RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 SPRR4Q96PI1 79 aa8.75□□□□□ -1.01
USP49-201ENST00000373006 LCE6AA0A183 80 aa8.75□□□□□ -1.01
USP49-201ENST00000373006 A6NED7 52 aa8.74□□□□□ -1.01
USP49-201ENST00000373006 SPRR1AP35321 89 aa8.74□□□□□ -1.01
USP49-201ENST00000373006 A0A1B0GW54 56 aa8.73□□□□□ -1.01
USP49-201ENST00000373006 ZCCHC13Q8WW36 166 aaKnown RBP8.73□□□□□ -1.01
USP49-201ENST00000373006 CSMD3Q7Z407 3707 aa8.73□□□□□ -1.01
USP49-201ENST00000373006 PSCAO43653 123 aa8.73□□□□□ -1.01
USP49-201ENST00000373006 LINC00476Q8WZB0 136 aa8.73□□□□□ -1.01
USP49-201ENST00000373006 HCG22E2RYF7 251 aa8.72□□□□□ -1.01
USP49-201ENST00000373006 Q1T7F1 81 aa8.72□□□□□ -1.01
USP49-201ENST00000373006 TLX1NBP0CAT3 122 aa8.72□□□□□ -1.01
USP49-201ENST00000373006 KRTAP24-1Q3LI83 254 aa8.71□□□□□ -1.01
USP49-201ENST00000373006 PLA2G2DQ9UNK4 145 aa8.71□□□□□ -1.02
USP49-201ENST00000373006 RPL37AP61513 92 aaKnown RBP8.71□□□□□ -1.02
USP49-201ENST00000373006 DNAH10OSP0CZ25 163 aa8.69□□□□□ -1.02
USP49-201ENST00000373006 IGFL1Q6UW32 110 aa8.69□□□□□ -1.02
USP49-201ENST00000373006 Q5VV11 94 aa8.68□□□□□ -1.02
USP49-201ENST00000373006 A0A087WSZ3 146 aa8.68□□□□□ -1.02
USP49-201ENST00000373006 PRLHP81277 87 aa8.68□□□□□ -1.02
USP49-201ENST00000373006 REG3GQ6UW15 175 aa8.68□□□□□ -1.02
USP49-201ENST00000373006 TENM2Q9NT68 2774 aa8.68□□□□□ -1.02
USP49-201ENST00000373006 IGLV5-37A0A075B6J1 123 aa8.67□□□□□ -1.02
USP49-201ENST00000373006 C16orf90A8MZG2 172 aa8.67□□□□□ -1.02
USP49-201ENST00000373006 MP68P56378 58 aa8.67□□□□□ -1.02
USP49-201ENST00000373006 STAB2Q8WWQ8 2551 aa8.67□□□□□ -1.02
USP49-201ENST00000373006 H3BS24 57 aa8.67□□□□□ -1.02
USP49-201ENST00000373006 B9D2Q9BPU9 175 aa8.67□□□□□ -1.02
USP49-201ENST00000373006 LINC00588Q9Y4M8 146 aa8.66□□□□□ -1.02
USP49-201ENST00000373006 A0A096LNI7 61 aa8.65□□□□□ -1.02
USP49-201ENST00000373006 KTN1-AS1Q86SY8 53 aa8.65□□□□□ -1.02
USP49-201ENST00000373006 IGKV2-24A0A0C4DH68 120 aa8.65□□□□□ -1.03
USP49-201ENST00000373006 UBE2AP49459 152 aa8.63□□□□□ -1.03
USP49-201ENST00000373006 PCOTHQ58A44 107 aa8.63□□□□□ -1.03
USP49-201ENST00000373006 CYP4F30PQ9H0H9 118 aa8.61□□□□□ -1.03
USP49-201ENST00000373006 SPAG11AQ6PDA7 123 aa8.6□□□□□ -1.03
USP49-201ENST00000373006 LCA10Q71F78 164 aa8.59□□□□□ -1.04
USP49-201ENST00000373006 H0Y9P7 68 aa8.58□□□□□ -1.04
USP49-201ENST00000373006 NDUFB1O75438 58 aa8.58□□□□□ -1.04
USP49-201ENST00000373006 COL7A1Q02388 2944 aa8.58□□□□□ -1.04
USP49-201ENST00000373006 Q8N9P0 234 aaPredicted RBP8.57□□□□□ -1.04
USP49-201ENST00000373006 CASC2Q6XLA1 102 aa8.56□□□□□ -1.04
USP49-201ENST00000373006 KRTAP29-1A8MX34 341 aaPredicted RBP8.55□□□□□ -1.04
USP49-201ENST00000373006 C8orf87E5RJ46 101 aa8.53□□□□□ -1.04
USP49-201ENST00000373006 KRTAP11-1Q8IUC1 163 aa8.53□□□□□ -1.04
USP49-201ENST00000373006 LYSTQ99698 3801 aa8.53□□□□□ -1.04
USP49-201ENST00000373006 CNBPP62633 177 aaKnown RBP8.53□□□□□ -1.04
USP49-201ENST00000373006 DNAH10Q8IVF4 4471 aa8.52□□□□□ -1.05
USP49-201ENST00000373006 H0Y9J4 135 aa8.52□□□□□ -1.05
USP49-201ENST00000373006 CHTF8P0CG12 524 aa8.51□□□□□ -1.05
USP49-201ENST00000373006 IGLV8-61A0A075B6I0 122 aa8.51□□□□□ -1.05
USP49-201ENST00000373006 PRAC1Q96KF2 57 aa8.51□□□□□ -1.05
USP49-201ENST00000373006 DNAH1Q9P2D7 4330 aa8.51□□□□□ -1.05
USP49-201ENST00000373006 PHF5AQ7RTV0 110 aaKnown RBP8.51□□□□□ -1.05
USP49-201ENST00000373006 LIMD2Q9BT23 127 aa8.51□□□□□ -1.05
USP49-201ENST00000373006 COA5Q86WW8 74 aa8.5□□□□□ -1.05
USP49-201ENST00000373006 KRTAP1-5Q9BYS1 174 aa8.48□□□□□ -1.05
USP49-201ENST00000373006 A8MWP4 228 aa8.47□□□□□ -1.05
USP49-201ENST00000373006 NDUFS5O43920 106 aa8.47□□□□□ -1.05
USP49-201ENST00000373006 LINC00472Q9H8W2 130 aa8.47□□□□□ -1.05
USP49-201ENST00000373006 ATP11AUNQ6ZP68 121 aa8.46□□□□□ -1.06
USP49-201ENST00000373006 CMYA5Q8N3K9 4069 aa8.45□□□□□ -1.06
USP49-201ENST00000373006 SPANXA2-OT1Q8N9U9 137 aa8.45□□□□□ -1.06
USP49-201ENST00000373006 SPINK7P58062 85 aa8.44□□□□□ -1.06
USP49-201ENST00000373006 C9orf163Q8N9P6 203 aa8.43□□□□□ -1.06
USP49-201ENST00000373006 MDFIQ99750 246 aa8.43□□□□□ -1.06
USP49-201ENST00000373006 MOBPQ13875 183 aa8.42□□□□□ -1.06
USP49-201ENST00000373006 H3BPC8 53 aa8.41□□□□□ -1.06
USP49-201ENST00000373006 UBE2DNLQ8IWF7 75 aa8.41□□□□□ -1.06
USP49-201ENST00000373006 LOC101927531A0A1B0GV80 90 aa8.4□□□□□ -1.06
USP49-201ENST00000373006 ADM2Q7Z4H4 148 aa8.4□□□□□ -1.06
USP49-201ENST00000373006 MMP24-AS1A0A0U1RRL7 71 aa8.4□□□□□ -1.06
USP49-201ENST00000373006 A6NN06 94 aa8.4□□□□□ -1.06
USP49-201ENST00000373006 K7EIL1 84 aa8.4□□□□□ -1.06
USP49-201ENST00000373006 HUWE1Q7Z6Z7 4374 aaKnown RBP8.4□□□□□ -1.07
USP49-201ENST00000373006 C7orf65Q6ZTY9 151 aa8.39□□□□□ -1.07
USP49-201ENST00000373006 IGLV9-49A0A0B4J1Y8 123 aa8.38□□□□□ -1.07
USP49-201ENST00000373006 SPRR1BP22528 89 aa8.38□□□□□ -1.07
USP49-201ENST00000373006 DNAH9Q9NYC9 4486 aa8.37□□□□□ -1.07
USP49-201ENST00000373006 Q75L30 129 aa8.36□□□□□ -1.07
USP49-201ENST00000373006 CDC42SE1Q9NRR8 79 aa8.36□□□□□ -1.07
USP49-201ENST00000373006 IGLV7-46A0A075B6I9 117 aa8.35□□□□□ -1.07
USP49-201ENST00000373006 PANO1I0J062 215 aa8.34□□□□□ -1.07
USP49-201ENST00000373006 PRR26Q8N8Z3 221 aa8.34□□□□□ -1.07
USP49-201ENST00000373006 LINC00313P59037 77 aa8.33□□□□□ -1.08
USP49-201ENST00000373006 DNAH3Q8TD57 4116 aa8.31□□□□□ -1.08
USP49-201ENST00000373006 IGHV6-1A0A0B4J1U7 121 aa8.31□□□□□ -1.08
USP49-201ENST00000373006 Q96NJ1 140 aa8.31□□□□□ -1.08
USP49-201ENST00000373006 C8orf17Q9NRJ1 99 aa8.28□□□□□ -1.08
USP49-201ENST00000373006 DNAH7Q8WXX0 4024 aa8.27□□□□□ -1.09
USP49-201ENST00000373006 C14orf177Q52M58 125 aa8.26□□□□□ -1.09
USP49-201ENST00000373006 ANAPC11Q9NYG5 84 aa8.26□□□□□ -1.09
USP49-201ENST00000373006 KRTAP13-1Q8IUC0 172 aa8.25□□□□□ -1.09
USP49-201ENST00000373006 TP53AIP1Q9HCN2 124 aa8.25□□□□□ -1.09
USP49-201ENST00000373006 A0A087X002 238 aa8.25□□□□□ -1.09
USP49-201ENST00000373006 NOTCH2NLQ7Z3S9 236 aa8.25□□□□□ -1.09
USP49-201ENST00000373006 ASB16-AS1Q495Z4 193 aa8.24□□□□□ -1.09
USP49-201ENST00000373006 HRES1P13985 223 aa8.23□□□□□ -1.09
USP49-201ENST00000373006 TGP01266 2768 aa8.23□□□□□ -1.09
USP49-201ENST00000373006 Q6ZR54 194 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 116.8 ms