RNA–Protein interactions for RNA: ENST00000397404.5

TSPAN4-204, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TSPAN4, Length 1,462 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-204ENST00000397404 LOC110117498A0A087WWA1 95 aa11.53□□□□□ -0.56
TSPAN4-204ENST00000397404 GAGE2AQ6NT46 116 aa11.53□□□□□ -0.56
TSPAN4-204ENST00000397404 SPINK6Q6UWN8 80 aa11.53□□□□□ -0.56
TSPAN4-204ENST00000397404 FAM229AH3BQW9 127 aa11.51□□□□□ -0.57
TSPAN4-204ENST00000397404 PLA2G1BP04054 148 aaKnown RBP11.51□□□□□ -0.57
TSPAN4-204ENST00000397404 IGLV8-61A0A075B6I0 122 aa11.51□□□□□ -0.57
TSPAN4-204ENST00000397404 SMIM29Q86T20 159 aa11.51□□□□□ -0.57
TSPAN4-204ENST00000397404 TRBV7-4A0A0J9YYF1 115 aa11.5□□□□□ -0.57
TSPAN4-204ENST00000397404 A0A1B0GW54 56 aa11.5□□□□□ -0.57
TSPAN4-204ENST00000397404 Q6JHZ5 121 aa11.5□□□□□ -0.57
TSPAN4-204ENST00000397404 FAM240AA0A1B0GVK7 77 aa11.49□□□□□ -0.57
TSPAN4-204ENST00000397404 ACYP1P07311 99 aa11.49□□□□□ -0.57
TSPAN4-204ENST00000397404 FAM229BQ4G0N7 80 aa11.48□□□□□ -0.57
TSPAN4-204ENST00000397404 C14orf132Q9NPU4 83 aa11.47□□□□□ -0.57
TSPAN4-204ENST00000397404 SMR3BP02814 79 aaPredicted RBP11.45□□□□□ -0.58
TSPAN4-204ENST00000397404 CCKP06307 115 aa11.44□□□□□ -0.58
TSPAN4-204ENST00000397404 SRRM2Q9UQ35 2752 aaKnown RBP11.44□□□□□ -0.58
TSPAN4-204ENST00000397404 Q6ZQT0 140 aa11.44□□□□□ -0.58
TSPAN4-204ENST00000397404 C3orf22Q8N5N4 141 aa11.43□□□□□ -0.58
TSPAN4-204ENST00000397404 KRTAP10-4P60372 401 aaPredicted RBP11.4□□□□□ -0.58
TSPAN4-204ENST00000397404 Q8NBF4 154 aa11.4□□□□□ -0.58
TSPAN4-204ENST00000397404 SSBP3-AS1Q7Z2R9 100 aa11.38□□□□□ -0.59
TSPAN4-204ENST00000397404 A0A1B0GV72 72 aa11.37□□□□□ -0.59
TSPAN4-204ENST00000397404 Q6Q795 121 aa11.37□□□□□ -0.59
TSPAN4-204ENST00000397404 CRYGAP11844 174 aa11.36□□□□□ -0.59
TSPAN4-204ENST00000397404 C9orf153Q5TBE3 101 aa11.35□□□□□ -0.59
TSPAN4-204ENST00000397404 FAT1Q14517 4588 aa11.34□□□□□ -0.59
TSPAN4-204ENST00000397404 Q5VSD8 79 aa11.34□□□□□ -0.59
TSPAN4-204ENST00000397404 IGFL1Q6UW32 110 aa11.34□□□□□ -0.59
TSPAN4-204ENST00000397404 HSPG2P98160 4391 aa11.34□□□□□ -0.59
TSPAN4-204ENST00000397404 IGLV9-49A0A0B4J1Y8 123 aa11.33□□□□□ -0.6
TSPAN4-204ENST00000397404 KRTAP1-4P0C5Y4 121 aa11.33□□□□□ -0.6
TSPAN4-204ENST00000397404 Q8N1X5 172 aa11.32□□□□□ -0.6
TSPAN4-204ENST00000397404 RYR1P21817 5038 aa11.32□□□□□ -0.6
TSPAN4-204ENST00000397404 CD164Q04900 197 aa11.3□□□□□ -0.6
TSPAN4-204ENST00000397404 MOBPQ13875 183 aa11.29□□□□□ -0.6
TSPAN4-204ENST00000397404 VPS25Q9BRG1 176 aa11.29□□□□□ -0.6
TSPAN4-204ENST00000397404 EPPK1P58107 5090 aaKnown RBP11.29□□□□□ -0.6
TSPAN4-204ENST00000397404 UBL5Q9BZL1 73 aa11.28□□□□□ -0.6
TSPAN4-204ENST00000397404 A0A1W2PNM2 257 aa11.27□□□□□ -0.6
TSPAN4-204ENST00000397404 ANAPC11Q9NYG5 84 aa11.26□□□□□ -0.61
TSPAN4-204ENST00000397404 TRBV7-7A0A0K0K1E9 115 aa11.24□□□□□ -0.61
TSPAN4-204ENST00000397404 A0A087X002 238 aa11.23□□□□□ -0.61
TSPAN4-204ENST00000397404 SS18L2Q9UHA2 77 aa11.23□□□□□ -0.61
TSPAN4-204ENST00000397404 LINC00846Q9NV44 126 aa11.22□□□□□ -0.61
TSPAN4-204ENST00000397404 PKHD1L1Q86WI1 4243 aa11.21□□□□□ -0.61
TSPAN4-204ENST00000397404 TYMSOSQ8TAI1 123 aa11.21□□□□□ -0.61
TSPAN4-204ENST00000397404 KRTAP13-2Q52LG2 175 aa11.2□□□□□ -0.62
TSPAN4-204ENST00000397404 LINC00643Q86TS7 51 aa11.2□□□□□ -0.62
TSPAN4-204ENST00000397404 ATP5EP2Q5VTU8 51 aa11.19□□□□□ -0.62
TSPAN4-204ENST00000397404 NREPQ16612 68 aa11.19□□□□□ -0.62
TSPAN4-204ENST00000397404 SPAG11AQ6PDA7 123 aa11.19□□□□□ -0.62
TSPAN4-204ENST00000397404 CDIP1Q9H305 208 aa11.18□□□□□ -0.62
TSPAN4-204ENST00000397404 KIAA1109Q2LD37 5005 aa11.17□□□□□ -0.62
TSPAN4-204ENST00000397404 C4orf48Q5BLP8 95 aa11.16□□□□□ -0.62
TSPAN4-204ENST00000397404 A0A087WSZ3 146 aa11.15□□□□□ -0.62
TSPAN4-204ENST00000397404 RPS29P62273 56 aaKnown RBP11.15□□□□□ -0.62
TSPAN4-204ENST00000397404 Q5XG85 94 aa11.15□□□□□ -0.62
TSPAN4-204ENST00000397404 Q6ZVQ6 151 aa11.14□□□□□ -0.63
TSPAN4-204ENST00000397404 SPINK1P00995 79 aa11.13□□□□□ -0.63
TSPAN4-204ENST00000397404 LIMD2Q9BT23 127 aa11.12□□□□□ -0.63
TSPAN4-204ENST00000397404 CXCL6P80162 114 aa11.12□□□□□ -0.63
TSPAN4-204ENST00000397404 PRR26Q8N8Z3 221 aa11.12□□□□□ -0.63
TSPAN4-204ENST00000397404 ASB16-AS1Q495Z4 193 aa11.11□□□□□ -0.63
TSPAN4-204ENST00000397404 A0A0G2JQZ4 141 aa11.1□□□□□ -0.63
TSPAN4-204ENST00000397404 LINC00304Q8N9R0 145 aa11.09□□□□□ -0.63
TSPAN4-204ENST00000397404 J3KT08 172 aa11.08□□□□□ -0.64
TSPAN4-204ENST00000397404 IMUPQ9GZP8 106 aa11.07□□□□□ -0.64
TSPAN4-204ENST00000397404 SIGMAR1Q99720 223 aa11.06□□□□□ -0.64
TSPAN4-204ENST00000397404 BIRC6Q9NR09 4857 aa11.05□□□□□ -0.64
TSPAN4-204ENST00000397404 BPY2O14599 106 aa11.05□□□□□ -0.64
TSPAN4-204ENST00000397404 OXTP01178 125 aa11.05□□□□□ -0.64
TSPAN4-204ENST00000397404 HRCT1Q6UXD1 115 aa11.05□□□□□ -0.64
TSPAN4-204ENST00000397404 LINC00472Q9H8W2 130 aa11.02□□□□□ -0.65
TSPAN4-204ENST00000397404 KRTAP10-8P60410 259 aa11.01□□□□□ -0.65
TSPAN4-204ENST00000397404 KRTAP17-1Q9BYP8 105 aa10.99□□□□□ -0.65
TSPAN4-204ENST00000397404 MT-ATP8P03928 68 aa10.96□□□□□ -0.65
TSPAN4-204ENST00000397404 NDUFB1O75438 58 aa10.94□□□□□ -0.66
TSPAN4-204ENST00000397404 IGKV3D-7A0A0C4DH55 119 aa10.93□□□□□ -0.66
TSPAN4-204ENST00000397404 Q96NJ1 140 aa10.93□□□□□ -0.66
TSPAN4-204ENST00000397404 FAT3Q8TDW7 4589 aa10.93□□□□□ -0.66
TSPAN4-204ENST00000397404 A8MWP4 228 aa10.92□□□□□ -0.66
TSPAN4-204ENST00000397404 TNXBP22105 4242 aa10.9□□□□□ -0.66
TSPAN4-204ENST00000397404 KRTAP29-1A8MX34 341 aaPredicted RBP10.9□□□□□ -0.66
TSPAN4-204ENST00000397404 IGKV4-1P06312 121 aa10.9□□□□□ -0.66
TSPAN4-204ENST00000397404 DSCR10P59022 87 aa10.89□□□□□ -0.67
TSPAN4-204ENST00000397404 HERC2O95714 4834 aa10.89□□□□□ -0.67
TSPAN4-204ENST00000397404 LRP1Q07954 4544 aaKnown RBP10.88□□□□□ -0.67
TSPAN4-204ENST00000397404 HIST1H4AP62805 103 aaKnown RBP10.87□□□□□ -0.67
TSPAN4-204ENST00000397404 C1orf195Q5TG92 126 aa10.87□□□□□ -0.67
TSPAN4-204ENST00000397404 FLG2Q5D862 2391 aaPredicted RBP10.87□□□□□ -0.67
TSPAN4-204ENST00000397404 PRR15Q8IV56 129 aa10.86□□□□□ -0.67
TSPAN4-204ENST00000397404 SCGB1A1P11684 91 aa10.85□□□□□ -0.67
TSPAN4-204ENST00000397404 MT1HL1P0DM35 61 aa10.83□□□□□ -0.68
TSPAN4-204ENST00000397404 DEFB116Q30KQ4 102 aa10.83□□□□□ -0.68
TSPAN4-204ENST00000397404 KRTAP4-5Q9BYR2 181 aa10.82□□□□□ -0.68
TSPAN4-204ENST00000397404 MYCBP2O75592 4640 aa10.82□□□□□ -0.68
TSPAN4-204ENST00000397404 K7EQZ3 153 aa10.81□□□□□ -0.68
TSPAN4-204ENST00000397404 A0A1B0GVX0 72 aa10.81□□□□□ -0.68
TSPAN4-204ENST00000397404 C8orf87E5RJ46 101 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms