RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 LINC00612Q8N6U2 182 aa2.37□□□□□ -2.03
SYNE1-201ENST00000341594 SMR3BP02814 79 aaPredicted RBP2.37□□□□□ -2.03
SYNE1-201ENST00000341594 C16orf95Q9H693 158 aa2.37□□□□□ -2.03
SYNE1-201ENST00000341594 IGKV2D-30A0A075B6S6 120 aa2.36□□□□□ -2.03
SYNE1-201ENST00000341594 IGKV2-30P06310 120 aa2.36□□□□□ -2.03
SYNE1-201ENST00000341594 KRTAP23-1A1A580 65 aa2.36□□□□□ -2.03
SYNE1-201ENST00000341594 APLNQ9ULZ1 77 aa2.36□□□□□ -2.03
SYNE1-201ENST00000341594 Q8NAQ8 132 aa2.36□□□□□ -2.03
SYNE1-201ENST00000341594 ZCCHC13Q8WW36 166 aaKnown RBP2.36□□□□□ -2.03
SYNE1-201ENST00000341594 Q8NBF4 154 aa2.35□□□□□ -2.03
SYNE1-201ENST00000341594 PRR34Q9NV39 138 aa2.35□□□□□ -2.03
SYNE1-201ENST00000341594 C7orf33Q8WU49 177 aa2.35□□□□□ -2.03
SYNE1-201ENST00000341594 FAM104AQ969W3 186 aa2.35□□□□□ -2.03
SYNE1-201ENST00000341594 MOBPQ13875 183 aa2.35□□□□□ -2.03
SYNE1-201ENST00000341594 COX6B2Q6YFQ2 88 aa2.35□□□□□ -2.03
SYNE1-201ENST00000341594 SPART-AS1P0CW21 52 aa2.34□□□□□ -2.03
SYNE1-201ENST00000341594 C22orf24Q9Y442 160 aa2.34□□□□□ -2.03
SYNE1-201ENST00000341594 DEFB113Q30KQ7 82 aa2.34□□□□□ -2.03
SYNE1-201ENST00000341594 A0A1W2PPR1 153 aa2.34□□□□□ -2.04
SYNE1-201ENST00000341594 Q6YL49 198 aa2.34□□□□□ -2.04
SYNE1-201ENST00000341594 LINC00476Q8WZB0 136 aa2.34□□□□□ -2.04
SYNE1-201ENST00000341594 IGLV1-51P01701 117 aa2.33□□□□□ -2.04
SYNE1-201ENST00000341594 FBN1P35555 2871 aaKnown RBP2.33□□□□□ -2.04
SYNE1-201ENST00000341594 DMXL1Q9Y485 3027 aa2.33□□□□□ -2.04
SYNE1-201ENST00000341594 A0A087WSZ3 146 aa2.33□□□□□ -2.04
SYNE1-201ENST00000341594 Q6ZRX8 168 aa2.32□□□□□ -2.04
SYNE1-201ENST00000341594 C16orf90A8MZG2 172 aa2.32□□□□□ -2.04
SYNE1-201ENST00000341594 Q8N9P0 234 aaPredicted RBP2.32□□□□□ -2.04
SYNE1-201ENST00000341594 A8MWP4 228 aa2.32□□□□□ -2.04
SYNE1-201ENST00000341594 LINC01558Q9Y6Z2 57 aa2.32□□□□□ -2.04
SYNE1-201ENST00000341594 C15orf56Q8N910 161 aa2.32□□□□□ -2.04
SYNE1-201ENST00000341594 SPINK7P58062 85 aa2.31□□□□□ -2.04
SYNE1-201ENST00000341594 DSCR10P59022 87 aa2.31□□□□□ -2.04
SYNE1-201ENST00000341594 LINC01556Q5JQF7 62 aa2.31□□□□□ -2.04
SYNE1-201ENST00000341594 IGLV5-52A0A0A0MRZ9 124 aa2.31□□□□□ -2.04
SYNE1-201ENST00000341594 CENPFP49454 3210 aa2.3□□□□□ -2.04
SYNE1-201ENST00000341594 Q5VV11 94 aa2.3□□□□□ -2.04
SYNE1-201ENST00000341594 LINC00483Q53H64 154 aa2.3□□□□□ -2.04
SYNE1-201ENST00000341594 DNAH10OSP0CZ25 163 aa2.3□□□□□ -2.04
SYNE1-201ENST00000341594 NDUFAF8A1L188 74 aa2.3□□□□□ -2.04
SYNE1-201ENST00000341594 Q6ZR54 194 aa2.29□□□□□ -2.04
SYNE1-201ENST00000341594 SPRR1AP35321 89 aa2.29□□□□□ -2.04
SYNE1-201ENST00000341594 SPRR1BP22528 89 aa2.29□□□□□ -2.04
SYNE1-201ENST00000341594 SPACA4Q8TDM5 124 aa2.29□□□□□ -2.04
SYNE1-201ENST00000341594 LY6G6CO95867 125 aa2.29□□□□□ -2.04
SYNE1-201ENST00000341594 K7EQZ3 153 aa2.28□□□□□ -2.04
SYNE1-201ENST00000341594 PRUNE2Q8WUY3 3088 aa2.28□□□□□ -2.04
SYNE1-201ENST00000341594 MRPL34Q9BQ48 92 aaKnown RBP2.28□□□□□ -2.04
SYNE1-201ENST00000341594 KRTAP10-3P60369 221 aa2.27□□□□□ -2.05
SYNE1-201ENST00000341594 Q8NDZ9 215 aa2.27□□□□□ -2.05
SYNE1-201ENST00000341594 DMXL2Q8TDJ6 3036 aa2.27□□□□□ -2.05
SYNE1-201ENST00000341594 SPATA8Q6RVD6 105 aa2.27□□□□□ -2.05
SYNE1-201ENST00000341594 COL12A1Q99715 3063 aa2.27□□□□□ -2.05
SYNE1-201ENST00000341594 A0A1B0GU33 70 aa2.27□□□□□ -2.05
SYNE1-201ENST00000341594 ROMO1P60602 79 aa2.26□□□□□ -2.05
SYNE1-201ENST00000341594 C9orf163Q8N9P6 203 aa2.26□□□□□ -2.05
SYNE1-201ENST00000341594 C5orf42Q9H799 3197 aa2.26□□□□□ -2.05
SYNE1-201ENST00000341594 A6NN06 94 aa2.26□□□□□ -2.05
SYNE1-201ENST00000341594 C19orf73Q9NVV2 129 aa2.26□□□□□ -2.05
SYNE1-201ENST00000341594 CEP350Q5VT06 3117 aa2.26□□□□□ -2.05
SYNE1-201ENST00000341594 OTOGQ6ZRI0 2925 aa2.25□□□□□ -2.05
SYNE1-201ENST00000341594 PLAC8Q9NZF1 115 aa2.25□□□□□ -2.05
SYNE1-201ENST00000341594 ATMQ13315 3056 aa2.25□□□□□ -2.05
SYNE1-201ENST00000341594 LAMA1P25391 3075 aa2.25□□□□□ -2.05
SYNE1-201ENST00000341594 VPS13AQ96RL7 3174 aa2.24□□□□□ -2.05
SYNE1-201ENST00000341594 KRTAP4-16G5E9R7 235 aaPredicted RBP2.24□□□□□ -2.05
SYNE1-201ENST00000341594 Q96NJ1 140 aa2.24□□□□□ -2.05
SYNE1-201ENST00000341594 KRTAP29-1A8MX34 341 aaPredicted RBP2.24□□□□□ -2.05
SYNE1-201ENST00000341594 A0A096LNT2 108 aa2.24□□□□□ -2.05
SYNE1-201ENST00000341594 PCNTO95613 3336 aa2.24□□□□□ -2.05
SYNE1-201ENST00000341594 GOLGB1Q14789 3259 aaKnown RBP2.24□□□□□ -2.05
SYNE1-201ENST00000341594 ODF3L2Q3SX64 289 aa2.23□□□□□ -2.05
SYNE1-201ENST00000341594 PSORS1C2Q9UIG4 136 aa2.23□□□□□ -2.05
SYNE1-201ENST00000341594 Q8N377 158 aa2.23□□□□□ -2.05
SYNE1-201ENST00000341594 LINC00472Q9H8W2 130 aa2.22□□□□□ -2.05
SYNE1-201ENST00000341594 KRTAP25-1Q3LHN0 102 aa2.21□□□□□ -2.05
SYNE1-201ENST00000341594 C10orf95Q9H7T3 257 aa2.21□□□□□ -2.06
SYNE1-201ENST00000341594 KRTAP10-11P60412 298 aa2.2□□□□□ -2.06
SYNE1-201ENST00000341594 LAMA2P24043 3122 aaKnown RBP2.2□□□□□ -2.06
SYNE1-201ENST00000341594 COL7A1Q02388 2944 aa2.19□□□□□ -2.06
SYNE1-201ENST00000341594 A0A1B0GVX0 72 aa2.19□□□□□ -2.06
SYNE1-201ENST00000341594 FREM2Q5SZK8 3169 aa2.18□□□□□ -2.06
SYNE1-201ENST00000341594 C20orf166-AS1Q96NR2 134 aa2.18□□□□□ -2.06
SYNE1-201ENST00000341594 A0A1W2PNM2 257 aa2.18□□□□□ -2.06
SYNE1-201ENST00000341594 GIG44P09565 113 aaPredicted RBP2.18□□□□□ -2.06
SYNE1-201ENST00000341594 HRES1P13985 223 aa2.18□□□□□ -2.06
SYNE1-201ENST00000341594 KRTAP24-1Q3LI83 254 aa2.17□□□□□ -2.06
SYNE1-201ENST00000341594 RPS29P62273 56 aaKnown RBP2.17□□□□□ -2.06
SYNE1-201ENST00000341594 KRTAP11-1Q8IUC1 163 aa2.16□□□□□ -2.06
SYNE1-201ENST00000341594 CELSR1Q9NYQ6 3014 aa2.15□□□□□ -2.06
SYNE1-201ENST00000341594 SRCAPQ6ZRS2 3230 aa2.15□□□□□ -2.07
SYNE1-201ENST00000341594 Q5W150 140 aa2.15□□□□□ -2.07
SYNE1-201ENST00000341594 IGFL1Q6UW32 110 aa2.14□□□□□ -2.07
SYNE1-201ENST00000341594 RPL37P61927 97 aaKnown RBP2.14□□□□□ -2.07
SYNE1-201ENST00000341594 A0A1B0GVY2 172 aa2.13□□□□□ -2.07
SYNE1-201ENST00000341594 TYMSOSQ8TAI1 123 aa2.13□□□□□ -2.07
SYNE1-201ENST00000341594 FBN3Q75N90 2809 aa2.12□□□□□ -2.07
SYNE1-201ENST00000341594 KRTAP26-1Q6PEX3 210 aa2.12□□□□□ -2.07
SYNE1-201ENST00000341594 PLAC4Q8WY50 150 aa2.12□□□□□ -2.07
SYNE1-201ENST00000341594 H1FX-AS1Q4G0G2 97 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms