RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 SMIM29Q86T20 159 aa16.23■□□□□ 0.19
MSX1-201ENST00000382723 SPRR4Q96PI1 79 aa16.23■□□□□ 0.19
MSX1-201ENST00000382723 SIGMAR1Q99720 223 aa16.23■□□□□ 0.19
MSX1-201ENST00000382723 ZNF706Q9Y5V0 76 aaPredicted RBP16.21■□□□□ 0.19
MSX1-201ENST00000382723 SPRR1BP22528 89 aa16.2■□□□□ 0.18
MSX1-201ENST00000382723 VPS13BQ7Z7G8 4022 aa16.2■□□□□ 0.18
MSX1-201ENST00000382723 DSCR8Q96T75 97 aa16.18■□□□□ 0.18
MSX1-201ENST00000382723 F8WEM9 126 aa16.16■□□□□ 0.18
MSX1-201ENST00000382723 ANAPC11Q9NYG5 84 aa16.15■□□□□ 0.18
MSX1-201ENST00000382723 LINC00483Q53H64 154 aa16.13■□□□□ 0.17
MSX1-201ENST00000382723 SCGB1A1P11684 91 aa16.13■□□□□ 0.17
MSX1-201ENST00000382723 CDK2AP2O75956 126 aa16.11■□□□□ 0.17
MSX1-201ENST00000382723 LOC110117498A0A087WWA1 95 aa16.11■□□□□ 0.17
MSX1-201ENST00000382723 TRBV7-4A0A0J9YYF1 115 aa16.11■□□□□ 0.17
MSX1-201ENST00000382723 MT-ATP8P03928 68 aa16.1■□□□□ 0.17
MSX1-201ENST00000382723 Q6ZQT0 140 aa16.1■□□□□ 0.17
MSX1-201ENST00000382723 CCKP06307 115 aa16.08■□□□□ 0.16
MSX1-201ENST00000382723 IGLV9-49A0A0B4J1Y8 123 aa16.07■□□□□ 0.16
MSX1-201ENST00000382723 EPPK1P58107 5090 aaKnown RBP16.07■□□□□ 0.16
MSX1-201ENST00000382723 FAM240AA0A1B0GVK7 77 aa16.06■□□□□ 0.16
MSX1-201ENST00000382723 PDE6GP18545 87 aa16.05■□□□□ 0.16
MSX1-201ENST00000382723 A0A0G2JQZ4 141 aa16.04■□□□□ 0.16
MSX1-201ENST00000382723 KRTAP10-4P60372 401 aaPredicted RBP16.04■□□□□ 0.16
MSX1-201ENST00000382723 FAT1Q14517 4588 aa16.02■□□□□ 0.16
MSX1-201ENST00000382723 IGLV8-61A0A075B6I0 122 aa16.02■□□□□ 0.16
MSX1-201ENST00000382723 C9orf153Q5TBE3 101 aa16.02■□□□□ 0.15
MSX1-201ENST00000382723 SPINK6Q6UWN8 80 aa16.02■□□□□ 0.15
MSX1-201ENST00000382723 FAM229AH3BQW9 127 aa16.01■□□□□ 0.15
MSX1-201ENST00000382723 IGFL1Q6UW32 110 aa16■□□□□ 0.15
MSX1-201ENST00000382723 PLA2G1BP04054 148 aaKnown RBP15.97■□□□□ 0.15
MSX1-201ENST00000382723 MOBPQ13875 183 aa15.96■□□□□ 0.15
MSX1-201ENST00000382723 HSPG2P98160 4391 aa15.96■□□□□ 0.15
MSX1-201ENST00000382723 ACYP1P07311 99 aa15.95■□□□□ 0.14
MSX1-201ENST00000382723 A0A1W2PNM2 257 aa15.94■□□□□ 0.14
MSX1-201ENST00000382723 KRTAP1-4P0C5Y4 121 aa15.94■□□□□ 0.14
MSX1-201ENST00000382723 Q6JHZ5 121 aa15.94■□□□□ 0.14
MSX1-201ENST00000382723 Q5VSD8 79 aa15.94■□□□□ 0.14
MSX1-201ENST00000382723 RYR1P21817 5038 aa15.93■□□□□ 0.14
MSX1-201ENST00000382723 A0A087X002 238 aa15.91■□□□□ 0.14
MSX1-201ENST00000382723 Q8NBF4 154 aa15.91■□□□□ 0.14
MSX1-201ENST00000382723 LINC00846Q9NV44 126 aa15.91■□□□□ 0.14
MSX1-201ENST00000382723 FAM229BQ4G0N7 80 aa15.88■□□□□ 0.13
MSX1-201ENST00000382723 KRTAP17-1Q9BYP8 105 aa15.86■□□□□ 0.13
MSX1-201ENST00000382723 KRTAP13-2Q52LG2 175 aa15.85■□□□□ 0.13
MSX1-201ENST00000382723 KIAA1109Q2LD37 5005 aa15.85■□□□□ 0.13
MSX1-201ENST00000382723 CRYGAP11844 174 aa15.84■□□□□ 0.13
MSX1-201ENST00000382723 HRCT1Q6UXD1 115 aa15.8■□□□□ 0.12
MSX1-201ENST00000382723 Q8N1X5 172 aa15.78■□□□□ 0.12
MSX1-201ENST00000382723 SSBP3-AS1Q7Z2R9 100 aa15.77■□□□□ 0.12
MSX1-201ENST00000382723 UBL5Q9BZL1 73 aa15.77■□□□□ 0.12
MSX1-201ENST00000382723 Q6Q795 121 aa15.76■□□□□ 0.11
MSX1-201ENST00000382723 A0A087WSZ3 146 aa15.75■□□□□ 0.11
MSX1-201ENST00000382723 A0A1B0GW54 56 aa15.74■□□□□ 0.11
MSX1-201ENST00000382723 PRR26Q8N8Z3 221 aa15.74■□□□□ 0.11
MSX1-201ENST00000382723 LINC00643Q86TS7 51 aa15.74■□□□□ 0.11
MSX1-201ENST00000382723 TRBV7-7A0A0K0K1E9 115 aa15.72■□□□□ 0.11
MSX1-201ENST00000382723 Q6ZVQ6 151 aa15.72■□□□□ 0.11
MSX1-201ENST00000382723 TYMSOSQ8TAI1 123 aa15.72■□□□□ 0.11
MSX1-201ENST00000382723 NREPQ16612 68 aa15.7■□□□□ 0.1
MSX1-201ENST00000382723 PKHD1L1Q86WI1 4243 aa15.68■□□□□ 0.1
MSX1-201ENST00000382723 IGKV3D-7A0A0C4DH55 119 aa15.62■□□□□ 0.09
MSX1-201ENST00000382723 IMUPQ9GZP8 106 aa15.61■□□□□ 0.09
MSX1-201ENST00000382723 CD164Q04900 197 aa15.6■□□□□ 0.09
MSX1-201ENST00000382723 ANAPC13Q9BS18 74 aa15.55■□□□□ 0.08
MSX1-201ENST00000382723 DEFB116Q30KQ4 102 aa15.55■□□□□ 0.08
MSX1-201ENST00000382723 C4orf48Q5BLP8 95 aa15.55■□□□□ 0.08
MSX1-201ENST00000382723 SS18L2Q9UHA2 77 aa15.53■□□□□ 0.08
MSX1-201ENST00000382723 BPY2O14599 106 aa15.52■□□□□ 0.07
MSX1-201ENST00000382723 ATP5EP2Q5VTU8 51 aa15.52■□□□□ 0.07
MSX1-201ENST00000382723 LINC00304Q8N9R0 145 aa15.52■□□□□ 0.07
MSX1-201ENST00000382723 BIRC6Q9NR09 4857 aa15.5■□□□□ 0.07
MSX1-201ENST00000382723 KRTAP4-5Q9BYR2 181 aa15.5■□□□□ 0.07
MSX1-201ENST00000382723 FAM236AA0A1B0GUQ0 79 aa15.48■□□□□ 0.07
MSX1-201ENST00000382723 FAM236BA0A1B0GV22 79 aa15.48■□□□□ 0.07
MSX1-201ENST00000382723 CXCL6P80162 114 aa15.48■□□□□ 0.07
MSX1-201ENST00000382723 LINC00472Q9H8W2 130 aa15.47■□□□□ 0.07
MSX1-201ENST00000382723 SPINK1P00995 79 aa15.45■□□□□ 0.06
MSX1-201ENST00000382723 Q96NJ1 140 aa15.43■□□□□ 0.06
MSX1-201ENST00000382723 LRP1Q07954 4544 aaKnown RBP15.43■□□□□ 0.06
MSX1-201ENST00000382723 HIST1H4AP62805 103 aaKnown RBP15.43■□□□□ 0.06
MSX1-201ENST00000382723 Q8N9L7 120 aa15.43■□□□□ 0.06
MSX1-201ENST00000382723 SPAG11AQ6PDA7 123 aa15.41■□□□□ 0.06
MSX1-201ENST00000382723 LIMD2Q9BT23 127 aa15.41■□□□□ 0.06
MSX1-201ENST00000382723 KRTAP10-8P60410 259 aa15.4■□□□□ 0.06
MSX1-201ENST00000382723 DSCR10P59022 87 aa15.39■□□□□ 0.05
MSX1-201ENST00000382723 FLG2Q5D862 2391 aaPredicted RBP15.38■□□□□ 0.05
MSX1-201ENST00000382723 IGKV4-1P06312 121 aa15.37■□□□□ 0.05
MSX1-201ENST00000382723 Q5XG85 94 aa15.37■□□□□ 0.05
MSX1-201ENST00000382723 A0A087WVE0 104 aa15.35■□□□□ 0.05
MSX1-201ENST00000382723 ASB16-AS1Q495Z4 193 aa15.35■□□□□ 0.05
MSX1-201ENST00000382723 FAT3Q8TDW7 4589 aa15.34■□□□□ 0.05
MSX1-201ENST00000382723 J3KT08 172 aa15.33■□□□□ 0.04
MSX1-201ENST00000382723 K7EQZ3 153 aa15.33■□□□□ 0.04
MSX1-201ENST00000382723 SVIPQ8NHG7 77 aa15.33■□□□□ 0.04
MSX1-201ENST00000382723 MYCBP2O75592 4640 aa15.31■□□□□ 0.04
MSX1-201ENST00000382723 RPS29P62273 56 aaKnown RBP15.31■□□□□ 0.04
MSX1-201ENST00000382723 TNXBP22105 4242 aa15.3■□□□□ 0.04
MSX1-201ENST00000382723 CCDC179H3BU77 68 aa15.3■□□□□ 0.04
MSX1-201ENST00000382723 C1orf195Q5TG92 126 aa15.3■□□□□ 0.04
MSX1-201ENST00000382723 HERC2O95714 4834 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms