RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 TRIOO75962 3097 aa3.58□□□□□ -1.84
MCF2-205ENST00000437564 RPL37P61927 97 aaKnown RBP3.57□□□□□ -1.84
MCF2-205ENST00000437564 PLAC4Q8WY50 150 aa3.57□□□□□ -1.84
MCF2-205ENST00000437564 GPR179Q6PRD1 2367 aa3.57□□□□□ -1.84
MCF2-205ENST00000437564 ASH1LQ9NR48 2969 aaKnown RBP3.57□□□□□ -1.84
MCF2-205ENST00000437564 C2CD3Q4AC94 2353 aa3.57□□□□□ -1.84
MCF2-205ENST00000437564 ROS1P08922 2347 aa3.56□□□□□ -1.84
MCF2-205ENST00000437564 PIEZO2Q9H5I5 2752 aa3.56□□□□□ -1.84
MCF2-205ENST00000437564 A0A096LPF7 62 aa3.56□□□□□ -1.84
MCF2-205ENST00000437564 FLG2Q5D862 2391 aaPredicted RBP3.56□□□□□ -1.84
MCF2-205ENST00000437564 DMDP11532 3685 aa3.55□□□□□ -1.84
MCF2-205ENST00000437564 AKAP13Q12802 2813 aa3.55□□□□□ -1.84
MCF2-205ENST00000437564 TENM2Q9NT68 2774 aa3.55□□□□□ -1.84
MCF2-205ENST00000437564 GVINP1Q7Z2Y8 2422 aa3.54□□□□□ -1.84
MCF2-205ENST00000437564 SPEGQ15772 3267 aa3.54□□□□□ -1.84
MCF2-205ENST00000437564 DCHS1Q96JQ0 3298 aa3.53□□□□□ -1.84
MCF2-205ENST00000437564 MAP1AP78559 2803 aaPredicted RBP3.53□□□□□ -1.85
MCF2-205ENST00000437564 SPTBN4Q9H254 2564 aa3.52□□□□□ -1.85
MCF2-205ENST00000437564 LAMA1P25391 3075 aa3.52□□□□□ -1.85
MCF2-205ENST00000437564 PRLHP81277 87 aa3.51□□□□□ -1.85
MCF2-205ENST00000437564 BOD1L1Q8NFC6 3051 aa3.51□□□□□ -1.85
MCF2-205ENST00000437564 C10orf95Q9H7T3 257 aa3.51□□□□□ -1.85
MCF2-205ENST00000437564 ITPR1Q14643 2758 aa3.5□□□□□ -1.85
MCF2-205ENST00000437564 NCOR1O75376 2440 aa3.5□□□□□ -1.85
MCF2-205ENST00000437564 C14orf177Q52M58 125 aa3.5□□□□□ -1.85
MCF2-205ENST00000437564 C10orf99Q6UWK7 81 aa3.5□□□□□ -1.85
MCF2-205ENST00000437564 KRTAP7-1Q8IUC3 87 aa3.5□□□□□ -1.85
MCF2-205ENST00000437564 FREM2Q5SZK8 3169 aa3.5□□□□□ -1.85
MCF2-205ENST00000437564 HTTP42858 3142 aa3.49□□□□□ -1.85
MCF2-205ENST00000437564 R4GN34 69 aa3.49□□□□□ -1.85
MCF2-205ENST00000437564 VCANP13611 3396 aa3.49□□□□□ -1.85
MCF2-205ENST00000437564 SPINK1P00995 79 aa3.48□□□□□ -1.85
MCF2-205ENST00000437564 CELSR2Q9HCU4 2923 aa3.48□□□□□ -1.85
MCF2-205ENST00000437564 TYMSOSQ8TAI1 123 aa3.47□□□□□ -1.85
MCF2-205ENST00000437564 DSPP15924 2871 aaKnown RBP3.47□□□□□ -1.85
MCF2-205ENST00000437564 SPACA4Q8TDM5 124 aa3.47□□□□□ -1.85
MCF2-205ENST00000437564 REV3LO60673 3130 aa3.47□□□□□ -1.85
MCF2-205ENST00000437564 LAMA3Q16787 3333 aa3.47□□□□□ -1.85
MCF2-205ENST00000437564 EP300Q09472 2414 aaPredicted RBP3.47□□□□□ -1.85
MCF2-205ENST00000437564 TACC2O95359 2948 aa3.46□□□□□ -1.85
MCF2-205ENST00000437564 WDFY3Q8IZQ1 3526 aa3.46□□□□□ -1.86
MCF2-205ENST00000437564 NOTCH3Q9UM47 2321 aa3.46□□□□□ -1.86
MCF2-205ENST00000437564 EP400Q96L91 3159 aa3.45□□□□□ -1.86
MCF2-205ENST00000437564 INE1O15225 51 aa3.45□□□□□ -1.86
MCF2-205ENST00000437564 Q6ZRN7 208 aaPredicted RBP3.45□□□□□ -1.86
MCF2-205ENST00000437564 BRCA2P51587 3418 aa3.45□□□□□ -1.86
MCF2-205ENST00000437564 TRANK1O15050 2925 aa3.44□□□□□ -1.86
MCF2-205ENST00000437564 A0A1W2PPR1 153 aa3.43□□□□□ -1.86
MCF2-205ENST00000437564 COL12A1Q99715 3063 aa3.43□□□□□ -1.86
MCF2-205ENST00000437564 DMXL2Q8TDJ6 3036 aa3.43□□□□□ -1.86
MCF2-205ENST00000437564 CREBBPQ92793 2442 aa3.43□□□□□ -1.86
MCF2-205ENST00000437564 H3BNG1 76 aa3.43□□□□□ -1.86
MCF2-205ENST00000437564 ZFHX4Q86UP3 3567 aa3.42□□□□□ -1.86
MCF2-205ENST00000437564 CACNA1HO95180 2353 aa3.42□□□□□ -1.86
MCF2-205ENST00000437564 C5orf42Q9H799 3197 aa3.42□□□□□ -1.86
MCF2-205ENST00000437564 A0A096LNI7 61 aa3.42□□□□□ -1.86
MCF2-205ENST00000437564 SPENQ96T58 3664 aaKnown RBP3.41□□□□□ -1.86
MCF2-205ENST00000437564 LRBAP50851 2863 aa3.41□□□□□ -1.86
MCF2-205ENST00000437564 LINC01556Q5JQF7 62 aa3.4□□□□□ -1.86
MCF2-205ENST00000437564 UBE2DNLQ8IWF7 75 aa3.4□□□□□ -1.86
MCF2-205ENST00000437564 UBR5O95071 2799 aaPredicted RBP3.4□□□□□ -1.87
MCF2-205ENST00000437564 SPG11Q96JI7 2443 aa3.4□□□□□ -1.87
MCF2-205ENST00000437564 PRRC2CQ9Y520 2896 aaKnown RBP3.38□□□□□ -1.87
MCF2-205ENST00000437564 DEFB123Q8N688 67 aa3.38□□□□□ -1.87
MCF2-205ENST00000437564 CSMD1Q96PZ7 3565 aa3.38□□□□□ -1.87
MCF2-205ENST00000437564 CHD9Q3L8U1 2897 aa3.38□□□□□ -1.87
MCF2-205ENST00000437564 CDH23Q9H251 3354 aa3.38□□□□□ -1.87
MCF2-205ENST00000437564 SPART-AS1P0CW21 52 aa3.38□□□□□ -1.87
MCF2-205ENST00000437564 RIF1Q5UIP0 2472 aaKnown RBP3.37□□□□□ -1.87
MCF2-205ENST00000437564 NCOR2Q9Y618 2525 aa3.37□□□□□ -1.87
MCF2-205ENST00000437564 CRYBG3Q68DQ2 2970 aa3.36□□□□□ -1.87
MCF2-205ENST00000437564 CELSR3Q9NYQ7 3312 aa3.36□□□□□ -1.87
MCF2-205ENST00000437564 LOC400499M0QZD8 3231 aa3.36□□□□□ -1.87
MCF2-205ENST00000437564 KRTAP13-1Q8IUC0 172 aa3.36□□□□□ -1.87
MCF2-205ENST00000437564 S4R3F8 94 aa3.35□□□□□ -1.87
MCF2-205ENST00000437564 DMXL1Q9Y485 3027 aa3.35□□□□□ -1.87
MCF2-205ENST00000437564 ATMQ13315 3056 aa3.34□□□□□ -1.87
MCF2-205ENST00000437564 NF1P21359 2839 aa3.34□□□□□ -1.87
MCF2-205ENST00000437564 HIVEP2P31629 2446 aa3.34□□□□□ -1.88
MCF2-205ENST00000437564 ANKHD1Q8IWZ3 2542 aaKnown RBP3.33□□□□□ -1.88
MCF2-205ENST00000437564 SPINK6Q6UWN8 80 aa3.33□□□□□ -1.88
MCF2-205ENST00000437564 AKAP9Q99996 3911 aa3.33□□□□□ -1.88
MCF2-205ENST00000437564 APLNQ9ULZ1 77 aa3.32□□□□□ -1.88
MCF2-205ENST00000437564 CSPG4Q6UVK1 2322 aa3.32□□□□□ -1.88
MCF2-205ENST00000437564 HTN3P15516 51 aa3.31□□□□□ -1.88
MCF2-205ENST00000437564 KRTAP12-2P59991 146 aa3.31□□□□□ -1.88
MCF2-205ENST00000437564 SMG1Q96Q15 3661 aaKnown RBP3.29□□□□□ -1.88
MCF2-205ENST00000437564 DEFB124Q8NES8 71 aa3.29□□□□□ -1.88
MCF2-205ENST00000437564 CELSR1Q9NYQ6 3014 aa3.29□□□□□ -1.88
MCF2-205ENST00000437564 LAMA5O15230 3695 aa3.29□□□□□ -1.88
MCF2-205ENST00000437564 APCP25054 2843 aa3.28□□□□□ -1.88
MCF2-205ENST00000437564 ATRXP46100 2492 aa3.28□□□□□ -1.88
MCF2-205ENST00000437564 VWFP04275 2813 aa3.28□□□□□ -1.88
MCF2-205ENST00000437564 FBN1P35555 2871 aaKnown RBP3.28□□□□□ -1.89
MCF2-205ENST00000437564 OTOGLQ3ZCN5 2332 aa3.27□□□□□ -1.89
MCF2-205ENST00000437564 A0A0D9SG42 100 aa3.27□□□□□ -1.89
MCF2-205ENST00000437564 NBASA2RRP1 2371 aa3.27□□□□□ -1.89
MCF2-205ENST00000437564 ASPMQ8IZT6 3477 aa3.26□□□□□ -1.89
MCF2-205ENST00000437564 ZNF462Q96JM2 2506 aa3.26□□□□□ -1.89
MCF2-205ENST00000437564 SPTAN1Q13813 2472 aaKnown RBP3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms