RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 SMIM26A0A096LP01 95 aa9.65□□□□□ -0.86
LIMS1-202ENST00000338045 GHRHP01286 108 aa9.65□□□□□ -0.86
LIMS1-202ENST00000338045 SERP2Q8N6R1 65 aa9.64□□□□□ -0.87
LIMS1-202ENST00000338045 PKD1P98161 4303 aa9.63□□□□□ -0.87
LIMS1-202ENST00000338045 DNAH8Q96JB1 4490 aa9.63□□□□□ -0.87
LIMS1-202ENST00000338045 LAMTOR3Q9UHA4 124 aa9.63□□□□□ -0.87
LIMS1-202ENST00000338045 JMJD7-PLA2G4BH0Y9G9 81 aa9.62□□□□□ -0.87
LIMS1-202ENST00000338045 H0Y9J4 135 aa9.61□□□□□ -0.87
LIMS1-202ENST00000338045 SMCR5Q8TEV8 140 aa9.61□□□□□ -0.87
LIMS1-202ENST00000338045 ERC2-IT1O76042 136 aa9.59□□□□□ -0.87
LIMS1-202ENST00000338045 LINC01547P58512 204 aaPredicted RBP9.59□□□□□ -0.87
LIMS1-202ENST00000338045 PRLHP81277 87 aa9.59□□□□□ -0.87
LIMS1-202ENST00000338045 Q6ZSA8 131 aa9.59□□□□□ -0.87
LIMS1-202ENST00000338045 IGLV5-48A0A075B6I7 105 aa9.58□□□□□ -0.88
LIMS1-202ENST00000338045 BCE1O60756 84 aa9.58□□□□□ -0.88
LIMS1-202ENST00000338045 C14orf132Q9NPU4 83 aa9.58□□□□□ -0.88
LIMS1-202ENST00000338045 Q8N377 158 aa9.57□□□□□ -0.88
LIMS1-202ENST00000338045 BRK1Q8WUW1 75 aa9.57□□□□□ -0.88
LIMS1-202ENST00000338045 FAM30AQ9NZY2 134 aa9.57□□□□□ -0.88
LIMS1-202ENST00000338045 A0A0U1RQV1 116 aa9.57□□□□□ -0.88
LIMS1-202ENST00000338045 KRTAP10-1P60331 282 aa9.57□□□□□ -0.88
LIMS1-202ENST00000338045 RYR2Q92736 4967 aa9.57□□□□□ -0.88
LIMS1-202ENST00000338045 KRTAP13-1Q8IUC0 172 aa9.56□□□□□ -0.88
LIMS1-202ENST00000338045 ST20-AS1Q8NBB2 130 aa9.56□□□□□ -0.88
LIMS1-202ENST00000338045 CYSTM1Q9H1C7 97 aa9.55□□□□□ -0.88
LIMS1-202ENST00000338045 KMT2CQ8NEZ4 4911 aaKnown RBP9.55□□□□□ -0.88
LIMS1-202ENST00000338045 RBM3P98179 157 aaKnown RBP9.54□□□□□ -0.88
LIMS1-202ENST00000338045 PRR15Q8IV56 129 aa9.53□□□□□ -0.88
LIMS1-202ENST00000338045 DEFB105AQ8NG35 78 aa9.53□□□□□ -0.88
LIMS1-202ENST00000338045 CIRBP-AS1Q8TBR5 109 aa9.53□□□□□ -0.88
LIMS1-202ENST00000338045 HIGD2AQ9BW72 106 aa9.53□□□□□ -0.88
LIMS1-202ENST00000338045 UBE2AP49459 152 aa9.53□□□□□ -0.88
LIMS1-202ENST00000338045 PSORS1C2Q9UIG4 136 aa9.53□□□□□ -0.88
LIMS1-202ENST00000338045 LOC110117498A0A087WWA1 95 aa9.51□□□□□ -0.89
LIMS1-202ENST00000338045 SCXQ7RTU7 201 aa9.51□□□□□ -0.89
LIMS1-202ENST00000338045 CCKP06307 115 aa9.5□□□□□ -0.89
LIMS1-202ENST00000338045 TRBV7-4A0A0J9YYF1 115 aa9.49□□□□□ -0.89
LIMS1-202ENST00000338045 A0A1B0GVY2 172 aa9.49□□□□□ -0.89
LIMS1-202ENST00000338045 Q6ZQT0 140 aa9.49□□□□□ -0.89
LIMS1-202ENST00000338045 PDE6GP18545 87 aa9.49□□□□□ -0.89
LIMS1-202ENST00000338045 FP248Q71RG6 208 aaPredicted RBP9.47□□□□□ -0.89
LIMS1-202ENST00000338045 SMIM29Q86T20 159 aa9.47□□□□□ -0.89
LIMS1-202ENST00000338045 ATP5EP56381 51 aaPredicted RBP9.47□□□□□ -0.89
LIMS1-202ENST00000338045 SPRR1BP22528 89 aa9.46□□□□□ -0.9
LIMS1-202ENST00000338045 C1orf137Q5JT78 98 aa9.46□□□□□ -0.9
LIMS1-202ENST00000338045 PKHD1P08F94 4074 aa9.46□□□□□ -0.9
LIMS1-202ENST00000338045 LRP1BQ9NZR2 4599 aa9.45□□□□□ -0.9
LIMS1-202ENST00000338045 ZNF861PO60384 105 aa9.44□□□□□ -0.9
LIMS1-202ENST00000338045 HAMPP81172 84 aa9.42□□□□□ -0.9
LIMS1-202ENST00000338045 DYNC1H1Q14204 4646 aaKnown RBP9.42□□□□□ -0.9
LIMS1-202ENST00000338045 IGLV7-43P04211 117 aa9.41□□□□□ -0.9
LIMS1-202ENST00000338045 LINC00846Q9NV44 126 aa9.41□□□□□ -0.9
LIMS1-202ENST00000338045 SRRM2Q9UQ35 2752 aaKnown RBP9.4□□□□□ -0.9
LIMS1-202ENST00000338045 IGLV8-61A0A075B6I0 122 aa9.39□□□□□ -0.91
LIMS1-202ENST00000338045 Q6JHZ5 121 aa9.39□□□□□ -0.91
LIMS1-202ENST00000338045 SPRR4Q96PI1 79 aa9.38□□□□□ -0.91
LIMS1-202ENST00000338045 F8WEM9 126 aa9.38□□□□□ -0.91
LIMS1-202ENST00000338045 LINC00483Q53H64 154 aa9.37□□□□□ -0.91
LIMS1-202ENST00000338045 ZNF706Q9Y5V0 76 aaPredicted RBP9.37□□□□□ -0.91
LIMS1-202ENST00000338045 A0A1W2PNM2 257 aa9.34□□□□□ -0.91
LIMS1-202ENST00000338045 RYR3Q15413 4870 aa9.33□□□□□ -0.92
LIMS1-202ENST00000338045 A0A1B0GW54 56 aa9.32□□□□□ -0.92
LIMS1-202ENST00000338045 IGFL1Q6UW32 110 aa9.32□□□□□ -0.92
LIMS1-202ENST00000338045 Q8NBF4 154 aa9.32□□□□□ -0.92
LIMS1-202ENST00000338045 H7BZZ5 65 aa9.32□□□□□ -0.92
LIMS1-202ENST00000338045 NDUFC1O43677 76 aa9.32□□□□□ -0.92
LIMS1-202ENST00000338045 APOBP04114 4563 aaKnown RBP9.31□□□□□ -0.92
LIMS1-202ENST00000338045 UBL5Q9BZL1 73 aa9.31□□□□□ -0.92
LIMS1-202ENST00000338045 ATP5EP2Q5VTU8 51 aa9.3□□□□□ -0.92
LIMS1-202ENST00000338045 VPS13BQ7Z7G8 4022 aa9.29□□□□□ -0.92
LIMS1-202ENST00000338045 RBM12B-AS1Q9P1G2 102 aa9.28□□□□□ -0.92
LIMS1-202ENST00000338045 H3BS24 57 aa9.28□□□□□ -0.92
LIMS1-202ENST00000338045 KLKP1Q107X0 134 aa9.28□□□□□ -0.92
LIMS1-202ENST00000338045 Q6ZVQ6 151 aa9.28□□□□□ -0.92
LIMS1-202ENST00000338045 A0A0G2JQZ4 141 aa9.27□□□□□ -0.93
LIMS1-202ENST00000338045 RPL37AP61513 92 aaKnown RBP9.25□□□□□ -0.93
LIMS1-202ENST00000338045 KTN1-AS1Q86SY8 53 aa9.25□□□□□ -0.93
LIMS1-202ENST00000338045 ANAPC11Q9NYG5 84 aa9.24□□□□□ -0.93
LIMS1-202ENST00000338045 IGLV9-49A0A0B4J1Y8 123 aa9.23□□□□□ -0.93
LIMS1-202ENST00000338045 C20orf197Q8N268 126 aa9.23□□□□□ -0.93
LIMS1-202ENST00000338045 IGKV3D-7A0A0C4DH55 119 aa9.21□□□□□ -0.93
LIMS1-202ENST00000338045 TRAV7A0A075B6U4 112 aa9.21□□□□□ -0.94
LIMS1-202ENST00000338045 NREPQ16612 68 aa9.2□□□□□ -0.94
LIMS1-202ENST00000338045 MOBPQ13875 183 aa9.19□□□□□ -0.94
LIMS1-202ENST00000338045 FAT1Q14517 4588 aa9.19□□□□□ -0.94
LIMS1-202ENST00000338045 NDUFS5O43920 106 aa9.19□□□□□ -0.94
LIMS1-202ENST00000338045 SMR3BP02814 79 aaPredicted RBP9.19□□□□□ -0.94
LIMS1-202ENST00000338045 CXCL6P80162 114 aa9.18□□□□□ -0.94
LIMS1-202ENST00000338045 A0A087WSZ3 146 aa9.17□□□□□ -0.94
LIMS1-202ENST00000338045 KRTAP1-4P0C5Y4 121 aa9.17□□□□□ -0.94
LIMS1-202ENST00000338045 FAM229BQ4G0N7 80 aa9.17□□□□□ -0.94
LIMS1-202ENST00000338045 KRTAP10-4P60372 401 aaPredicted RBP9.16□□□□□ -0.94
LIMS1-202ENST00000338045 SPINK6Q6UWN8 80 aa9.16□□□□□ -0.94
LIMS1-202ENST00000338045 A0A087X002 238 aa9.13□□□□□ -0.95
LIMS1-202ENST00000338045 SSBP3-AS1Q7Z2R9 100 aa9.13□□□□□ -0.95
LIMS1-202ENST00000338045 C8orf87E5RJ46 101 aa9.12□□□□□ -0.95
LIMS1-202ENST00000338045 A0A087WVE0 104 aa9.11□□□□□ -0.95
LIMS1-202ENST00000338045 BPY2O14599 106 aa9.11□□□□□ -0.95
LIMS1-202ENST00000338045 KRTAP13-2Q52LG2 175 aa9.11□□□□□ -0.95
LIMS1-202ENST00000338045 CDK2AP2O75956 126 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms