RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 H3BQ85 93 aa8.73□□□□□ -1.01
SKA1-202ENST00000398452 PCP4P48539 62 aa8.73□□□□□ -1.01
SKA1-202ENST00000398452 SMCR5Q8TEV8 140 aa8.73□□□□□ -1.01
SKA1-202ENST00000398452 H3BMG7 143 aa8.72□□□□□ -1.01
SKA1-202ENST00000398452 Q9BRP9 147 aa8.72□□□□□ -1.01
SKA1-202ENST00000398452 ORMDL1Q9P0S3 153 aa8.72□□□□□ -1.01
SKA1-202ENST00000398452 ZNF706Q9Y5V0 76 aaPredicted RBP8.72□□□□□ -1.01
SKA1-202ENST00000398452 Q6ZQY7 126 aa8.71□□□□□ -1.02
SKA1-202ENST00000398452 C9JAW5 83 aa8.7□□□□□ -1.02
SKA1-202ENST00000398452 KRTAP4-2Q9BYR5 136 aa8.7□□□□□ -1.02
SKA1-202ENST00000398452 KRTAP13-1Q8IUC0 172 aa8.69□□□□□ -1.02
SKA1-202ENST00000398452 DEFB105AQ8NG35 78 aa8.69□□□□□ -1.02
SKA1-202ENST00000398452 TMEM256-PLSCR3K7ERE1 68 aa8.68□□□□□ -1.02
SKA1-202ENST00000398452 Q5VSD8 79 aa8.68□□□□□ -1.02
SKA1-202ENST00000398452 FLG2Q5D862 2391 aaPredicted RBP8.68□□□□□ -1.02
SKA1-202ENST00000398452 BAALC-AS2P0C853 105 aa8.67□□□□□ -1.02
SKA1-202ENST00000398452 UBE2V1Q13404 147 aa8.67□□□□□ -1.02
SKA1-202ENST00000398452 ERC2-IT1O76042 136 aa8.66□□□□□ -1.02
SKA1-202ENST00000398452 PPDPFLQ8WWR9 84 aa8.66□□□□□ -1.02
SKA1-202ENST00000398452 TEX49A0A1B0GTD5 131 aa8.65□□□□□ -1.02
SKA1-202ENST00000398452 H3BT86 120 aa8.65□□□□□ -1.02
SKA1-202ENST00000398452 GAGE2AQ6NT46 116 aa8.65□□□□□ -1.02
SKA1-202ENST00000398452 SPINK6Q6UWN8 80 aa8.65□□□□□ -1.02
SKA1-202ENST00000398452 F8W1H4 67 aa8.64□□□□□ -1.03
SKA1-202ENST00000398452 ST20-AS1Q8NBB2 130 aa8.64□□□□□ -1.03
SKA1-202ENST00000398452 LAMTOR3Q9UHA4 124 aa8.64□□□□□ -1.03
SKA1-202ENST00000398452 KRTAP9-7A8MTY7 169 aa8.63□□□□□ -1.03
SKA1-202ENST00000398452 F8WEM9 126 aa8.63□□□□□ -1.03
SKA1-202ENST00000398452 H3BS24 57 aa8.63□□□□□ -1.03
SKA1-202ENST00000398452 MTURNQ8N3F0 131 aa8.63□□□□□ -1.03
SKA1-202ENST00000398452 ANKRD29Q8N6D5 301 aa8.63□□□□□ -1.03
SKA1-202ENST00000398452 DMBT1Q9UGM3 2413 aaPredicted RBP8.63□□□□□ -1.03
SKA1-202ENST00000398452 SPRR4Q96PI1 79 aa8.62□□□□□ -1.03
SKA1-202ENST00000398452 IGLV5-48A0A075B6I7 105 aa8.61□□□□□ -1.03
SKA1-202ENST00000398452 Q8N377 158 aa8.59□□□□□ -1.03
SKA1-202ENST00000398452 NDUFV3P56181 108 aaKnown RBP8.58□□□□□ -1.04
SKA1-202ENST00000398452 KRTAP4-11Q9BYQ6 195 aa8.58□□□□□ -1.04
SKA1-202ENST00000398452 FAT1Q14517 4588 aa8.58□□□□□ -1.04
SKA1-202ENST00000398452 JMJD7-PLA2G4BH0Y9G9 81 aa8.57□□□□□ -1.04
SKA1-202ENST00000398452 SPRR1BP22528 89 aa8.57□□□□□ -1.04
SKA1-202ENST00000398452 LINC01547P58512 204 aaPredicted RBP8.56□□□□□ -1.04
SKA1-202ENST00000398452 SRRM2Q9UQ35 2752 aaKnown RBP8.55□□□□□ -1.04
SKA1-202ENST00000398452 PRO0461Q9UI25 63 aa8.55□□□□□ -1.04
SKA1-202ENST00000398452 LINC00483Q53H64 154 aa8.54□□□□□ -1.04
SKA1-202ENST00000398452 C9orf153Q5TBE3 101 aa8.54□□□□□ -1.04
SKA1-202ENST00000398452 A0A1B0GV72 72 aa8.53□□□□□ -1.04
SKA1-202ENST00000398452 RBM3P98179 157 aaKnown RBP8.53□□□□□ -1.04
SKA1-202ENST00000398452 FAM229BQ4G0N7 80 aa8.53□□□□□ -1.04
SKA1-202ENST00000398452 C3orf22Q8N5N4 141 aa8.53□□□□□ -1.04
SKA1-202ENST00000398452 DSCR8Q96T75 97 aa8.53□□□□□ -1.04
SKA1-202ENST00000398452 IGLV9-49A0A0B4J1Y8 123 aa8.52□□□□□ -1.05
SKA1-202ENST00000398452 CRYGAP11844 174 aa8.52□□□□□ -1.05
SKA1-202ENST00000398452 KRTAP10-4P60372 401 aaPredicted RBP8.52□□□□□ -1.05
SKA1-202ENST00000398452 TEN1Q86WV5 123 aa8.52□□□□□ -1.05
SKA1-202ENST00000398452 HERC1Q15751 4861 aa8.51□□□□□ -1.05
SKA1-202ENST00000398452 VPS13BQ7Z7G8 4022 aa8.51□□□□□ -1.05
SKA1-202ENST00000398452 LINC01600Q96MT4 127 aa8.51□□□□□ -1.05
SKA1-202ENST00000398452 ETDBQ3ZM63 59 aa8.5□□□□□ -1.05
SKA1-202ENST00000398452 ANAPC11Q9NYG5 84 aa8.5□□□□□ -1.05
SKA1-202ENST00000398452 Q6JHZ5 121 aa8.49□□□□□ -1.05
SKA1-202ENST00000398452 SMIM29Q86T20 159 aa8.49□□□□□ -1.05
SKA1-202ENST00000398452 Q8NBF4 154 aa8.49□□□□□ -1.05
SKA1-202ENST00000398452 PDE6GP18545 87 aa8.48□□□□□ -1.05
SKA1-202ENST00000398452 MOBPQ13875 183 aa8.47□□□□□ -1.05
SKA1-202ENST00000398452 LCE5AQ5TCM9 118 aa8.47□□□□□ -1.05
SKA1-202ENST00000398452 MYCBP2O75592 4640 aa8.46□□□□□ -1.05
SKA1-202ENST00000398452 C14orf132Q9NPU4 83 aa8.46□□□□□ -1.06
SKA1-202ENST00000398452 KRTAP1-4P0C5Y4 121 aa8.45□□□□□ -1.06
SKA1-202ENST00000398452 SSBP3-AS1Q7Z2R9 100 aa8.45□□□□□ -1.06
SKA1-202ENST00000398452 TYMSOSQ8TAI1 123 aa8.45□□□□□ -1.06
SKA1-202ENST00000398452 VPS25Q9BRG1 176 aa8.44□□□□□ -1.06
SKA1-202ENST00000398452 IGLV8-61A0A075B6I0 122 aa8.43□□□□□ -1.06
SKA1-202ENST00000398452 J3QR89 54 aa8.43□□□□□ -1.06
SKA1-202ENST00000398452 OBSCN-AS1Q96MR7 158 aa8.43□□□□□ -1.06
SKA1-202ENST00000398452 LOC110117498A0A087WWA1 95 aa8.41□□□□□ -1.06
SKA1-202ENST00000398452 A0A087X002 238 aa8.41□□□□□ -1.06
SKA1-202ENST00000398452 TRBV7-4A0A0J9YYF1 115 aa8.41□□□□□ -1.06
SKA1-202ENST00000398452 PRR26Q8N8Z3 221 aa8.41□□□□□ -1.06
SKA1-202ENST00000398452 CCKP06307 115 aa8.4□□□□□ -1.06
SKA1-202ENST00000398452 IGFL1Q6UW32 110 aa8.4□□□□□ -1.06
SKA1-202ENST00000398452 Q6ZQT0 140 aa8.38□□□□□ -1.07
SKA1-202ENST00000398452 KRTAP13-2Q52LG2 175 aa8.37□□□□□ -1.07
SKA1-202ENST00000398452 KRTAP29-1A8MX34 341 aaPredicted RBP8.36□□□□□ -1.07
SKA1-202ENST00000398452 KRTAP9-3Q9BYQ3 159 aa8.36□□□□□ -1.07
SKA1-202ENST00000398452 HRCT1Q6UXD1 115 aa8.35□□□□□ -1.07
SKA1-202ENST00000398452 A0A1B0GW54 56 aa8.34□□□□□ -1.07
SKA1-202ENST00000398452 CD164Q04900 197 aa8.34□□□□□ -1.07
SKA1-202ENST00000398452 SPAG11AQ6PDA7 123 aa8.34□□□□□ -1.07
SKA1-202ENST00000398452 LINC00304Q8N9R0 145 aa8.34□□□□□ -1.07
SKA1-202ENST00000398452 A0A0G2JQZ4 141 aa8.33□□□□□ -1.08
SKA1-202ENST00000398452 K7ERU9 68 aa8.33□□□□□ -1.08
SKA1-202ENST00000398452 OXTP01178 125 aa8.33□□□□□ -1.08
SKA1-202ENST00000398452 Q6Q795 121 aa8.33□□□□□ -1.08
SKA1-202ENST00000398452 ACYP1P07311 99 aa8.32□□□□□ -1.08
SKA1-202ENST00000398452 SS18L2Q9UHA2 77 aa8.32□□□□□ -1.08
SKA1-202ENST00000398452 A0A1W2PNM2 257 aa8.31□□□□□ -1.08
SKA1-202ENST00000398452 TRBV7-7A0A0K0K1E9 115 aa8.3□□□□□ -1.08
SKA1-202ENST00000398452 SPINK1P00995 79 aa8.3□□□□□ -1.08
SKA1-202ENST00000398452 LIMD2Q9BT23 127 aa8.3□□□□□ -1.08
SKA1-202ENST00000398452 A0A087WSZ3 146 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms