RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 KRTAP4-5Q9BYR2 181 aa9.42□□□□□ -0.9
USP4-203ENST00000415188 Q9BRP9 147 aa9.41□□□□□ -0.9
USP4-203ENST00000415188 REG3GQ6UW15 175 aa9.4□□□□□ -0.9
USP4-203ENST00000415188 PSCAO43653 123 aa9.4□□□□□ -0.91
USP4-203ENST00000415188 KRTAP10-2P60368 255 aa9.38□□□□□ -0.91
USP4-203ENST00000415188 DEFB105AQ8NG35 78 aa9.38□□□□□ -0.91
USP4-203ENST00000415188 FUSP35637 526 aaKnown RBP eCLIP9.37□□□□□ -0.91
USP4-203ENST00000415188 CDK2AP2O75956 126 aa9.36□□□□□ -0.91
USP4-203ENST00000415188 TRAV7A0A075B6U4 112 aa9.35□□□□□ -0.91
USP4-203ENST00000415188 A0A096LNI7 61 aa9.35□□□□□ -0.91
USP4-203ENST00000415188 UBE2BP63146 152 aa9.35□□□□□ -0.91
USP4-203ENST00000415188 NREPQ16612 68 aa9.35□□□□□ -0.91
USP4-203ENST00000415188 Q6ZRN7 208 aaPredicted RBP9.35□□□□□ -0.91
USP4-203ENST00000415188 TMEM258P61165 79 aa9.33□□□□□ -0.92
USP4-203ENST00000415188 C1orf137Q5JT78 98 aa9.32□□□□□ -0.92
USP4-203ENST00000415188 Q8NBF4 154 aa9.32□□□□□ -0.92
USP4-203ENST00000415188 ST20-AS1Q8NBB2 130 aa9.31□□□□□ -0.92
USP4-203ENST00000415188 ERC2-IT1O76042 136 aa9.3□□□□□ -0.92
USP4-203ENST00000415188 SPRR4Q96PI1 79 aa9.3□□□□□ -0.92
USP4-203ENST00000415188 IGKV2-24A0A0C4DH68 120 aa9.29□□□□□ -0.92
USP4-203ENST00000415188 A0A1W2PNM2 257 aa9.29□□□□□ -0.92
USP4-203ENST00000415188 A0A1W2PNN7 141 aa9.29□□□□□ -0.92
USP4-203ENST00000415188 F8WEM9 126 aa9.29□□□□□ -0.92
USP4-203ENST00000415188 BPY2O14599 106 aa9.29□□□□□ -0.92
USP4-203ENST00000415188 SCXQ7RTU7 201 aa9.28□□□□□ -0.92
USP4-203ENST00000415188 C9orf163Q8N9P6 203 aa9.28□□□□□ -0.92
USP4-203ENST00000415188 LINC00474Q9P2X8 69 aa9.28□□□□□ -0.92
USP4-203ENST00000415188 H0Y9J4 135 aa9.28□□□□□ -0.92
USP4-203ENST00000415188 Q8N1X5 172 aa9.28□□□□□ -0.92
USP4-203ENST00000415188 LRCOL1A6NCL2 159 aa9.27□□□□□ -0.93
USP4-203ENST00000415188 IGKV4-1P06312 121 aa9.27□□□□□ -0.93
USP4-203ENST00000415188 SMIM29Q86T20 159 aa9.27□□□□□ -0.93
USP4-203ENST00000415188 IGLV8-61A0A075B6I0 122 aa9.26□□□□□ -0.93
USP4-203ENST00000415188 FAT1Q14517 4588 aa9.26□□□□□ -0.93
USP4-203ENST00000415188 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.25□□□□□ -0.93
USP4-203ENST00000415188 A0A087WTM6 91 aa9.25□□□□□ -0.93
USP4-203ENST00000415188 RPS28P62857 69 aaKnown RBP9.23□□□□□ -0.93
USP4-203ENST00000415188 CYSTM1Q9H1C7 97 aa9.23□□□□□ -0.93
USP4-203ENST00000415188 J3KT08 172 aa9.22□□□□□ -0.93
USP4-203ENST00000415188 SPRR1BP22528 89 aa9.22□□□□□ -0.93
USP4-203ENST00000415188 KLKP1Q107X0 134 aa9.22□□□□□ -0.93
USP4-203ENST00000415188 C20orf197Q8N268 126 aa9.22□□□□□ -0.93
USP4-203ENST00000415188 KRTAP10-1P60331 282 aa9.21□□□□□ -0.93
USP4-203ENST00000415188 PRLHP81277 87 aa9.21□□□□□ -0.94
USP4-203ENST00000415188 PHF5AQ7RTV0 110 aaKnown RBP9.2□□□□□ -0.94
USP4-203ENST00000415188 CHTF8P0CG12 524 aa9.19□□□□□ -0.94
USP4-203ENST00000415188 HIGD2AQ9BW72 106 aa9.19□□□□□ -0.94
USP4-203ENST00000415188 NDUFC1O43677 76 aa9.18□□□□□ -0.94
USP4-203ENST00000415188 IGFL1Q6UW32 110 aa9.18□□□□□ -0.94
USP4-203ENST00000415188 DNAH8Q96JB1 4490 aa9.18□□□□□ -0.94
USP4-203ENST00000415188 EPM2AB3EWF7 344 aa9.17□□□□□ -0.94
USP4-203ENST00000415188 UBE2AP49459 152 aa9.17□□□□□ -0.94
USP4-203ENST00000415188 Q8N9L7 120 aa9.16□□□□□ -0.94
USP4-203ENST00000415188 DPH3Q96FX2 82 aa9.15□□□□□ -0.95
USP4-203ENST00000415188 OCR1Q9BZK8 76 aa9.15□□□□□ -0.95
USP4-203ENST00000415188 VPS13BQ7Z7G8 4022 aa9.14□□□□□ -0.95
USP4-203ENST00000415188 IGLV5-52A0A0A0MRZ9 124 aa9.13□□□□□ -0.95
USP4-203ENST00000415188 H7BZZ5 65 aa9.13□□□□□ -0.95
USP4-203ENST00000415188 KRTAP11-1Q8IUC1 163 aa9.13□□□□□ -0.95
USP4-203ENST00000415188 SPACA4Q8TDM5 124 aa9.13□□□□□ -0.95
USP4-203ENST00000415188 HERC1Q15751 4861 aa9.12□□□□□ -0.95
USP4-203ENST00000415188 FAM236DA0A1B0GTK5 79 aa9.12□□□□□ -0.95
USP4-203ENST00000415188 SMR3BP02814 79 aaPredicted RBP9.12□□□□□ -0.95
USP4-203ENST00000415188 FAM236CP0DP71 79 aa9.12□□□□□ -0.95
USP4-203ENST00000415188 DSCR10P59022 87 aa9.12□□□□□ -0.95
USP4-203ENST00000415188 Q5VSD8 79 aa9.12□□□□□ -0.95
USP4-203ENST00000415188 KRTAP13-1Q8IUC0 172 aa9.11□□□□□ -0.95
USP4-203ENST00000415188 ATP5EP56381 51 aaPredicted RBP9.1□□□□□ -0.95
USP4-203ENST00000415188 TMEM254Q8TBM7 123 aa9.09□□□□□ -0.95
USP4-203ENST00000415188 FAM30AQ9NZY2 134 aa9.08□□□□□ -0.96
USP4-203ENST00000415188 SNURFQ9Y675 71 aa9.08□□□□□ -0.96
USP4-203ENST00000415188 A0A087WSZ3 146 aa9.07□□□□□ -0.96
USP4-203ENST00000415188 MYCBP2O75592 4640 aa9.06□□□□□ -0.96
USP4-203ENST00000415188 A0A0U1RQV1 116 aa9.06□□□□□ -0.96
USP4-203ENST00000415188 PANO1I0J062 215 aa9.06□□□□□ -0.96
USP4-203ENST00000415188 HCG22E2RYF7 251 aa9.05□□□□□ -0.96
USP4-203ENST00000415188 K7EQZ3 153 aa9.05□□□□□ -0.96
USP4-203ENST00000415188 RPL37AP61513 92 aaKnown RBP9.04□□□□□ -0.96
USP4-203ENST00000415188 SERP1Q9Y6X1 66 aa9.04□□□□□ -0.96
USP4-203ENST00000415188 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.04□□□□□ -0.96
USP4-203ENST00000415188 ZNF706Q9Y5V0 76 aaPredicted RBP9.03□□□□□ -0.96
USP4-203ENST00000415188 FLG2Q5D862 2391 aaPredicted RBP9.03□□□□□ -0.96
USP4-203ENST00000415188 SRRM2Q9UQ35 2752 aaKnown RBP9.02□□□□□ -0.96
USP4-203ENST00000415188 A0A0G2JQZ4 141 aa9.02□□□□□ -0.97
USP4-203ENST00000415188 FAM229AH3BQW9 127 aa9.02□□□□□ -0.97
USP4-203ENST00000415188 LINC00483Q53H64 154 aa9.02□□□□□ -0.97
USP4-203ENST00000415188 PLAC8Q9NZF1 115 aa9.01□□□□□ -0.97
USP4-203ENST00000415188 DMBT1Q9UGM3 2413 aaPredicted RBP9□□□□□ -0.97
USP4-203ENST00000415188 Q6ZSA8 131 aa9□□□□□ -0.97
USP4-203ENST00000415188 C5orf47Q569G3 176 aa8.97□□□□□ -0.97
USP4-203ENST00000415188 LINC00472Q9H8W2 130 aa8.97□□□□□ -0.97
USP4-203ENST00000415188 OXTP01178 125 aa8.96□□□□□ -0.97
USP4-203ENST00000415188 A8MWP4 228 aa8.96□□□□□ -0.98
USP4-203ENST00000415188 PRR15Q8IV56 129 aa8.96□□□□□ -0.98
USP4-203ENST00000415188 KRTAP29-1A8MX34 341 aaPredicted RBP8.93□□□□□ -0.98
USP4-203ENST00000415188 SVIPQ8NHG7 77 aa8.93□□□□□ -0.98
USP4-203ENST00000415188 PSORS1C2Q9UIG4 136 aa8.93□□□□□ -0.98
USP4-203ENST00000415188 ZNF861PO60384 105 aa8.92□□□□□ -0.98
USP4-203ENST00000415188 DEFB116Q30KQ4 102 aa8.92□□□□□ -0.98
USP4-203ENST00000415188 ZCCHC13Q8WW36 166 aaKnown RBP8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 122.3 ms