RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 PCP2Q8IVA1 136 aa7.13□□□□□ -1.27
VPS29-201ENST00000360579 SVBPQ8N300 66 aa7.13□□□□□ -1.27
VPS29-201ENST00000360579 KRTAP3-1Q9BYR8 98 aa7.13□□□□□ -1.27
VPS29-201ENST00000360579 SERF1AO75920 110 aa7.12□□□□□ -1.27
VPS29-201ENST00000360579 FABP4P15090 132 aa7.12□□□□□ -1.27
VPS29-201ENST00000360579 YPEL4Q96NS1 127 aa7.12□□□□□ -1.27
VPS29-201ENST00000360579 OBSCN-AS1Q96MR7 158 aa7.11□□□□□ -1.27
VPS29-201ENST00000360579 A4D1N5 150 aa7.1□□□□□ -1.27
VPS29-201ENST00000360579 C9orf118A6NHY6 69 aa7.1□□□□□ -1.27
VPS29-201ENST00000360579 NHP2Q9NX24 153 aaKnown RBP7.1□□□□□ -1.27
VPS29-201ENST00000360579 TRBV20-1A0A075B6N2 111 aa7.09□□□□□ -1.27
VPS29-201ENST00000360579 F8WEM9 126 aa7.09□□□□□ -1.27
VPS29-201ENST00000360579 ZNF815PA8K554 130 aa7.06□□□□□ -1.28
VPS29-201ENST00000360579 COPS9Q8WXC6 57 aa7.06□□□□□ -1.28
VPS29-201ENST00000360579 TRGC2P03986 189 aa7.05□□□□□ -1.28
VPS29-201ENST00000360579 Q6JHZ5 121 aa7.05□□□□□ -1.28
VPS29-201ENST00000360579 TRBV7-7A0A0K0K1E9 115 aa7.04□□□□□ -1.28
VPS29-201ENST00000360579 A6NDN8 102 aa7.04□□□□□ -1.28
VPS29-201ENST00000360579 MT2AP02795 61 aa7.04□□□□□ -1.28
VPS29-201ENST00000360579 CLEC2BQ92478 149 aa7.03□□□□□ -1.28
VPS29-201ENST00000360579 Q96NJ1 140 aa7.03□□□□□ -1.28
VPS29-201ENST00000360579 TRAV13-2A0A0B4J235 113 aa7□□□□□ -1.29
VPS29-201ENST00000360579 SYS1-DBNDD2H3BUS1 97 aa7□□□□□ -1.29
VPS29-201ENST00000360579 IFITM1P13164 125 aa7□□□□□ -1.29
VPS29-201ENST00000360579 C20orf166-AS1Q96NR2 134 aa7□□□□□ -1.29
VPS29-201ENST00000360579 LINC00846Q9NV44 126 aa7□□□□□ -1.29
VPS29-201ENST00000360579 LST1O00453 97 aa6.99□□□□□ -1.29
VPS29-201ENST00000360579 SCGB1D4Q6XE38 83 aa6.99□□□□□ -1.29
VPS29-201ENST00000360579 IGFL1Q6UW32 110 aa6.98□□□□□ -1.29
VPS29-201ENST00000360579 Q6ZVH6 145 aa6.98□□□□□ -1.29
VPS29-201ENST00000360579 SLC7A5P1Q8MH63 180 aa6.98□□□□□ -1.29
VPS29-201ENST00000360579 TTTY13Q9BZ97 58 aa6.98□□□□□ -1.29
VPS29-201ENST00000360579 A8MUU9 505 aa6.97□□□□□ -1.29
VPS29-201ENST00000360579 MT1FP04733 61 aa6.97□□□□□ -1.29
VPS29-201ENST00000360579 VAMP3Q15836 100 aa6.97□□□□□ -1.29
VPS29-201ENST00000360579 LINC01545Q5VT33 79 aa6.97□□□□□ -1.29
VPS29-201ENST00000360579 FAM236DA0A1B0GTK5 79 aa6.96□□□□□ -1.3
VPS29-201ENST00000360579 FAM236CP0DP71 79 aa6.96□□□□□ -1.3
VPS29-201ENST00000360579 KRTAP10-10P60014 251 aa6.96□□□□□ -1.3
VPS29-201ENST00000360579 OCIAD2Q56VL3 154 aa6.96□□□□□ -1.3
VPS29-201ENST00000360579 SMIM11BQ8TCY0 68 aa6.96□□□□□ -1.3
VPS29-201ENST00000360579 PET117Q6UWS5 81 aa6.94□□□□□ -1.3
VPS29-201ENST00000360579 Q6ZQY7 126 aa6.94□□□□□ -1.3
VPS29-201ENST00000360579 LINC00575Q6W349 94 aa6.93□□□□□ -1.3
VPS29-201ENST00000360579 MUSTN1Q8IVN3 82 aa6.93□□□□□ -1.3
VPS29-201ENST00000360579 SS18L2Q9UHA2 77 aa6.93□□□□□ -1.3
VPS29-201ENST00000360579 hADV29S1A0JD25 119 aa6.92□□□□□ -1.3
VPS29-201ENST00000360579 SCGB1D1O95968 90 aa6.9□□□□□ -1.3
VPS29-201ENST00000360579 PPDPFLQ8WWR9 84 aa6.9□□□□□ -1.3
VPS29-201ENST00000360579 RBM12B-AS1Q9P1G2 102 aa6.9□□□□□ -1.3
VPS29-201ENST00000360579 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.88□□□□□ -1.31
VPS29-201ENST00000360579 SNHG12Q9BXW3 62 aa6.88□□□□□ -1.31
VPS29-201ENST00000360579 KRTAP19-6Q3LI70 58 aa6.87□□□□□ -1.31
VPS29-201ENST00000360579 MPLKIPQ8TAP9 179 aa6.85□□□□□ -1.31
VPS29-201ENST00000360579 COLCA2A8K830 154 aa6.84□□□□□ -1.31
VPS29-201ENST00000360579 H3BUT2 72 aa6.84□□□□□ -1.31
VPS29-201ENST00000360579 C3orf79P0CE67 100 aa6.84□□□□□ -1.31
VPS29-201ENST00000360579 HRES1P13985 223 aa6.82□□□□□ -1.32
VPS29-201ENST00000360579 DSCR10P59022 87 aa6.82□□□□□ -1.32
VPS29-201ENST00000360579 TEN1Q86WV5 123 aa6.82□□□□□ -1.32
VPS29-201ENST00000360579 KRTAP16-1A8MUX0 517 aa6.81□□□□□ -1.32
VPS29-201ENST00000360579 KRTAP6-3Q3LI67 103 aa6.81□□□□□ -1.32
VPS29-201ENST00000360579 HIST1H2BKO60814 126 aa6.8□□□□□ -1.32
VPS29-201ENST00000360579 HIST1H2BJP06899 126 aa6.8□□□□□ -1.32
VPS29-201ENST00000360579 HIST1H2BOP23527 126 aa6.8□□□□□ -1.32
VPS29-201ENST00000360579 HIST1H2BBP33778 126 aa6.8□□□□□ -1.32
VPS29-201ENST00000360579 HIST1H2BDP58876 126 aa6.8□□□□□ -1.32
VPS29-201ENST00000360579 KRTDAPP60985 99 aa6.8□□□□□ -1.32
VPS29-201ENST00000360579 HIST1H2BCP62807 126 aa6.8□□□□□ -1.32
VPS29-201ENST00000360579 HIST2H2BEQ16778 126 aa6.8□□□□□ -1.32
VPS29-201ENST00000360579 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.8□□□□□ -1.32
VPS29-201ENST00000360579 BVES-AS1Q5T3Y7 98 aa6.8□□□□□ -1.32
VPS29-201ENST00000360579 HIST1H2BHQ93079 126 aa6.8□□□□□ -1.32
VPS29-201ENST00000360579 HIST1H2BNQ99877 126 aa6.8□□□□□ -1.32
VPS29-201ENST00000360579 HIST1H2BMQ99879 126 aa6.8□□□□□ -1.32
VPS29-201ENST00000360579 A0A087WSZ3 146 aa6.79□□□□□ -1.32
VPS29-201ENST00000360579 MTURNQ8N3F0 131 aa6.79□□□□□ -1.32
VPS29-201ENST00000360579 LINC00313P59037 77 aa6.78□□□□□ -1.32
VPS29-201ENST00000360579 C12orf57Q99622 126 aa6.77□□□□□ -1.33
VPS29-201ENST00000360579 SIGMAR1Q99720 223 aa6.77□□□□□ -1.33
VPS29-201ENST00000360579 NEBP20929 6669 aa6.76□□□□□ -1.33
VPS29-201ENST00000360579 NOTCH2NLQ7Z3S9 236 aa6.75□□□□□ -1.33
VPS29-201ENST00000360579 ATOH7Q8N100 152 aa6.75□□□□□ -1.33
VPS29-201ENST00000360579 SNCGO76070 127 aa6.74□□□□□ -1.33
VPS29-201ENST00000360579 SNRPEP62304 92 aaKnown RBP6.74□□□□□ -1.33
VPS29-201ENST00000360579 NDUFV3P56181 108 aaKnown RBP6.72□□□□□ -1.33
VPS29-201ENST00000360579 A8MWP4 228 aa6.7□□□□□ -1.34
VPS29-201ENST00000360579 H3BMG7 143 aa6.69□□□□□ -1.34
VPS29-201ENST00000360579 IGKV4-1P06312 121 aa6.69□□□□□ -1.34
VPS29-201ENST00000360579 COA6Q5JTJ3 125 aaKnown RBP6.69□□□□□ -1.34
VPS29-201ENST00000360579 MUC12Q9UKN1 5478 aa6.65□□□□□ -1.34
VPS29-201ENST00000360579 H0YGX0 51 aa6.65□□□□□ -1.34
VPS29-201ENST00000360579 A0A1W2PNM2 257 aa6.64□□□□□ -1.35
VPS29-201ENST00000360579 HSBP1L1C9JCN9 74 aa6.63□□□□□ -1.35
VPS29-201ENST00000360579 IGHV6-1A0A0B4J1U7 121 aa6.62□□□□□ -1.35
VPS29-201ENST00000360579 TRBV7-4A0A0J9YYF1 115 aa6.62□□□□□ -1.35
VPS29-201ENST00000360579 FABP2P12104 132 aa6.62□□□□□ -1.35
VPS29-201ENST00000360579 Q8N9P0 234 aaPredicted RBP6.62□□□□□ -1.35
VPS29-201ENST00000360579 HIST1H4GQ99525 98 aa6.62□□□□□ -1.35
VPS29-201ENST00000360579 SPINK7P58062 85 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms