RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 UBE2V1Q13404 147 aa12.18□□□□□ -0.46
VSX1-203ENST00000409285 C9JAW5 83 aa12.17□□□□□ -0.46
VSX1-203ENST00000409285 Q8N377 158 aa12.17□□□□□ -0.46
VSX1-203ENST00000409285 LINC01600Q96MT4 127 aa12.17□□□□□ -0.46
VSX1-203ENST00000409285 MTURNQ8N3F0 131 aa12.16□□□□□ -0.46
VSX1-203ENST00000409285 H3BQ85 93 aa12.15□□□□□ -0.46
VSX1-203ENST00000409285 DEFB105AQ8NG35 78 aa12.15□□□□□ -0.46
VSX1-203ENST00000409285 A0A087X002 238 aa12.14□□□□□ -0.47
VSX1-203ENST00000409285 ANAPC11Q9NYG5 84 aa12.14□□□□□ -0.47
VSX1-203ENST00000409285 ORMDL1Q9P0S3 153 aa12.14□□□□□ -0.47
VSX1-203ENST00000409285 OXTP01178 125 aa12.14□□□□□ -0.47
VSX1-203ENST00000409285 CRYGAP11844 174 aa12.14□□□□□ -0.47
VSX1-203ENST00000409285 DMBT1Q9UGM3 2413 aaPredicted RBP12.13□□□□□ -0.47
VSX1-203ENST00000409285 SMIM29Q86T20 159 aa12.12□□□□□ -0.47
VSX1-203ENST00000409285 TNXBP22105 4242 aa12.11□□□□□ -0.47
VSX1-203ENST00000409285 LAMTOR3Q9UHA4 124 aa12.1□□□□□ -0.47
VSX1-203ENST00000409285 KRTAP29-1A8MX34 341 aaPredicted RBP12.09□□□□□ -0.47
VSX1-203ENST00000409285 TMEM256-PLSCR3K7ERE1 68 aa12.09□□□□□ -0.47
VSX1-203ENST00000409285 KRTAP13-2Q52LG2 175 aa12.09□□□□□ -0.47
VSX1-203ENST00000409285 PRO0461Q9UI25 63 aa12.09□□□□□ -0.47
VSX1-203ENST00000409285 BAALC-AS2P0C853 105 aa12.08□□□□□ -0.47
VSX1-203ENST00000409285 PRR26Q8N8Z3 221 aa12.08□□□□□ -0.47
VSX1-203ENST00000409285 F8W1H4 67 aa12.07□□□□□ -0.48
VSX1-203ENST00000409285 H3BT86 120 aa12.07□□□□□ -0.48
VSX1-203ENST00000409285 C3orf22Q8N5N4 141 aa12.07□□□□□ -0.48
VSX1-203ENST00000409285 ANKRD29Q8N6D5 301 aa12.06□□□□□ -0.48
VSX1-203ENST00000409285 SMCPP49901 116 aaPredicted RBP12.05□□□□□ -0.48
VSX1-203ENST00000409285 KRTAP10-8P60410 259 aa12.05□□□□□ -0.48
VSX1-203ENST00000409285 J3QL48 77 aa12.04□□□□□ -0.48
VSX1-203ENST00000409285 IGLV9-49A0A0B4J1Y8 123 aa12.03□□□□□ -0.48
VSX1-203ENST00000409285 Q8NBF4 154 aa12.03□□□□□ -0.48
VSX1-203ENST00000409285 IGLV8-61A0A075B6I0 122 aa12.02□□□□□ -0.48
VSX1-203ENST00000409285 MT1HL1P0DM35 61 aa12.02□□□□□ -0.48
VSX1-203ENST00000409285 NDUFV3P56181 108 aaKnown RBP12.02□□□□□ -0.48
VSX1-203ENST00000409285 TYMSOSQ8TAI1 123 aa12.02□□□□□ -0.48
VSX1-203ENST00000409285 F8WEM9 126 aa12.02□□□□□ -0.49
VSX1-203ENST00000409285 MOBPQ13875 183 aa12.02□□□□□ -0.49
VSX1-203ENST00000409285 SSBP3-AS1Q7Z2R9 100 aa12.02□□□□□ -0.49
VSX1-203ENST00000409285 C9orf153Q5TBE3 101 aa12□□□□□ -0.49
VSX1-203ENST00000409285 HERC1Q15751 4861 aa11.97□□□□□ -0.49
VSX1-203ENST00000409285 Q6JHZ5 121 aa11.95□□□□□ -0.5
VSX1-203ENST00000409285 A0A1B0GV72 72 aa11.95□□□□□ -0.5
VSX1-203ENST00000409285 ETDBQ3ZM63 59 aa11.94□□□□□ -0.5
VSX1-203ENST00000409285 TEN1Q86WV5 123 aa11.93□□□□□ -0.5
VSX1-203ENST00000409285 JMJD7-PLA2G4BH0Y9G9 81 aa11.9□□□□□ -0.5
VSX1-203ENST00000409285 LINC00304Q8N9R0 145 aa11.9□□□□□ -0.5
VSX1-203ENST00000409285 IGFL1Q6UW32 110 aa11.89□□□□□ -0.51
VSX1-203ENST00000409285 SPAG11AQ6PDA7 123 aa11.89□□□□□ -0.51
VSX1-203ENST00000409285 OBSCN-AS1Q96MR7 158 aa11.89□□□□□ -0.51
VSX1-203ENST00000409285 RBM3P98179 157 aaKnown RBP11.88□□□□□ -0.51
VSX1-203ENST00000409285 CD164Q04900 197 aa11.88□□□□□ -0.51
VSX1-203ENST00000409285 TRBV7-4A0A0J9YYF1 115 aa11.86□□□□□ -0.51
VSX1-203ENST00000409285 SPINK1P00995 79 aa11.84□□□□□ -0.51
VSX1-203ENST00000409285 RPS29P62273 56 aaKnown RBP11.84□□□□□ -0.51
VSX1-203ENST00000409285 C4orf48Q5BLP8 95 aa11.83□□□□□ -0.52
VSX1-203ENST00000409285 C14orf132Q9NPU4 83 aa11.83□□□□□ -0.52
VSX1-203ENST00000409285 Q6Q795 121 aa11.83□□□□□ -0.52
VSX1-203ENST00000409285 DSCR8Q96T75 97 aa11.83□□□□□ -0.52
VSX1-203ENST00000409285 A0A0G2JQZ4 141 aa11.82□□□□□ -0.52
VSX1-203ENST00000409285 LOC110117498A0A087WWA1 95 aa11.8□□□□□ -0.52
VSX1-203ENST00000409285 PDE6GP18545 87 aa11.79□□□□□ -0.52
VSX1-203ENST00000409285 C21orf62-AS1Q17RA5 79 aa11.78□□□□□ -0.52
VSX1-203ENST00000409285 TRBV7-7A0A0K0K1E9 115 aa11.76□□□□□ -0.53
VSX1-203ENST00000409285 A0A1W2PNM2 257 aa11.76□□□□□ -0.53
VSX1-203ENST00000409285 Q5XG85 94 aa11.76□□□□□ -0.53
VSX1-203ENST00000409285 Q6ZQT0 140 aa11.76□□□□□ -0.53
VSX1-203ENST00000409285 CCKP06307 115 aa11.75□□□□□ -0.53
VSX1-203ENST00000409285 HRCT1Q6UXD1 115 aa11.74□□□□□ -0.53
VSX1-203ENST00000409285 LIMD2Q9BT23 127 aa11.74□□□□□ -0.53
VSX1-203ENST00000409285 A0A1B0GW54 56 aa11.7□□□□□ -0.54
VSX1-203ENST00000409285 VPS25Q9BRG1 176 aa11.7□□□□□ -0.54
VSX1-203ENST00000409285 J3QR89 54 aa11.67□□□□□ -0.54
VSX1-203ENST00000409285 ASB16-AS1Q495Z4 193 aa11.67□□□□□ -0.54
VSX1-203ENST00000409285 SS18L2Q9UHA2 77 aa11.67□□□□□ -0.54
VSX1-203ENST00000409285 A0A087WSZ3 146 aa11.65□□□□□ -0.54
VSX1-203ENST00000409285 K7ERU9 68 aa11.63□□□□□ -0.55
VSX1-203ENST00000409285 HMCN2Q8NDA2 5059 aa11.62□□□□□ -0.55
VSX1-203ENST00000409285 FAM240AA0A1B0GVK7 77 aa11.57□□□□□ -0.56
VSX1-203ENST00000409285 ACYP1P07311 99 aa11.56□□□□□ -0.56
VSX1-203ENST00000409285 C1orf195Q5TG92 126 aa11.56□□□□□ -0.56
VSX1-203ENST00000409285 FP248Q71RG6 208 aaPredicted RBP11.56□□□□□ -0.56
VSX1-203ENST00000409285 RETNLBQ9BQ08 111 aa11.54□□□□□ -0.56
VSX1-203ENST00000409285 Q96NJ1 140 aa11.52□□□□□ -0.56
VSX1-203ENST00000409285 LINC00846Q9NV44 126 aa11.52□□□□□ -0.56
VSX1-203ENST00000409285 LINC00472Q9H8W2 130 aa11.51□□□□□ -0.57
VSX1-203ENST00000409285 UBL5Q9BZL1 73 aa11.47□□□□□ -0.57
VSX1-203ENST00000409285 PRR4Q16378 134 aa11.45□□□□□ -0.58
VSX1-203ENST00000409285 NREPQ16612 68 aa11.44□□□□□ -0.58
VSX1-203ENST00000409285 Q6ZVQ6 151 aa11.44□□□□□ -0.58
VSX1-203ENST00000409285 IGLV7-46A0A075B6I9 117 aa11.43□□□□□ -0.58
VSX1-203ENST00000409285 CDIP1Q9H305 208 aa11.42□□□□□ -0.58
VSX1-203ENST00000409285 J3KT08 172 aa11.41□□□□□ -0.58
VSX1-203ENST00000409285 IGKV4-1P06312 121 aa11.38□□□□□ -0.59
VSX1-203ENST00000409285 TPRXLQ17RH7 258 aa11.38□□□□□ -0.59
VSX1-203ENST00000409285 DEFB116Q30KQ4 102 aa11.36□□□□□ -0.59
VSX1-203ENST00000409285 SIGMAR1Q99720 223 aa11.36□□□□□ -0.59
VSX1-203ENST00000409285 LINC00643Q86TS7 51 aa11.35□□□□□ -0.59
VSX1-203ENST00000409285 LRP2P98164 4655 aa11.34□□□□□ -0.59
VSX1-203ENST00000409285 KRTAP13-3Q3SY46 172 aa11.34□□□□□ -0.59
VSX1-203ENST00000409285 LPAP08519 4548 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms