RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 DHRS4-AS1Q9P1J3 65 aa2.56□□□□□ -2
MCF2-201ENST00000338585 TMEM256-PLSCR3K7ERE1 68 aa2.55□□□□□ -2
MCF2-201ENST00000338585 INAFM2P0DMQ5 153 aa2.55□□□□□ -2
MCF2-201ENST00000338585 LINC01547P58512 204 aaPredicted RBP2.55□□□□□ -2
MCF2-201ENST00000338585 Q6ZSA8 131 aa2.55□□□□□ -2
MCF2-201ENST00000338585 HIGD2AQ9BW72 106 aa2.55□□□□□ -2
MCF2-201ENST00000338585 C14orf132Q9NPU4 83 aa2.55□□□□□ -2
MCF2-201ENST00000338585 A0A1B0GVY2 172 aa2.55□□□□□ -2
MCF2-201ENST00000338585 LINC00336Q6ZUF6 198 aa2.55□□□□□ -2
MCF2-201ENST00000338585 C3orf22Q8N5N4 141 aa2.55□□□□□ -2
MCF2-201ENST00000338585 OBSCN-AS1Q96MR7 158 aa2.55□□□□□ -2
MCF2-201ENST00000338585 PSORS1C2Q9UIG4 136 aa2.55□□□□□ -2
MCF2-201ENST00000338585 BCE1O60756 84 aa2.55□□□□□ -2
MCF2-201ENST00000338585 UBE2AP49459 152 aa2.55□□□□□ -2
MCF2-201ENST00000338585 Q8N377 158 aa2.55□□□□□ -2
MCF2-201ENST00000338585 LAMTOR3Q9UHA4 124 aa2.55□□□□□ -2
MCF2-201ENST00000338585 DNAH8Q96JB1 4490 aa2.54□□□□□ -2
MCF2-201ENST00000338585 PKHD1P08F94 4074 aa2.54□□□□□ -2
MCF2-201ENST00000338585 NDUFV3P56181 108 aaKnown RBP2.54□□□□□ -2
MCF2-201ENST00000338585 KRTAP13-1Q8IUC0 172 aa2.54□□□□□ -2
MCF2-201ENST00000338585 IGLV5-48A0A075B6I7 105 aa2.54□□□□□ -2
MCF2-201ENST00000338585 J3QR89 54 aa2.54□□□□□ -2
MCF2-201ENST00000338585 C1orf137Q5JT78 98 aa2.54□□□□□ -2
MCF2-201ENST00000338585 SRRM2Q9UQ35 2752 aaKnown RBP2.53□□□□□ -2
MCF2-201ENST00000338585 H0Y9J4 135 aa2.53□□□□□ -2
MCF2-201ENST00000338585 RYR3Q15413 4870 aa2.53□□□□□ -2
MCF2-201ENST00000338585 JMJD7-PLA2G4BH0Y9G9 81 aa2.53□□□□□ -2
MCF2-201ENST00000338585 GAGE2AQ6NT46 116 aa2.53□□□□□ -2
MCF2-201ENST00000338585 RBM3P98179 157 aaKnown RBP2.52□□□□□ -2.01
MCF2-201ENST00000338585 SMIM29Q86T20 159 aa2.52□□□□□ -2.01
MCF2-201ENST00000338585 VPS25Q9BRG1 176 aa2.52□□□□□ -2.01
MCF2-201ENST00000338585 A0A0G2JQZ4 141 aa2.52□□□□□ -2.01
MCF2-201ENST00000338585 H3BQ85 93 aa2.52□□□□□ -2.01
MCF2-201ENST00000338585 IGLV7-43P04211 117 aa2.51□□□□□ -2.01
MCF2-201ENST00000338585 Q6ZQT0 140 aa2.51□□□□□ -2.01
MCF2-201ENST00000338585 LRP1BQ9NZR2 4599 aa2.51□□□□□ -2.01
MCF2-201ENST00000338585 DYNC1H1Q14204 4646 aaKnown RBP2.51□□□□□ -2.01
MCF2-201ENST00000338585 LOC110117498A0A087WWA1 95 aa2.51□□□□□ -2.01
MCF2-201ENST00000338585 TRBV7-4A0A0J9YYF1 115 aa2.51□□□□□ -2.01
MCF2-201ENST00000338585 ZNF861PO60384 105 aa2.51□□□□□ -2.01
MCF2-201ENST00000338585 CCKP06307 115 aa2.51□□□□□ -2.01
MCF2-201ENST00000338585 XGP55808 180 aa2.51□□□□□ -2.01
MCF2-201ENST00000338585 DSCR8Q96T75 97 aa2.51□□□□□ -2.01
MCF2-201ENST00000338585 ANAPC11Q9NYG5 84 aa2.51□□□□□ -2.01
MCF2-201ENST00000338585 FAM240AA0A1B0GVK7 77 aa2.5□□□□□ -2.01
MCF2-201ENST00000338585 LINC00846Q9NV44 126 aa2.5□□□□□ -2.01
MCF2-201ENST00000338585 SMR3BP02814 79 aaPredicted RBP2.5□□□□□ -2.01
MCF2-201ENST00000338585 SPRR1BP22528 89 aa2.5□□□□□ -2.01
MCF2-201ENST00000338585 SPRR4Q96PI1 79 aa2.5□□□□□ -2.01
MCF2-201ENST00000338585 MT-ATP8P03928 68 aa2.49□□□□□ -2.01
MCF2-201ENST00000338585 A0A1W2PNM2 257 aa2.49□□□□□ -2.01
MCF2-201ENST00000338585 F8WEM9 126 aa2.49□□□□□ -2.01
MCF2-201ENST00000338585 ACYP1P07311 99 aa2.49□□□□□ -2.01
MCF2-201ENST00000338585 IGFL1Q6UW32 110 aa2.49□□□□□ -2.01
MCF2-201ENST00000338585 IGLV9-49A0A0B4J1Y8 123 aa2.48□□□□□ -2.01
MCF2-201ENST00000338585 PDE6GP18545 87 aa2.48□□□□□ -2.01
MCF2-201ENST00000338585 LINC00483Q53H64 154 aa2.48□□□□□ -2.01
MCF2-201ENST00000338585 APOBP04114 4563 aaKnown RBP2.48□□□□□ -2.01
MCF2-201ENST00000338585 A0A0A0MQY5 61 aa2.48□□□□□ -2.01
MCF2-201ENST00000338585 VPS13BQ7Z7G8 4022 aa2.47□□□□□ -2.01
MCF2-201ENST00000338585 IGLV8-61A0A075B6I0 122 aa2.47□□□□□ -2.01
MCF2-201ENST00000338585 RPL37AP61513 92 aaKnown RBP2.47□□□□□ -2.01
MCF2-201ENST00000338585 Q8NBF4 154 aa2.47□□□□□ -2.01
MCF2-201ENST00000338585 ZNF706Q9Y5V0 76 aaPredicted RBP2.47□□□□□ -2.01
MCF2-201ENST00000338585 C9orf153Q5TBE3 101 aa2.47□□□□□ -2.01
MCF2-201ENST00000338585 SIGMAR1Q99720 223 aa2.47□□□□□ -2.01
MCF2-201ENST00000338585 MOBPQ13875 183 aa2.46□□□□□ -2.01
MCF2-201ENST00000338585 IGKV3D-7A0A0C4DH55 119 aa2.46□□□□□ -2.02
MCF2-201ENST00000338585 KRTAP10-4P60372 401 aaPredicted RBP2.46□□□□□ -2.02
MCF2-201ENST00000338585 Q6ZVQ6 151 aa2.46□□□□□ -2.02
MCF2-201ENST00000338585 LINC00643Q86TS7 51 aa2.46□□□□□ -2.02
MCF2-201ENST00000338585 EPPK1P58107 5090 aaKnown RBP2.46□□□□□ -2.02
MCF2-201ENST00000338585 A0A087X002 238 aa2.46□□□□□ -2.02
MCF2-201ENST00000338585 KRTAP1-4P0C5Y4 121 aa2.46□□□□□ -2.02
MCF2-201ENST00000338585 UBL5Q9BZL1 73 aa2.46□□□□□ -2.02
MCF2-201ENST00000338585 FAT1Q14517 4588 aa2.45□□□□□ -2.02
MCF2-201ENST00000338585 CRYGAP11844 174 aa2.45□□□□□ -2.02
MCF2-201ENST00000338585 Q6JHZ5 121 aa2.45□□□□□ -2.02
MCF2-201ENST00000338585 HRCT1Q6UXD1 115 aa2.45□□□□□ -2.02
MCF2-201ENST00000338585 A0A087WSZ3 146 aa2.45□□□□□ -2.02
MCF2-201ENST00000338585 KRTAP13-2Q52LG2 175 aa2.45□□□□□ -2.02
MCF2-201ENST00000338585 KIAA1109Q2LD37 5005 aa2.45□□□□□ -2.02
MCF2-201ENST00000338585 NREPQ16612 68 aa2.44□□□□□ -2.02
MCF2-201ENST00000338585 RYR1P21817 5038 aa2.44□□□□□ -2.02
MCF2-201ENST00000338585 TRBV7-7A0A0K0K1E9 115 aa2.43□□□□□ -2.02
MCF2-201ENST00000338585 DEFB116Q30KQ4 102 aa2.43□□□□□ -2.02
MCF2-201ENST00000338585 SPINK6Q6UWN8 80 aa2.43□□□□□ -2.02
MCF2-201ENST00000338585 HSPG2P98160 4391 aa2.43□□□□□ -2.02
MCF2-201ENST00000338585 A0A087WVE0 104 aa2.43□□□□□ -2.02
MCF2-201ENST00000338585 CDK2AP2O75956 126 aa2.43□□□□□ -2.02
MCF2-201ENST00000338585 PLA2G1BP04054 148 aaKnown RBP2.43□□□□□ -2.02
MCF2-201ENST00000338585 Q6Q795 121 aa2.43□□□□□ -2.02
MCF2-201ENST00000338585 Q8N9L7 120 aa2.43□□□□□ -2.02
MCF2-201ENST00000338585 A0A1B0GW54 56 aa2.42□□□□□ -2.02
MCF2-201ENST00000338585 FAM229BQ4G0N7 80 aa2.42□□□□□ -2.02
MCF2-201ENST00000338585 HIST1H4AP62805 103 aaKnown RBP2.42□□□□□ -2.02
MCF2-201ENST00000338585 Q5VSD8 79 aa2.42□□□□□ -2.02
MCF2-201ENST00000338585 ATP5EP2Q5VTU8 51 aa2.42□□□□□ -2.02
MCF2-201ENST00000338585 PRR26Q8N8Z3 221 aa2.42□□□□□ -2.02
MCF2-201ENST00000338585 BPY2O14599 106 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms