RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 TRGC2P03986 189 aa8.35□□□□□ -1.07
CHCHD3-202ENST00000423635 CLEC2BQ92478 149 aa8.35□□□□□ -1.07
CHCHD3-202ENST00000423635 IGFL1Q6UW32 110 aa8.34□□□□□ -1.07
CHCHD3-202ENST00000423635 A6NDN8 102 aa8.33□□□□□ -1.08
CHCHD3-202ENST00000423635 KRTAP6-3Q3LI67 103 aa8.33□□□□□ -1.08
CHCHD3-202ENST00000423635 NDUFA5Q16718 116 aa8.32□□□□□ -1.08
CHCHD3-202ENST00000423635 LST1O00453 97 aa8.31□□□□□ -1.08
CHCHD3-202ENST00000423635 TTTY13Q9BZ97 58 aa8.31□□□□□ -1.08
CHCHD3-202ENST00000423635 TRAV13-2A0A0B4J235 113 aa8.29□□□□□ -1.08
CHCHD3-202ENST00000423635 IFITM1P13164 125 aa8.29□□□□□ -1.08
CHCHD3-202ENST00000423635 OCIAD2Q56VL3 154 aa8.29□□□□□ -1.08
CHCHD3-202ENST00000423635 COPS9Q8WXC6 57 aa8.29□□□□□ -1.08
CHCHD3-202ENST00000423635 FAM236DA0A1B0GTK5 79 aa8.29□□□□□ -1.08
CHCHD3-202ENST00000423635 SYS1-DBNDD2H3BUS1 97 aa8.29□□□□□ -1.08
CHCHD3-202ENST00000423635 FAM236CP0DP71 79 aa8.29□□□□□ -1.08
CHCHD3-202ENST00000423635 SMIM11BQ8TCY0 68 aa8.29□□□□□ -1.08
CHCHD3-202ENST00000423635 MPLKIPQ8TAP9 179 aa8.28□□□□□ -1.08
CHCHD3-202ENST00000423635 KRTAP16-1A8MUX0 517 aa8.27□□□□□ -1.09
CHCHD3-202ENST00000423635 LINC01545Q5VT33 79 aa8.26□□□□□ -1.09
CHCHD3-202ENST00000423635 LINC00575Q6W349 94 aa8.26□□□□□ -1.09
CHCHD3-202ENST00000423635 SLC7A5P1Q8MH63 180 aa8.26□□□□□ -1.09
CHCHD3-202ENST00000423635 Q6ZQY7 126 aa8.25□□□□□ -1.09
CHCHD3-202ENST00000423635 Q6ZVH6 145 aa8.25□□□□□ -1.09
CHCHD3-202ENST00000423635 MUSTN1Q8IVN3 82 aa8.24□□□□□ -1.09
CHCHD3-202ENST00000423635 RBM12B-AS1Q9P1G2 102 aa8.24□□□□□ -1.09
CHCHD3-202ENST00000423635 VAMP3Q15836 100 aa8.23□□□□□ -1.09
CHCHD3-202ENST00000423635 SCGB1D4Q6XE38 83 aa8.23□□□□□ -1.09
CHCHD3-202ENST00000423635 hADV29S1A0JD25 119 aa8.22□□□□□ -1.09
CHCHD3-202ENST00000423635 HRES1P13985 223 aa8.22□□□□□ -1.09
CHCHD3-202ENST00000423635 PET117Q6UWS5 81 aa8.21□□□□□ -1.1
CHCHD3-202ENST00000423635 SS18L2Q9UHA2 77 aa8.2□□□□□ -1.1
CHCHD3-202ENST00000423635 NEBP20929 6669 aa8.2□□□□□ -1.1
CHCHD3-202ENST00000423635 PPDPFLQ8WWR9 84 aa8.18□□□□□ -1.1
CHCHD3-202ENST00000423635 SCGB1D1O95968 90 aa8.16□□□□□ -1.1
CHCHD3-202ENST00000423635 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.16□□□□□ -1.1
CHCHD3-202ENST00000423635 DSCR10P59022 87 aa8.15□□□□□ -1.1
CHCHD3-202ENST00000423635 NOTCH2NLQ7Z3S9 236 aa8.15□□□□□ -1.1
CHCHD3-202ENST00000423635 SNHG12Q9BXW3 62 aa8.15□□□□□ -1.1
CHCHD3-202ENST00000423635 H3BUT2 72 aa8.14□□□□□ -1.11
CHCHD3-202ENST00000423635 GHRHP01286 108 aa8.14□□□□□ -1.11
CHCHD3-202ENST00000423635 LOC100996750A0A140TA64 210 aa8.13□□□□□ -1.11
CHCHD3-202ENST00000423635 ANKRD39Q53RE8 183 aa8.13□□□□□ -1.11
CHCHD3-202ENST00000423635 KRTAP4-6Q9BYQ5 205 aa8.13□□□□□ -1.11
CHCHD3-202ENST00000423635 TEN1Q86WV5 123 aa8.12□□□□□ -1.11
CHCHD3-202ENST00000423635 COLCA2A8K830 154 aa8.09□□□□□ -1.11
CHCHD3-202ENST00000423635 C3orf79P0CE67 100 aa8.09□□□□□ -1.11
CHCHD3-202ENST00000423635 LINC00313P59037 77 aa8.09□□□□□ -1.11
CHCHD3-202ENST00000423635 A0A087WSZ3 146 aa8.07□□□□□ -1.12
CHCHD3-202ENST00000423635 MTURNQ8N3F0 131 aa8.06□□□□□ -1.12
CHCHD3-202ENST00000423635 MUC12Q9UKN1 5478 aa8.06□□□□□ -1.12
CHCHD3-202ENST00000423635 A8MWP4 228 aa8.03□□□□□ -1.12
CHCHD3-202ENST00000423635 HIST1H2BKO60814 126 aa8.03□□□□□ -1.12
CHCHD3-202ENST00000423635 HIST1H2BJP06899 126 aa8.03□□□□□ -1.12
CHCHD3-202ENST00000423635 HIST1H2BOP23527 126 aa8.03□□□□□ -1.12
CHCHD3-202ENST00000423635 HIST1H2BBP33778 126 aa8.03□□□□□ -1.12
CHCHD3-202ENST00000423635 HIST1H2BDP58876 126 aa8.03□□□□□ -1.12
CHCHD3-202ENST00000423635 HIST1H2BCP62807 126 aa8.03□□□□□ -1.12
CHCHD3-202ENST00000423635 HIST2H2BEQ16778 126 aa8.03□□□□□ -1.12
CHCHD3-202ENST00000423635 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.03□□□□□ -1.12
CHCHD3-202ENST00000423635 HIST1H2BHQ93079 126 aa8.03□□□□□ -1.12
CHCHD3-202ENST00000423635 HIST1H2BNQ99877 126 aa8.03□□□□□ -1.12
CHCHD3-202ENST00000423635 HIST1H2BMQ99879 126 aa8.03□□□□□ -1.12
CHCHD3-202ENST00000423635 BVES-AS1Q5T3Y7 98 aa8.03□□□□□ -1.12
CHCHD3-202ENST00000423635 KRTDAPP60985 99 aa8.01□□□□□ -1.13
CHCHD3-202ENST00000423635 SIGMAR1Q99720 223 aa8.01□□□□□ -1.13
CHCHD3-202ENST00000423635 NDUFV3P56181 108 aaKnown RBP7.99□□□□□ -1.13
CHCHD3-202ENST00000423635 Q8N9P0 234 aaPredicted RBP7.99□□□□□ -1.13
CHCHD3-202ENST00000423635 ATOH7Q8N100 152 aa7.98□□□□□ -1.13
CHCHD3-202ENST00000423635 C12orf57Q99622 126 aa7.98□□□□□ -1.13
CHCHD3-202ENST00000423635 IGKV4-1P06312 121 aa7.97□□□□□ -1.13
CHCHD3-202ENST00000423635 TMEM238LA0A1B0GVL6 79 aa7.94□□□□□ -1.14
CHCHD3-202ENST00000423635 KRTAP20-1Q3LI63 56 aa7.94□□□□□ -1.14
CHCHD3-202ENST00000423635 A0A1W2PNM2 257 aa7.93□□□□□ -1.14
CHCHD3-202ENST00000423635 H3BMG7 143 aa7.93□□□□□ -1.14
CHCHD3-202ENST00000423635 SNRPEP62304 92 aaKnown RBP7.93□□□□□ -1.14
CHCHD3-202ENST00000423635 SPINK7P58062 85 aa7.91□□□□□ -1.14
CHCHD3-202ENST00000423635 COA6Q5JTJ3 125 aaKnown RBP7.91□□□□□ -1.14
CHCHD3-202ENST00000423635 SNCGO76070 127 aa7.9□□□□□ -1.14
CHCHD3-202ENST00000423635 LINC00472Q9H8W2 130 aa7.88□□□□□ -1.15
CHCHD3-202ENST00000423635 IGHV6-1A0A0B4J1U7 121 aa7.87□□□□□ -1.15
CHCHD3-202ENST00000423635 TRBV7-4A0A0J9YYF1 115 aa7.86□□□□□ -1.15
CHCHD3-202ENST00000423635 H0YGX0 51 aa7.86□□□□□ -1.15
CHCHD3-202ENST00000423635 ZCCHC13Q8WW36 166 aaKnown RBP7.86□□□□□ -1.15
CHCHD3-202ENST00000423635 FAM218AQ96MZ4 157 aa7.86□□□□□ -1.15
CHCHD3-202ENST00000423635 DEFB116Q30KQ4 102 aa7.85□□□□□ -1.15
CHCHD3-202ENST00000423635 C8orf87E5RJ46 101 aa7.82□□□□□ -1.16
CHCHD3-202ENST00000423635 FABP2P12104 132 aa7.82□□□□□ -1.16
CHCHD3-202ENST00000423635 RAB37Q96AX2 223 aa7.81□□□□□ -1.16
CHCHD3-202ENST00000423635 ANKRD29Q8N6D5 301 aa7.8□□□□□ -1.16
CHCHD3-202ENST00000423635 A0A1B0GX51 115 aa7.79□□□□□ -1.16
CHCHD3-202ENST00000423635 WFDC13Q8IUB5 93 aa7.78□□□□□ -1.16
CHCHD3-202ENST00000423635 HIST1H4GQ99525 98 aa7.78□□□□□ -1.16
CHCHD3-202ENST00000423635 A0A1B0GVX0 72 aa7.78□□□□□ -1.16
CHCHD3-202ENST00000423635 HSBP1L1C9JCN9 74 aa7.76□□□□□ -1.17
CHCHD3-202ENST00000423635 A6NN06 94 aa7.75□□□□□ -1.17
CHCHD3-202ENST00000423635 MDN1Q9NU22 5596 aa7.74□□□□□ -1.17
CHCHD3-202ENST00000423635 KRTAP5-9P26371 169 aa7.73□□□□□ -1.17
CHCHD3-202ENST00000423635 KMT2DO14686 5537 aa7.71□□□□□ -1.17
CHCHD3-202ENST00000423635 A0A0B4J2C4 111 aa7.71□□□□□ -1.18
CHCHD3-202ENST00000423635 TRACP01848 142 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms