RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 H3BNG1 76 aa5.79□□□□□ -1.48
COPB1-202ENST00000439561 LINC00588Q9Y4M8 146 aa5.78□□□□□ -1.48
COPB1-202ENST00000439561 TENM3Q9P273 2699 aa5.78□□□□□ -1.48
COPB1-202ENST00000439561 F8WDY8 70 aa5.78□□□□□ -1.48
COPB1-202ENST00000439561 NSD1Q96L73 2696 aaPredicted RBP5.77□□□□□ -1.49
COPB1-202ENST00000439561 CDK2AP2O75956 126 aa5.77□□□□□ -1.49
COPB1-202ENST00000439561 SPRR4Q96PI1 79 aa5.77□□□□□ -1.49
COPB1-202ENST00000439561 MGAM2Q2M2H8 2515 aa5.77□□□□□ -1.49
COPB1-202ENST00000439561 IGLV9-49A0A0B4J1Y8 123 aa5.77□□□□□ -1.49
COPB1-202ENST00000439561 CHTF8P0CG12 524 aa5.76□□□□□ -1.49
COPB1-202ENST00000439561 KRTAP10-11P60412 298 aa5.76□□□□□ -1.49
COPB1-202ENST00000439561 Q1T7F1 81 aa5.76□□□□□ -1.49
COPB1-202ENST00000439561 DNAH10OSP0CZ25 163 aa5.75□□□□□ -1.49
COPB1-202ENST00000439561 TNP2Q05952 138 aa5.75□□□□□ -1.49
COPB1-202ENST00000439561 PHF5AQ7RTV0 110 aaKnown RBP5.75□□□□□ -1.49
COPB1-202ENST00000439561 PRR15Q8IV56 129 aa5.75□□□□□ -1.49
COPB1-202ENST00000439561 A8MU10 97 aa5.74□□□□□ -1.49
COPB1-202ENST00000439561 TLX1NBP0CAT3 122 aa5.73□□□□□ -1.49
COPB1-202ENST00000439561 SPAG11AQ6PDA7 123 aa5.73□□□□□ -1.49
COPB1-202ENST00000439561 TENM4Q6N022 2769 aa5.73□□□□□ -1.49
COPB1-202ENST00000439561 SPRR1AP35321 89 aa5.73□□□□□ -1.49
COPB1-202ENST00000439561 KRTAP4-16G5E9R7 235 aaPredicted RBP5.72□□□□□ -1.49
COPB1-202ENST00000439561 ZCCHC13Q8WW36 166 aaKnown RBP5.72□□□□□ -1.49
COPB1-202ENST00000439561 LIMD2Q9BT23 127 aa5.72□□□□□ -1.49
COPB1-202ENST00000439561 PLA2G2DQ9UNK4 145 aa5.72□□□□□ -1.49
COPB1-202ENST00000439561 TRRAPQ9Y4A5 3859 aa5.71□□□□□ -1.49
COPB1-202ENST00000439561 IGHV6-1A0A0B4J1U7 121 aa5.71□□□□□ -1.5
COPB1-202ENST00000439561 CYP4F30PQ9H0H9 118 aa5.71□□□□□ -1.5
COPB1-202ENST00000439561 KRTAP7-1Q8IUC3 87 aa5.71□□□□□ -1.5
COPB1-202ENST00000439561 SPINK6Q6UWN8 80 aa5.7□□□□□ -1.5
COPB1-202ENST00000439561 COA5Q86WW8 74 aa5.7□□□□□ -1.5
COPB1-202ENST00000439561 OTOGQ6ZRI0 2925 aa5.7□□□□□ -1.5
COPB1-202ENST00000439561 A8MWP4 228 aa5.7□□□□□ -1.5
COPB1-202ENST00000439561 Q5VV11 94 aa5.69□□□□□ -1.5
COPB1-202ENST00000439561 IGLV5-37A0A075B6J1 123 aa5.69□□□□□ -1.5
COPB1-202ENST00000439561 LCE6AA0A183 80 aa5.68□□□□□ -1.5
COPB1-202ENST00000439561 CNBPP62633 177 aaKnown RBP5.68□□□□□ -1.5
COPB1-202ENST00000439561 C16orf90A8MZG2 172 aa5.67□□□□□ -1.5
COPB1-202ENST00000439561 Q8N9P0 234 aaPredicted RBP5.67□□□□□ -1.5
COPB1-202ENST00000439561 FBN1P35555 2871 aaKnown RBP5.67□□□□□ -1.5
COPB1-202ENST00000439561 H3BPC8 53 aa5.65□□□□□ -1.51
COPB1-202ENST00000439561 SRRM2Q9UQ35 2752 aaKnown RBP5.64□□□□□ -1.51
COPB1-202ENST00000439561 SPANXA2-OT1Q8N9U9 137 aa5.63□□□□□ -1.51
COPB1-202ENST00000439561 C14orf177Q52M58 125 aa5.62□□□□□ -1.51
COPB1-202ENST00000439561 KRTAP29-1A8MX34 341 aaPredicted RBP5.62□□□□□ -1.51
COPB1-202ENST00000439561 RETNLBQ9BQ08 111 aa5.61□□□□□ -1.51
COPB1-202ENST00000439561 ANAPC11Q9NYG5 84 aa5.61□□□□□ -1.51
COPB1-202ENST00000439561 STAB2Q8WWQ8 2551 aa5.61□□□□□ -1.51
COPB1-202ENST00000439561 LOC101927531A0A1B0GV80 90 aa5.61□□□□□ -1.51
COPB1-202ENST00000439561 MOBPQ13875 183 aa5.61□□□□□ -1.51
COPB1-202ENST00000439561 KRTAP24-1Q3LI83 254 aa5.61□□□□□ -1.51
COPB1-202ENST00000439561 KRTAP11-1Q8IUC1 163 aa5.6□□□□□ -1.51
COPB1-202ENST00000439561 MMP24-AS1A0A0U1RRL7 71 aa5.6□□□□□ -1.51
COPB1-202ENST00000439561 CD164Q04900 197 aa5.6□□□□□ -1.51
COPB1-202ENST00000439561 LINC00472Q9H8W2 130 aa5.6□□□□□ -1.51
COPB1-202ENST00000439561 KTN1-AS1Q86SY8 53 aa5.59□□□□□ -1.51
COPB1-202ENST00000439561 KRTAP1-5Q9BYS1 174 aa5.59□□□□□ -1.51
COPB1-202ENST00000439561 ANK3Q12955 4377 aaKnown RBP5.59□□□□□ -1.51
COPB1-202ENST00000439561 ATP11AUNQ6ZP68 121 aa5.58□□□□□ -1.52
COPB1-202ENST00000439561 C8orf17Q9NRJ1 99 aa5.58□□□□□ -1.52
COPB1-202ENST00000439561 LCA10Q71F78 164 aa5.58□□□□□ -1.52
COPB1-202ENST00000439561 TP53AIP1Q9HCN2 124 aa5.58□□□□□ -1.52
COPB1-202ENST00000439561 IGLV8-61A0A075B6I0 122 aa5.57□□□□□ -1.52
COPB1-202ENST00000439561 IGLV7-46A0A075B6I9 117 aa5.57□□□□□ -1.52
COPB1-202ENST00000439561 PRR26Q8N8Z3 221 aa5.57□□□□□ -1.52
COPB1-202ENST00000439561 CIRBP-AS1Q8TBR5 109 aa5.56□□□□□ -1.52
COPB1-202ENST00000439561 C9orf163Q8N9P6 203 aa5.56□□□□□ -1.52
COPB1-202ENST00000439561 RBM12B-AS1Q9P1G2 102 aa5.56□□□□□ -1.52
COPB1-202ENST00000439561 KMT2BQ9UMN6 2715 aaPredicted RBP5.56□□□□□ -1.52
COPB1-202ENST00000439561 Q75L30 129 aa5.55□□□□□ -1.52
COPB1-202ENST00000439561 MRPL34Q9BQ48 92 aaKnown RBP5.54□□□□□ -1.52
COPB1-202ENST00000439561 SPINK7P58062 85 aa5.54□□□□□ -1.52
COPB1-202ENST00000439561 CDC42SE1Q9NRR8 79 aa5.54□□□□□ -1.52
COPB1-202ENST00000439561 A0A1B0GVX0 72 aa5.53□□□□□ -1.52
COPB1-202ENST00000439561 K7EIL1 84 aa5.53□□□□□ -1.52
COPB1-202ENST00000439561 PANO1I0J062 215 aa5.52□□□□□ -1.53
COPB1-202ENST00000439561 TENM2Q9NT68 2774 aa5.52□□□□□ -1.53
COPB1-202ENST00000439561 CSMD3Q7Z407 3707 aa5.52□□□□□ -1.53
COPB1-202ENST00000439561 HRES1P13985 223 aa5.52□□□□□ -1.53
COPB1-202ENST00000439561 ZNF706Q9Y5V0 76 aaPredicted RBP5.51□□□□□ -1.53
COPB1-202ENST00000439561 SPRR1BP22528 89 aa5.5□□□□□ -1.53
COPB1-202ENST00000439561 C7orf65Q6ZTY9 151 aa5.49□□□□□ -1.53
COPB1-202ENST00000439561 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.49□□□□□ -1.53
COPB1-202ENST00000439561 A0A087X002 238 aa5.49□□□□□ -1.53
COPB1-202ENST00000439561 NOTCH2NLQ7Z3S9 236 aa5.49□□□□□ -1.53
COPB1-202ENST00000439561 LINC01558Q9Y6Z2 57 aa5.49□□□□□ -1.53
COPB1-202ENST00000439561 COL7A1Q02388 2944 aa5.49□□□□□ -1.53
COPB1-202ENST00000439561 MDFIQ99750 246 aa5.49□□□□□ -1.53
COPB1-202ENST00000439561 NBDYA0A0U1RRE5 68 aa5.47□□□□□ -1.53
COPB1-202ENST00000439561 A0A1B0GU69 56 aa5.47□□□□□ -1.53
COPB1-202ENST00000439561 ACYP2P14621 99 aa5.47□□□□□ -1.53
COPB1-202ENST00000439561 PRAC1Q96KF2 57 aa5.47□□□□□ -1.53
COPB1-202ENST00000439561 PSORS1C2Q9UIG4 136 aa5.46□□□□□ -1.54
COPB1-202ENST00000439561 SPINK1P00995 79 aa5.45□□□□□ -1.54
COPB1-202ENST00000439561 IGKV2D-30A0A075B6S6 120 aa5.44□□□□□ -1.54
COPB1-202ENST00000439561 A6NN06 94 aa5.44□□□□□ -1.54
COPB1-202ENST00000439561 IGKV2-30P06310 120 aa5.44□□□□□ -1.54
COPB1-202ENST00000439561 Q96NJ1 140 aa5.43□□□□□ -1.54
COPB1-202ENST00000439561 APLNQ9ULZ1 77 aa5.43□□□□□ -1.54
COPB1-202ENST00000439561 Q6ZR54 194 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms