -1.21
MSH6-204ENST00000445503 IGLV5-37A0A075B6J1 123 aa7.51□□□□□ -1.21
MSH6-204ENST00000445503 SPRR4Q96PI1 79 aa7.51□□□□□ -1.21
MSH6-204ENST00000445503 KMT2BQ9UMN6 2715 aaPredicted RBP7.5□□□□□ -1.21
MSH6-204ENST00000445503 KRTAP7-1Q8IUC3 87 aa7.49□□□□□ -1.21
MSH6-204ENST00000445503 IGHV6-1A0A0B4J1U7 121 aa7.49□□□□□ -1.21
MSH6-204ENST00000445503 KRTAP4-16G5E9R7 235 aaPredicted RBP7.49□□□□□ -1.21
MSH6-204ENST00000445503 FLG2Q5D862 2391 aaPredicted RBP7.49□□□□□ -1.21
MSH6-204ENST00000445503 TNP2Q05952 138 aa7.48□□□□□ -1.21
MSH6-204ENST00000445503 KTN1-AS1Q86SY8 53 aa7.48□□□□□ -1.21
MSH6-204ENST00000445503 KRTAP1-5Q9BYS1 174 aa7.47□□□□□ -1.21
MSH6-204ENST00000445503 hDV103S1A0JD37 113 aa7.46□□□□□ -1.22
MSH6-204ENST00000445503 RETNLBQ9BQ08 111 aa7.46□□□□□ -1.22
MSH6-204ENST00000445503 A8MUN3 132 aa7.45□□□□□ -1.22
MSH6-204ENST00000445503 PRR15Q8IV56 129 aa7.44□□□□□ -1.22
MSH6-204ENST00000445503 A8MWP4 228 aa7.43□□□□□ -1.22
MSH6-204ENST00000445503 ANAPC11Q9NYG5 84 aa7.42□□□□□ -1.22
MSH6-204ENST00000445503 TRAV22A0A0B4J277 110 aa7.41□□□□□ -1.22
MSH6-204ENST00000445503 MOBPQ13875 183 aa7.41□□□□□ -1.22
MSH6-204ENST00000445503 LCA10Q71F78 164 aa7.4□□□□□ -1.22
MSH6-204ENST00000445503 NBDYA0A0U1RRE5 68 aa7.39□□□□□ -1.23
MSH6-204ENST00000445503 CNBPP62633 177 aaKnown RBP7.39□□□□□ -1.23
MSH6-204ENST00000445503 CIRBP-AS1Q8TBR5 109 aa7.39□□□□□ -1.23
MSH6-204ENST00000445503 C9orf163Q8N9P6 203 aa7.38□□□□□ -1.23
MSH6-204ENST00000445503 KRTAP11-1Q8IUC1 163 aa7.38□□□□□ -1.23
MSH6-204ENST00000445503 TENM2Q9NT68 2774 aa7.35□□□□□ -1.23
MSH6-204ENST00000445503 APLNQ9ULZ1 77 aa7.35□□□□□ -1.23
MSH6-204ENST00000445503 SPAG11AQ6PDA7 123 aa7.34□□□□□ -1.23
MSH6-204ENST00000445503 NUPR2A6NF83 97 aa7.34□□□□□ -1.24
MSH6-204ENST00000445503 C7orf65Q6ZTY9 151 aa7.34□□□□□ -1.24
MSH6-204ENST00000445503 SRRM2Q9UQ35 2752 aaKnown RBP7.33□□□□□ -1.24
MSH6-204ENST00000445503 PANO1I0J062 215 aa7.32□□□□□ -1.24
MSH6-204ENST00000445503 COA5Q86WW8 74 aa7.32□□□□□ -1.24
MSH6-204ENST00000445503 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.32□□□□□ -1.24
MSH6-204ENST00000445503 H3BPC8 53 aa7.31□□□□□ -1.24
MSH6-204ENST00000445503 ZCCHC13Q8WW36 166 aaKnown RBP7.31□□□□□ -1.24
MSH6-204ENST00000445503 IGLV5-52A0A0A0MRZ9 124 aa7.31□□□□□ -1.24
MSH6-204ENST00000445503 LIMD2Q9BT23 127 aa7.3□□□□□ -1.24
MSH6-204ENST00000445503 C8orf87E5RJ46 101 aa7.3□□□□□ -1.24
MSH6-204ENST00000445503 LY6G6CO95867 125 aa7.3□□□□□ -1.24
MSH6-204ENST00000445503 CYP4F30PQ9H0H9 118 aa7.3□□□□□ -1.24
MSH6-204ENST00000445503 LINC00472Q9H8W2 130 aa7.3□□□□□ -1.24
MSH6-204ENST00000445503 C8orf17Q9NRJ1 99 aa7.3□□□□□ -1.24
MSH6-204ENST00000445503 Q1T7F1 81 aa7.3□□□□□ -1.24
MSH6-204ENST00000445503 IGLV8-61A0A075B6I0 122 aa7.29□□□□□ -1.24
MSH6-204ENST00000445503 RTL8CO15255 209 aa7.29□□□□□ -1.24
MSH6-204ENST00000445503 TP53AIP1Q9HCN2 124 aa7.27□□□□□ -1.24
MSH6-204ENST00000445503 PSORS1C2Q9UIG4 136 aa7.27□□□□□ -1.25
MSH6-204ENST00000445503 MMP24-AS1A0A0U1RRL7 71 aa7.27□□□□□ -1.25
MSH6-204ENST00000445503 KRTAP29-1A8MX34 341 aaPredicted RBP7.26□□□□□ -1.25
MSH6-204ENST00000445503 LCE6AA0A183 80 aa7.26□□□□□ -1.25
MSH6-204ENST00000445503 ATP11AUNQ6ZP68 121 aa7.25□□□□□ -1.25
MSH6-204ENST00000445503 MRPL34Q9BQ48 92 aaKnown RBP7.25□□□□□ -1.25
MSH6-204ENST00000445503 A0A087WTM6 91 aa7.24□□□□□ -1.25
MSH6-204ENST00000445503 A0A1B0GVX0 72 aa7.24□□□□□ -1.25
MSH6-204ENST00000445503 PRAC1Q96KF2 57 aa7.24□□□□□ -1.25
MSH6-204ENST00000445503 SPRR1BP22528 89 aa7.23□□□□□ -1.25
MSH6-204ENST00000445503 SPANXA2-OT1Q8N9U9 137 aa7.23□□□□□ -1.25
MSH6-204ENST00000445503 LINC01554Q52M75 96 aa7.23□□□□□ -1.25
MSH6-204ENST00000445503 C1orf134Q5TEV5 83 aa7.21□□□□□ -1.25
MSH6-204ENST00000445503 Q8N9P0 234 aaPredicted RBP7.21□□□□□ -1.25
MSH6-204ENST00000445503 A0A0A0MQY5 61 aa7.2□□□□□ -1.26
MSH6-204ENST00000445503 ZNF861PO60384 105 aa7.2□□□□□ -1.26
MSH6-204ENST00000445503 PRR26Q8N8Z3 221 aa7.19□□□□□ -1.26
MSH6-204ENST00000445503 Q5VV11 94 aa7.19□□□□□ -1.26
MSH6-204ENST00000445503 SPACA4Q8TDM5 124 aa7.19□□□□□ -1.26
MSH6-204ENST00000445503 A8MU10 97 aa7.19□□□□□ -1.26
MSH6-204ENST00000445503 SPINT4Q6UDR6 99 aa7.18□□□□□ -1.26
MSH6-204ENST00000445503 IGLV7-46A0A075B6I9 117 aa7.17□□□□□ -1.26
MSH6-204ENST00000445503 CSMD3Q7Z407 3707 aa7.17□□□□□ -1.26
MSH6-204ENST00000445503 A0A087X002 238 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms