RNA–Protein interactions for RNA: ENST00000439977.6

HERPUD1-204, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERPUD1, Length 2,946 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-204ENST00000439977 SPRR4Q96PI1 79 aa8.53□□□□□ -1.04
HERPUD1-204ENST00000439977 C16orf90A8MZG2 172 aa8.52□□□□□ -1.05
HERPUD1-204ENST00000439977 A0A087WSZ3 146 aa8.52□□□□□ -1.05
HERPUD1-204ENST00000439977 A0A0U1RQV1 116 aa8.52□□□□□ -1.05
HERPUD1-204ENST00000439977 NDUFC1O43677 76 aa8.51□□□□□ -1.05
HERPUD1-204ENST00000439977 RPL37AP61513 92 aaKnown RBP8.5□□□□□ -1.05
HERPUD1-204ENST00000439977 FP248Q71RG6 208 aaPredicted RBP8.49□□□□□ -1.05
HERPUD1-204ENST00000439977 WFDC13Q8IUB5 93 aa8.48□□□□□ -1.05
HERPUD1-204ENST00000439977 UBE2AP49459 152 aa8.48□□□□□ -1.05
HERPUD1-204ENST00000439977 FAM229BQ4G0N7 80 aa8.47□□□□□ -1.05
HERPUD1-204ENST00000439977 A0A1B0GW54 56 aa8.46□□□□□ -1.06
HERPUD1-204ENST00000439977 CNBPP62633 177 aaKnown RBP8.46□□□□□ -1.06
HERPUD1-204ENST00000439977 MPLKIPQ8TAP9 179 aa8.45□□□□□ -1.06
HERPUD1-204ENST00000439977 PRR4Q16378 134 aa8.45□□□□□ -1.06
HERPUD1-204ENST00000439977 LRCOL1A6NCL2 159 aa8.44□□□□□ -1.06
HERPUD1-204ENST00000439977 PANO1I0J062 215 aa8.44□□□□□ -1.06
HERPUD1-204ENST00000439977 HCG22E2RYF7 251 aa8.44□□□□□ -1.06
HERPUD1-204ENST00000439977 APLNQ9ULZ1 77 aa8.44□□□□□ -1.06
HERPUD1-204ENST00000439977 PLECQ15149 4684 aaKnown RBP8.44□□□□□ -1.06
HERPUD1-204ENST00000439977 SMIM26A0A096LP01 95 aa8.43□□□□□ -1.06
HERPUD1-204ENST00000439977 LINC00336Q6ZUF6 198 aa8.4□□□□□ -1.06
HERPUD1-204ENST00000439977 ATP5EP56381 51 aaPredicted RBP8.39□□□□□ -1.07
HERPUD1-204ENST00000439977 C9orf163Q8N9P6 203 aa8.37□□□□□ -1.07
HERPUD1-204ENST00000439977 MDFIQ99750 246 aa8.36□□□□□ -1.07
HERPUD1-204ENST00000439977 IGLV8-61A0A075B6I0 122 aa8.35□□□□□ -1.07
HERPUD1-204ENST00000439977 LCE6AA0A183 80 aa8.35□□□□□ -1.07
HERPUD1-204ENST00000439977 C14orf177Q52M58 125 aa8.35□□□□□ -1.07
HERPUD1-204ENST00000439977 NBDYA0A0U1RRE5 68 aa8.34□□□□□ -1.07
HERPUD1-204ENST00000439977 IGLV9-49A0A0B4J1Y8 123 aa8.34□□□□□ -1.07
HERPUD1-204ENST00000439977 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.34□□□□□ -1.07
HERPUD1-204ENST00000439977 ZCCHC13Q8WW36 166 aaKnown RBP8.33□□□□□ -1.08
HERPUD1-204ENST00000439977 LINC00208Q96KT6 92 aa8.33□□□□□ -1.08
HERPUD1-204ENST00000439977 H0Y9J4 135 aa8.32□□□□□ -1.08
HERPUD1-204ENST00000439977 C1orf64Q8NEQ6 169 aa8.32□□□□□ -1.08
HERPUD1-204ENST00000439977 B9D2Q9BPU9 175 aa8.32□□□□□ -1.08
HERPUD1-204ENST00000439977 CASC2Q6XLA1 102 aa8.31□□□□□ -1.08
HERPUD1-204ENST00000439977 FRAS1Q86XX4 4008 aa8.31□□□□□ -1.08
HERPUD1-204ENST00000439977 STARD9Q9P2P6 4700 aa8.31□□□□□ -1.08
HERPUD1-204ENST00000439977 ANAPC11Q9NYG5 84 aa8.3□□□□□ -1.08
HERPUD1-204ENST00000439977 Q6ZRN7 208 aaPredicted RBP8.29□□□□□ -1.08
HERPUD1-204ENST00000439977 PRR15Q8IV56 129 aa8.29□□□□□ -1.08
HERPUD1-204ENST00000439977 LINC00472Q9H8W2 130 aa8.29□□□□□ -1.08
HERPUD1-204ENST00000439977 TGP01266 2768 aa8.29□□□□□ -1.08
HERPUD1-204ENST00000439977 hDV103S1A0JD37 113 aa8.28□□□□□ -1.08
HERPUD1-204ENST00000439977 KRTAP29-1A8MX34 341 aaPredicted RBP8.28□□□□□ -1.08
HERPUD1-204ENST00000439977 SPRR1BP22528 89 aa8.28□□□□□ -1.08
HERPUD1-204ENST00000439977 MP68P56378 58 aa8.28□□□□□ -1.08
HERPUD1-204ENST00000439977 BRK1Q8WUW1 75 aa8.28□□□□□ -1.08
HERPUD1-204ENST00000439977 KMT2AQ03164 3969 aa8.27□□□□□ -1.08
HERPUD1-204ENST00000439977 A8MWP4 228 aa8.26□□□□□ -1.09
HERPUD1-204ENST00000439977 DYNC2H1Q8NCM8 4307 aaKnown RBP8.25□□□□□ -1.09
HERPUD1-204ENST00000439977 H0Y9P7 68 aa8.25□□□□□ -1.09
HERPUD1-204ENST00000439977 PRKDCP78527 4128 aaKnown RBP8.25□□□□□ -1.09
HERPUD1-204ENST00000439977 KRTAP13-1Q8IUC0 172 aa8.24□□□□□ -1.09
HERPUD1-204ENST00000439977 TRAV22A0A0B4J277 110 aa8.23□□□□□ -1.09
HERPUD1-204ENST00000439977 SPACA4Q8TDM5 124 aa8.23□□□□□ -1.09
HERPUD1-204ENST00000439977 NUPR2A6NF83 97 aa8.22□□□□□ -1.09
HERPUD1-204ENST00000439977 PRO0628Q9UI54 55 aa8.22□□□□□ -1.09
HERPUD1-204ENST00000439977 A0A087WTM6 91 aa8.21□□□□□ -1.1
HERPUD1-204ENST00000439977 PSPHP1O15172 72 aa8.21□□□□□ -1.1
HERPUD1-204ENST00000439977 MEGF8Q7Z7M0 2845 aa8.2□□□□□ -1.1
HERPUD1-204ENST00000439977 DNAH2Q9P225 4427 aa8.19□□□□□ -1.1
HERPUD1-204ENST00000439977 MOBPQ13875 183 aa8.19□□□□□ -1.1
HERPUD1-204ENST00000439977 PSORS1C2Q9UIG4 136 aa8.19□□□□□ -1.1
HERPUD1-204ENST00000439977 MMP24-AS1A0A0U1RRL7 71 aa8.19□□□□□ -1.1
HERPUD1-204ENST00000439977 PKIGQ9Y2B9 76 aa8.19□□□□□ -1.1
HERPUD1-204ENST00000439977 HECTD4Q9Y4D8 3996 aa8.18□□□□□ -1.1
HERPUD1-204ENST00000439977 RTL8CO15255 209 aa8.18□□□□□ -1.1
HERPUD1-204ENST00000439977 NDUFB1O75438 58 aa8.18□□□□□ -1.1
HERPUD1-204ENST00000439977 DNAH8Q96JB1 4490 aa8.17□□□□□ -1.1
HERPUD1-204ENST00000439977 VPS13DQ5THJ4 4388 aa8.17□□□□□ -1.1
HERPUD1-204ENST00000439977 Q96NJ1 140 aa8.17□□□□□ -1.1
HERPUD1-204ENST00000439977 IGHV6-1A0A0B4J1U7 121 aa8.16□□□□□ -1.1
HERPUD1-204ENST00000439977 PCOTHQ58A44 107 aa8.15□□□□□ -1.1
HERPUD1-204ENST00000439977 CYP4F30PQ9H0H9 118 aa8.15□□□□□ -1.1
HERPUD1-204ENST00000439977 NDUFS5O43920 106 aa8.15□□□□□ -1.11
HERPUD1-204ENST00000439977 FBN3Q75N90 2809 aa8.14□□□□□ -1.11
HERPUD1-204ENST00000439977 DNAH17Q9UFH2 4485 aa8.14□□□□□ -1.11
HERPUD1-204ENST00000439977 WWC2-AS2Q96NR7 200 aa8.13□□□□□ -1.11
HERPUD1-204ENST00000439977 IGLV5-52A0A0A0MRZ9 124 aa8.13□□□□□ -1.11
HERPUD1-204ENST00000439977 A0A087X002 238 aa8.12□□□□□ -1.11
HERPUD1-204ENST00000439977 NOTCH2NLQ7Z3S9 236 aa8.12□□□□□ -1.11
HERPUD1-204ENST00000439977 SPINK6Q6UWN8 80 aa8.12□□□□□ -1.11
HERPUD1-204ENST00000439977 DNHD1Q96M86 4753 aa8.11□□□□□ -1.11
HERPUD1-204ENST00000439977 Q1T7F1 81 aa8.1□□□□□ -1.11
HERPUD1-204ENST00000439977 C8orf17Q9NRJ1 99 aa8.1□□□□□ -1.11
HERPUD1-204ENST00000439977 A8MUN3 132 aa8.09□□□□□ -1.11
HERPUD1-204ENST00000439977 LINC00483Q53H64 154 aa8.09□□□□□ -1.11
HERPUD1-204ENST00000439977 ZNF861PO60384 105 aa8.09□□□□□ -1.12
HERPUD1-204ENST00000439977 DNAH6Q9C0G6 4158 aa8.08□□□□□ -1.12
HERPUD1-204ENST00000439977 CDK2AP2O75956 126 aa8.07□□□□□ -1.12
HERPUD1-204ENST00000439977 H3BPC8 53 aa8.06□□□□□ -1.12
HERPUD1-204ENST00000439977 CIRBP-AS1Q8TBR5 109 aa8.06□□□□□ -1.12
HERPUD1-204ENST00000439977 ZNF706Q9Y5V0 76 aaPredicted RBP8.06□□□□□ -1.12
HERPUD1-204ENST00000439977 A0A1B0GVX0 72 aa8.06□□□□□ -1.12
HERPUD1-204ENST00000439977 Q6ZR54 194 aa8.05□□□□□ -1.12
HERPUD1-204ENST00000439977 PLAC8Q9NZF1 115 aa8.05□□□□□ -1.12
HERPUD1-204ENST00000439977 LY6G6CO95867 125 aa8.04□□□□□ -1.12
HERPUD1-204ENST00000439977 SPANXA2-OT1Q8N9U9 137 aa8.04□□□□□ -1.12
HERPUD1-204ENST00000439977 A8MU10 97 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms