RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 JMJD7-PLA2G4BH0Y9G9 81 aa10.68□□□□□ -0.7
CLDN4-201ENST00000340958 LINC00643Q86TS7 51 aa10.68□□□□□ -0.7
CLDN4-201ENST00000340958 CCDC179H3BU77 68 aa10.66□□□□□ -0.7
CLDN4-201ENST00000340958 CDK2AP2O75956 126 aa10.65□□□□□ -0.7
CLDN4-201ENST00000340958 Q8N377 158 aa10.65□□□□□ -0.71
CLDN4-201ENST00000340958 C14orf132Q9NPU4 83 aa10.65□□□□□ -0.71
CLDN4-201ENST00000340958 RBM3P98179 157 aaKnown RBP10.64□□□□□ -0.71
CLDN4-201ENST00000340958 KRTAP13-1Q8IUC0 172 aa10.64□□□□□ -0.71
CLDN4-201ENST00000340958 ZNF861PO60384 105 aa10.63□□□□□ -0.71
CLDN4-201ENST00000340958 OBSCN-AS1Q96MR7 158 aa10.63□□□□□ -0.71
CLDN4-201ENST00000340958 DNAH8Q96JB1 4490 aa10.63□□□□□ -0.71
CLDN4-201ENST00000340958 IGLV5-48A0A075B6I7 105 aa10.63□□□□□ -0.71
CLDN4-201ENST00000340958 IGLV7-43P04211 117 aa10.63□□□□□ -0.71
CLDN4-201ENST00000340958 LINC01547P58512 204 aaPredicted RBP10.62□□□□□ -0.71
CLDN4-201ENST00000340958 GAGE2AQ6NT46 116 aa10.62□□□□□ -0.71
CLDN4-201ENST00000340958 DSCR8Q96T75 97 aa10.61□□□□□ -0.71
CLDN4-201ENST00000340958 C3orf22Q8N5N4 141 aa10.61□□□□□ -0.71
CLDN4-201ENST00000340958 SS18L2Q9UHA2 77 aa10.61□□□□□ -0.71
CLDN4-201ENST00000340958 F8WEM9 126 aa10.59□□□□□ -0.71
CLDN4-201ENST00000340958 KRTAP17-1Q9BYP8 105 aa10.58□□□□□ -0.72
CLDN4-201ENST00000340958 ZNF706Q9Y5V0 76 aaPredicted RBP10.58□□□□□ -0.72
CLDN4-201ENST00000340958 FAM236AA0A1B0GUQ0 79 aa10.57□□□□□ -0.72
CLDN4-201ENST00000340958 FAM236BA0A1B0GV22 79 aa10.57□□□□□ -0.72
CLDN4-201ENST00000340958 SMR3BP02814 79 aaPredicted RBP10.54□□□□□ -0.72
CLDN4-201ENST00000340958 PDE6GP18545 87 aa10.53□□□□□ -0.72
CLDN4-201ENST00000340958 RPL37AP61513 92 aaKnown RBP10.53□□□□□ -0.72
CLDN4-201ENST00000340958 SPRR4Q96PI1 79 aa10.53□□□□□ -0.72
CLDN4-201ENST00000340958 SMIM29Q86T20 159 aa10.52□□□□□ -0.73
CLDN4-201ENST00000340958 LOC110117498A0A087WWA1 95 aa10.51□□□□□ -0.73
CLDN4-201ENST00000340958 CCKP06307 115 aa10.51□□□□□ -0.73
CLDN4-201ENST00000340958 SPRR1BP22528 89 aa10.51□□□□□ -0.73
CLDN4-201ENST00000340958 KRTAP4-5Q9BYR2 181 aa10.51□□□□□ -0.73
CLDN4-201ENST00000340958 HIST1H4AP62805 103 aaKnown RBP10.5□□□□□ -0.73
CLDN4-201ENST00000340958 Q6ZQT0 140 aa10.5□□□□□ -0.73
CLDN4-201ENST00000340958 Q8N1X5 172 aa10.49□□□□□ -0.73
CLDN4-201ENST00000340958 LINC00846Q9NV44 126 aa10.49□□□□□ -0.73
CLDN4-201ENST00000340958 FAT1Q14517 4588 aa10.49□□□□□ -0.73
CLDN4-201ENST00000340958 ABCA13Q86UQ4 5058 aa10.49□□□□□ -0.73
CLDN4-201ENST00000340958 PCLOQ9Y6V0 5065 aa10.49□□□□□ -0.73
CLDN4-201ENST00000340958 TRBV7-4A0A0J9YYF1 115 aa10.49□□□□□ -0.73
CLDN4-201ENST00000340958 Q6JHZ5 121 aa10.49□□□□□ -0.73
CLDN4-201ENST00000340958 UQCRQO14949 82 aa10.47□□□□□ -0.73
CLDN4-201ENST00000340958 IGLV9-49A0A0B4J1Y8 123 aa10.47□□□□□ -0.73
CLDN4-201ENST00000340958 C9orf153Q5TBE3 101 aa10.46□□□□□ -0.74
CLDN4-201ENST00000340958 LINC00483Q53H64 154 aa10.45□□□□□ -0.74
CLDN4-201ENST00000340958 ANAPC11Q9NYG5 84 aa10.45□□□□□ -0.74
CLDN4-201ENST00000340958 VPS13BQ7Z7G8 4022 aa10.42□□□□□ -0.74
CLDN4-201ENST00000340958 ATOX1O00244 68 aa10.42□□□□□ -0.74
CLDN4-201ENST00000340958 SRRM2Q9UQ35 2752 aaKnown RBP10.41□□□□□ -0.74
CLDN4-201ENST00000340958 IGKV3D-7A0A0C4DH55 119 aa10.41□□□□□ -0.74
CLDN4-201ENST00000340958 COX7CP15954 63 aa10.41□□□□□ -0.74
CLDN4-201ENST00000340958 Q5VSD8 79 aa10.41□□□□□ -0.74
CLDN4-201ENST00000340958 IGLV8-61A0A075B6I0 122 aa10.4□□□□□ -0.74
CLDN4-201ENST00000340958 IGFL1Q6UW32 110 aa10.4□□□□□ -0.74
CLDN4-201ENST00000340958 SMIM20Q8N5G0 67 aa10.4□□□□□ -0.74
CLDN4-201ENST00000340958 A0A0G2JQZ4 141 aa10.39□□□□□ -0.75
CLDN4-201ENST00000340958 SPINK6Q6UWN8 80 aa10.39□□□□□ -0.75
CLDN4-201ENST00000340958 FAM229AH3BQW9 127 aa10.38□□□□□ -0.75
CLDN4-201ENST00000340958 MOBPQ13875 183 aa10.38□□□□□ -0.75
CLDN4-201ENST00000340958 Q8NBF4 154 aa10.37□□□□□ -0.75
CLDN4-201ENST00000340958 PLA2G1BP04054 148 aaKnown RBP10.36□□□□□ -0.75
CLDN4-201ENST00000340958 CRYGAP11844 174 aa10.36□□□□□ -0.75
CLDN4-201ENST00000340958 UBL5Q9BZL1 73 aa10.36□□□□□ -0.75
CLDN4-201ENST00000340958 A0A1W2PNM2 257 aa10.35□□□□□ -0.75
CLDN4-201ENST00000340958 ATP5EP2Q5VTU8 51 aa10.35□□□□□ -0.75
CLDN4-201ENST00000340958 A0A087WVE0 104 aa10.34□□□□□ -0.75
CLDN4-201ENST00000340958 A0A1B0GW54 56 aa10.31□□□□□ -0.76
CLDN4-201ENST00000340958 FAM229BQ4G0N7 80 aa10.3□□□□□ -0.76
CLDN4-201ENST00000340958 SERP2Q8N6R1 65 aa10.3□□□□□ -0.76
CLDN4-201ENST00000340958 NREPQ16612 68 aa10.29□□□□□ -0.76
CLDN4-201ENST00000340958 HRCT1Q6UXD1 115 aa10.29□□□□□ -0.76
CLDN4-201ENST00000340958 RPS28P62857 69 aaKnown RBP10.28□□□□□ -0.76
CLDN4-201ENST00000340958 A0A087WSZ3 146 aa10.27□□□□□ -0.77
CLDN4-201ENST00000340958 A0A087X002 238 aa10.27□□□□□ -0.77
CLDN4-201ENST00000340958 KRTAP1-4P0C5Y4 121 aa10.27□□□□□ -0.77
CLDN4-201ENST00000340958 KRTAP10-4P60372 401 aaPredicted RBP10.27□□□□□ -0.77
CLDN4-201ENST00000340958 Q6ZVQ6 151 aa10.27□□□□□ -0.77
CLDN4-201ENST00000340958 SSBP3-AS1Q7Z2R9 100 aa10.26□□□□□ -0.77
CLDN4-201ENST00000340958 J3KT08 172 aa10.26□□□□□ -0.77
CLDN4-201ENST00000340958 FLG2Q5D862 2391 aaPredicted RBP10.25□□□□□ -0.77
CLDN4-201ENST00000340958 MYCBP2O75592 4640 aa10.24□□□□□ -0.77
CLDN4-201ENST00000340958 TMEM258P61165 79 aa10.23□□□□□ -0.77
CLDN4-201ENST00000340958 CYSTM1Q9H1C7 97 aa10.23□□□□□ -0.77
CLDN4-201ENST00000340958 KRTAP13-2Q52LG2 175 aa10.22□□□□□ -0.77
CLDN4-201ENST00000340958 TYMSOSQ8TAI1 123 aa10.21□□□□□ -0.77
CLDN4-201ENST00000340958 PRR26Q8N8Z3 221 aa10.18□□□□□ -0.78
CLDN4-201ENST00000340958 PKHD1L1Q86WI1 4243 aa10.18□□□□□ -0.78
CLDN4-201ENST00000340958 BPY2O14599 106 aa10.17□□□□□ -0.78
CLDN4-201ENST00000340958 C4orf48Q5BLP8 95 aa10.17□□□□□ -0.78
CLDN4-201ENST00000340958 CD164Q04900 197 aa10.15□□□□□ -0.78
CLDN4-201ENST00000340958 CXCL6P80162 114 aa10.14□□□□□ -0.79
CLDN4-201ENST00000340958 DEFB116Q30KQ4 102 aa10.12□□□□□ -0.79
CLDN4-201ENST00000340958 LRP1Q07954 4544 aaKnown RBP10.11□□□□□ -0.79
CLDN4-201ENST00000340958 DMBT1Q9UGM3 2413 aaPredicted RBP10.08□□□□□ -0.8
CLDN4-201ENST00000340958 TRAV7A0A075B6U4 112 aa10.08□□□□□ -0.8
CLDN4-201ENST00000340958 FAT3Q8TDW7 4589 aa10.08□□□□□ -0.8
CLDN4-201ENST00000340958 LINC00304Q8N9R0 145 aa10.07□□□□□ -0.8
CLDN4-201ENST00000340958 C5orf47Q569G3 176 aa10.05□□□□□ -0.8
CLDN4-201ENST00000340958 Q8N9L7 120 aa10.05□□□□□ -0.8
CLDN4-201ENST00000340958 LIMD2Q9BT23 127 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms