RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 IGKV4-1P06312 121 aa6.48□□□□□ -1.37
LIMA1-201ENST00000341247 C14orf177Q52M58 125 aa6.48□□□□□ -1.37
LIMA1-201ENST00000341247 Q8NBF4 154 aa6.48□□□□□ -1.37
LIMA1-201ENST00000341247 EPM2AB3EWF7 344 aa6.48□□□□□ -1.37
LIMA1-201ENST00000341247 TRAV7A0A075B6U4 112 aa6.47□□□□□ -1.37
LIMA1-201ENST00000341247 C9orf163Q8N9P6 203 aa6.47□□□□□ -1.37
LIMA1-201ENST00000341247 DNAH5Q8TE73 4624 aa6.47□□□□□ -1.37
LIMA1-201ENST00000341247 UBE2AP49459 152 aa6.47□□□□□ -1.37
LIMA1-201ENST00000341247 IGFL1Q6UW32 110 aa6.46□□□□□ -1.38
LIMA1-201ENST00000341247 DNAH11Q96DT5 4516 aa6.45□□□□□ -1.38
LIMA1-201ENST00000341247 Q6ZRN7 208 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-201ENST00000341247 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-201ENST00000341247 A0A087WSZ3 146 aa6.44□□□□□ -1.38
LIMA1-201ENST00000341247 ALMS1Q8TCU4 4167 aa6.43□□□□□ -1.38
LIMA1-201ENST00000341247 TMEM258P61165 79 aa6.43□□□□□ -1.38
LIMA1-201ENST00000341247 FAM30AQ9NZY2 134 aa6.43□□□□□ -1.38
LIMA1-201ENST00000341247 FAT2Q9NYQ8 4349 aa6.43□□□□□ -1.38
LIMA1-201ENST00000341247 K7EQZ3 153 aa6.42□□□□□ -1.38
LIMA1-201ENST00000341247 SPRR4Q96PI1 79 aa6.41□□□□□ -1.38
LIMA1-201ENST00000341247 PKD1P98161 4303 aa6.41□□□□□ -1.38
LIMA1-201ENST00000341247 DSCR10P59022 87 aa6.41□□□□□ -1.38
LIMA1-201ENST00000341247 RPL37AP61513 92 aaKnown RBP6.41□□□□□ -1.38
LIMA1-201ENST00000341247 A0A087WTM6 91 aa6.4□□□□□ -1.39
LIMA1-201ENST00000341247 J3KT08 172 aa6.4□□□□□ -1.39
LIMA1-201ENST00000341247 H7BZZ5 65 aa6.39□□□□□ -1.39
LIMA1-201ENST00000341247 PKHD1P08F94 4074 aa6.39□□□□□ -1.39
LIMA1-201ENST00000341247 IGLV9-49A0A0B4J1Y8 123 aa6.38□□□□□ -1.39
LIMA1-201ENST00000341247 OXTP01178 125 aa6.38□□□□□ -1.39
LIMA1-201ENST00000341247 WFDC13Q8IUB5 93 aa6.38□□□□□ -1.39
LIMA1-201ENST00000341247 BCE1O60756 84 aa6.38□□□□□ -1.39
LIMA1-201ENST00000341247 TMEM254Q8TBM7 123 aa6.38□□□□□ -1.39
LIMA1-201ENST00000341247 LINC00474Q9P2X8 69 aa6.37□□□□□ -1.39
LIMA1-201ENST00000341247 FAM236DA0A1B0GTK5 79 aa6.37□□□□□ -1.39
LIMA1-201ENST00000341247 RTL8CO15255 209 aa6.37□□□□□ -1.39
LIMA1-201ENST00000341247 LY6G6CO95867 125 aa6.37□□□□□ -1.39
LIMA1-201ENST00000341247 FAM236CP0DP71 79 aa6.37□□□□□ -1.39
LIMA1-201ENST00000341247 HRCT1Q6UXD1 115 aa6.37□□□□□ -1.39
LIMA1-201ENST00000341247 OCR1Q9BZK8 76 aa6.37□□□□□ -1.39
LIMA1-201ENST00000341247 ANAPC11Q9NYG5 84 aa6.36□□□□□ -1.39
LIMA1-201ENST00000341247 KLKP1Q107X0 134 aa6.36□□□□□ -1.39
LIMA1-201ENST00000341247 SPACA4Q8TDM5 124 aa6.36□□□□□ -1.39
LIMA1-201ENST00000341247 LRP1BQ9NZR2 4599 aa6.36□□□□□ -1.39
LIMA1-201ENST00000341247 A0A1B0GW54 56 aa6.34□□□□□ -1.39
LIMA1-201ENST00000341247 IGLV5-52A0A0A0MRZ9 124 aa6.32□□□□□ -1.4
LIMA1-201ENST00000341247 IGLV8-61A0A075B6I0 122 aa6.32□□□□□ -1.4
LIMA1-201ENST00000341247 HCG22E2RYF7 251 aa6.32□□□□□ -1.4
LIMA1-201ENST00000341247 H0Y9J4 135 aa6.32□□□□□ -1.4
LIMA1-201ENST00000341247 PSORS1C2Q9UIG4 136 aa6.32□□□□□ -1.4
LIMA1-201ENST00000341247 SACSQ9NZJ4 4579 aa6.32□□□□□ -1.4
LIMA1-201ENST00000341247 C1orf134Q5TEV5 83 aa6.31□□□□□ -1.4
LIMA1-201ENST00000341247 PKIGQ9Y2B9 76 aa6.31□□□□□ -1.4
LIMA1-201ENST00000341247 Q6ZR54 194 aa6.3□□□□□ -1.4
LIMA1-201ENST00000341247 KRTAP13-1Q8IUC0 172 aa6.3□□□□□ -1.4
LIMA1-201ENST00000341247 SPRR1BP22528 89 aa6.3□□□□□ -1.4
LIMA1-201ENST00000341247 RPS28P62857 69 aaKnown RBP6.29□□□□□ -1.4
LIMA1-201ENST00000341247 VPS13BQ7Z7G8 4022 aa6.29□□□□□ -1.4
LIMA1-201ENST00000341247 A0A0U1RQV1 116 aa6.29□□□□□ -1.4
LIMA1-201ENST00000341247 MOBPQ13875 183 aa6.27□□□□□ -1.41
LIMA1-201ENST00000341247 PRR4Q16378 134 aa6.27□□□□□ -1.41
LIMA1-201ENST00000341247 C4orf26Q17RF5 130 aa6.25□□□□□ -1.41
LIMA1-201ENST00000341247 NDUFC1O43677 76 aa6.25□□□□□ -1.41
LIMA1-201ENST00000341247 LINC00472Q9H8W2 130 aa6.25□□□□□ -1.41
LIMA1-201ENST00000341247 KRTAP10-2P60368 255 aa6.24□□□□□ -1.41
LIMA1-201ENST00000341247 CASC2Q6XLA1 102 aa6.24□□□□□ -1.41
LIMA1-201ENST00000341247 SERP1Q9Y6X1 66 aa6.24□□□□□ -1.41
LIMA1-201ENST00000341247 KMT2CQ8NEZ4 4911 aaKnown RBP6.24□□□□□ -1.41
LIMA1-201ENST00000341247 PRR15Q8IV56 129 aa6.24□□□□□ -1.41
LIMA1-201ENST00000341247 PLAC8Q9NZF1 115 aa6.23□□□□□ -1.41
LIMA1-201ENST00000341247 A8MWP4 228 aa6.23□□□□□ -1.41
LIMA1-201ENST00000341247 ZNF861PO60384 105 aa6.23□□□□□ -1.41
LIMA1-201ENST00000341247 WWC2-AS2Q96NR7 200 aa6.22□□□□□ -1.41
LIMA1-201ENST00000341247 LINC00208Q96KT6 92 aa6.21□□□□□ -1.41
LIMA1-201ENST00000341247 Q5XG85 94 aa6.2□□□□□ -1.42
LIMA1-201ENST00000341247 SPINK6Q6UWN8 80 aa6.2□□□□□ -1.42
LIMA1-201ENST00000341247 KRTAP29-1A8MX34 341 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-201ENST00000341247 CIRBP-AS1Q8TBR5 109 aa6.2□□□□□ -1.42
LIMA1-201ENST00000341247 ZNF706Q9Y5V0 76 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-201ENST00000341247 FAM229BQ4G0N7 80 aa6.19□□□□□ -1.42
LIMA1-201ENST00000341247 IGHV6-1A0A0B4J1U7 121 aa6.19□□□□□ -1.42
LIMA1-201ENST00000341247 NDUFB1O75438 58 aa6.19□□□□□ -1.42
LIMA1-201ENST00000341247 C5orf47Q569G3 176 aa6.19□□□□□ -1.42
LIMA1-201ENST00000341247 LINC00483Q53H64 154 aa6.18□□□□□ -1.42
LIMA1-201ENST00000341247 IGLV7-43P04211 117 aa6.18□□□□□ -1.42
LIMA1-201ENST00000341247 MP68P56378 58 aa6.18□□□□□ -1.42
LIMA1-201ENST00000341247 Q96NJ1 140 aa6.17□□□□□ -1.42
LIMA1-201ENST00000341247 LCE6AA0A183 80 aa6.17□□□□□ -1.42
LIMA1-201ENST00000341247 H0Y9P7 68 aa6.17□□□□□ -1.42
LIMA1-201ENST00000341247 MPLKIPQ8TAP9 179 aa6.17□□□□□ -1.42
LIMA1-201ENST00000341247 MMP24-AS1A0A0U1RRL7 71 aa6.16□□□□□ -1.42
LIMA1-201ENST00000341247 NDUFS5O43920 106 aa6.16□□□□□ -1.42
LIMA1-201ENST00000341247 hDV103S1A0JD37 113 aa6.16□□□□□ -1.42
LIMA1-201ENST00000341247 FP248Q71RG6 208 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-201ENST00000341247 ZCCHC13Q8WW36 166 aaKnown RBP6.16□□□□□ -1.42
LIMA1-201ENST00000341247 CDK2AP2O75956 126 aa6.15□□□□□ -1.43
LIMA1-201ENST00000341247 ATP5EP56381 51 aaPredicted RBP6.15□□□□□ -1.43
LIMA1-201ENST00000341247 A0A087X002 238 aa6.14□□□□□ -1.43
LIMA1-201ENST00000341247 NOTCH2NLQ7Z3S9 236 aa6.14□□□□□ -1.43
LIMA1-201ENST00000341247 KRTAP10-1P60331 282 aa6.14□□□□□ -1.43
LIMA1-201ENST00000341247 FAT1Q14517 4588 aa6.13□□□□□ -1.43
LIMA1-201ENST00000341247 SMIM26A0A096LP01 95 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms