RNA–Protein interactions for RNA: ENST00000331148.5

CLSTN3-202, Transcript of calsyntenin 3, humanhuman

TSL 1 (best)

Gene CLSTN3, Length 2,288 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-202ENST00000331148 IGLV5-37A0A075B6J1 123 aa11.55□□□□□ -0.56
CLSTN3-202ENST00000331148 TLX1NBP0CAT3 122 aa11.55□□□□□ -0.56
CLSTN3-202ENST00000331148 LINC00476Q8WZB0 136 aa11.53□□□□□ -0.56
CLSTN3-202ENST00000331148 MP68P56378 58 aa11.53□□□□□ -0.56
CLSTN3-202ENST00000331148 WFDC13Q8IUB5 93 aa11.52□□□□□ -0.56
CLSTN3-202ENST00000331148 LINC01556Q5JQF7 62 aa11.52□□□□□ -0.57
CLSTN3-202ENST00000331148 B9D2Q9BPU9 175 aa11.52□□□□□ -0.57
CLSTN3-202ENST00000331148 UBE2BP63146 152 aa11.51□□□□□ -0.57
CLSTN3-202ENST00000331148 Q5VV11 94 aa11.51□□□□□ -0.57
CLSTN3-202ENST00000331148 KRTAP7-1Q8IUC3 87 aa11.51□□□□□ -0.57
CLSTN3-202ENST00000331148 A0A0G2JQZ4 141 aa11.5□□□□□ -0.57
CLSTN3-202ENST00000331148 A0A1W2PNN7 141 aa11.5□□□□□ -0.57
CLSTN3-202ENST00000331148 DEFB116Q30KQ4 102 aa11.5□□□□□ -0.57
CLSTN3-202ENST00000331148 LINC00208Q96KT6 92 aa11.48□□□□□ -0.57
CLSTN3-202ENST00000331148 A8MU10 97 aa11.48□□□□□ -0.57
CLSTN3-202ENST00000331148 IGFL1Q6UW32 110 aa11.47□□□□□ -0.57
CLSTN3-202ENST00000331148 MRPL55Q7Z7F7 128 aaKnown RBP11.46□□□□□ -0.57
CLSTN3-202ENST00000331148 HUWE1Q7Z6Z7 4374 aaKnown RBP11.46□□□□□ -0.58
CLSTN3-202ENST00000331148 SPANXA2-OT1Q8N9U9 137 aa11.44□□□□□ -0.58
CLSTN3-202ENST00000331148 KRTAP29-1A8MX34 341 aaPredicted RBP11.44□□□□□ -0.58
CLSTN3-202ENST00000331148 A0A087WSZ3 146 aa11.42□□□□□ -0.58
CLSTN3-202ENST00000331148 Q8N9P0 234 aaPredicted RBP11.42□□□□□ -0.58
CLSTN3-202ENST00000331148 H0Y9P7 68 aa11.42□□□□□ -0.58
CLSTN3-202ENST00000331148 REG3GQ6UW15 175 aa11.42□□□□□ -0.58
CLSTN3-202ENST00000331148 UBE2AP49459 152 aa11.41□□□□□ -0.58
CLSTN3-202ENST00000331148 RPL37AP61513 92 aaKnown RBP11.41□□□□□ -0.58
CLSTN3-202ENST00000331148 H3BPC8 53 aa11.4□□□□□ -0.58
CLSTN3-202ENST00000331148 CHKB-CPT1BH3BT56 60 aa11.4□□□□□ -0.58
CLSTN3-202ENST00000331148 LIMD2Q9BT23 127 aa11.4□□□□□ -0.58
CLSTN3-202ENST00000331148 CASC10Q5T4H9 136 aa11.38□□□□□ -0.59
CLSTN3-202ENST00000331148 PRR15LQ9BU68 103 aa11.38□□□□□ -0.59
CLSTN3-202ENST00000331148 IGLV8-61A0A075B6I0 122 aa11.37□□□□□ -0.59
CLSTN3-202ENST00000331148 DNAH10OSP0CZ25 163 aa11.37□□□□□ -0.59
CLSTN3-202ENST00000331148 CASC2Q6XLA1 102 aa11.37□□□□□ -0.59
CLSTN3-202ENST00000331148 CD164Q04900 197 aa11.36□□□□□ -0.59
CLSTN3-202ENST00000331148 DNAH9Q9NYC9 4486 aa11.35□□□□□ -0.59
CLSTN3-202ENST00000331148 C16orf90A8MZG2 172 aa11.35□□□□□ -0.59
CLSTN3-202ENST00000331148 COL7A1Q02388 2944 aa11.35□□□□□ -0.59
CLSTN3-202ENST00000331148 CNBPP62633 177 aaKnown RBP11.34□□□□□ -0.59
CLSTN3-202ENST00000331148 C9orf163Q8N9P6 203 aa11.34□□□□□ -0.59
CLSTN3-202ENST00000331148 LINC00588Q9Y4M8 146 aa11.34□□□□□ -0.59
CLSTN3-202ENST00000331148 DNHD1Q96M86 4753 aa11.32□□□□□ -0.6
CLSTN3-202ENST00000331148 PRLHP81277 87 aa11.32□□□□□ -0.6
CLSTN3-202ENST00000331148 Q75L30 129 aa11.29□□□□□ -0.6
CLSTN3-202ENST00000331148 A8MWP4 228 aa11.28□□□□□ -0.6
CLSTN3-202ENST00000331148 KTN1-AS1Q86SY8 53 aa11.28□□□□□ -0.6
CLSTN3-202ENST00000331148 COA5Q86WW8 74 aa11.28□□□□□ -0.6
CLSTN3-202ENST00000331148 LCA10Q71F78 164 aa11.27□□□□□ -0.61
CLSTN3-202ENST00000331148 STAB2Q8WWQ8 2551 aa11.27□□□□□ -0.61
CLSTN3-202ENST00000331148 SPTSSBQ8NFR3 76 aa11.26□□□□□ -0.61
CLSTN3-202ENST00000331148 LOC101927531A0A1B0GV80 90 aa11.25□□□□□ -0.61
CLSTN3-202ENST00000331148 LINC00472Q9H8W2 130 aa11.24□□□□□ -0.61
CLSTN3-202ENST00000331148 ATP11AUNQ6ZP68 121 aa11.24□□□□□ -0.61
CLSTN3-202ENST00000331148 A6NED7 52 aa11.23□□□□□ -0.61
CLSTN3-202ENST00000331148 IGLV7-46A0A075B6I9 117 aa11.22□□□□□ -0.61
CLSTN3-202ENST00000331148 APLNQ9ULZ1 77 aa11.22□□□□□ -0.61
CLSTN3-202ENST00000331148 MMP24-AS1A0A0U1RRL7 71 aa11.19□□□□□ -0.62
CLSTN3-202ENST00000331148 A0A096LNI7 61 aa11.18□□□□□ -0.62
CLSTN3-202ENST00000331148 NUPR2A6NF83 97 aa11.18□□□□□ -0.62
CLSTN3-202ENST00000331148 A6NN06 94 aa11.18□□□□□ -0.62
CLSTN3-202ENST00000331148 MEGF8Q7Z7M0 2845 aa11.17□□□□□ -0.62
CLSTN3-202ENST00000331148 RBM12B-AS1Q9P1G2 102 aa11.17□□□□□ -0.62
CLSTN3-202ENST00000331148 IGKV2-24A0A0C4DH68 120 aa11.16□□□□□ -0.62
CLSTN3-202ENST00000331148 H0Y9J4 135 aa11.16□□□□□ -0.62
CLSTN3-202ENST00000331148 UBE2DNLQ8IWF7 75 aa11.16□□□□□ -0.62
CLSTN3-202ENST00000331148 CDC42SE1Q9NRR8 79 aa11.16□□□□□ -0.62
CLSTN3-202ENST00000331148 SPRR1BP22528 89 aa11.15□□□□□ -0.62
CLSTN3-202ENST00000331148 DNAH1Q9P2D7 4330 aa11.15□□□□□ -0.62
CLSTN3-202ENST00000331148 PCOTHQ58A44 107 aa11.14□□□□□ -0.63
CLSTN3-202ENST00000331148 PRKDCP78527 4128 aaKnown RBP11.14□□□□□ -0.63
CLSTN3-202ENST00000331148 NDUFS5O43920 106 aa11.14□□□□□ -0.63
CLSTN3-202ENST00000331148 PHF5AQ7RTV0 110 aaKnown RBP11.12□□□□□ -0.63
CLSTN3-202ENST00000331148 LINC01558Q9Y6Z2 57 aa11.11□□□□□ -0.63
CLSTN3-202ENST00000331148 PLAC8Q9NZF1 115 aa11.11□□□□□ -0.63
CLSTN3-202ENST00000331148 DYNC2H1Q8NCM8 4307 aaKnown RBP11.1□□□□□ -0.63
CLSTN3-202ENST00000331148 KRTAP11-1Q8IUC1 163 aa11.1□□□□□ -0.63
CLSTN3-202ENST00000331148 SPAG11AQ6PDA7 123 aa11.09□□□□□ -0.63
CLSTN3-202ENST00000331148 CSMD3Q7Z407 3707 aa11.07□□□□□ -0.64
CLSTN3-202ENST00000331148 KRTAP1-5Q9BYS1 174 aa11.06□□□□□ -0.64
CLSTN3-202ENST00000331148 ASB16-AS1Q495Z4 193 aa11.06□□□□□ -0.64
CLSTN3-202ENST00000331148 TP53AIP1Q9HCN2 124 aa11.06□□□□□ -0.64
CLSTN3-202ENST00000331148 MOBPQ13875 183 aa11.05□□□□□ -0.64
CLSTN3-202ENST00000331148 Q6ZR54 194 aa11.04□□□□□ -0.64
CLSTN3-202ENST00000331148 C7orf65Q6ZTY9 151 aa11.02□□□□□ -0.64
CLSTN3-202ENST00000331148 PLECQ15149 4684 aaKnown RBP11.02□□□□□ -0.65
CLSTN3-202ENST00000331148 LYSTQ99698 3801 aa11.02□□□□□ -0.65
CLSTN3-202ENST00000331148 Q96NJ1 140 aa11.01□□□□□ -0.65
CLSTN3-202ENST00000331148 FBN3Q75N90 2809 aa11.01□□□□□ -0.65
CLSTN3-202ENST00000331148 TENM2Q9NT68 2774 aa11□□□□□ -0.65
CLSTN3-202ENST00000331148 CHTF8P0CG12 524 aa11□□□□□ -0.65
CLSTN3-202ENST00000331148 SPINK7P58062 85 aa11□□□□□ -0.65
CLSTN3-202ENST00000331148 DNAH7Q8WXX0 4024 aa11□□□□□ -0.65
CLSTN3-202ENST00000331148 HRES1P13985 223 aa11□□□□□ -0.65
CLSTN3-202ENST00000331148 C8orf17Q9NRJ1 99 aa10.99□□□□□ -0.65
CLSTN3-202ENST00000331148 SRRM2Q9UQ35 2752 aaKnown RBP10.99□□□□□ -0.65
CLSTN3-202ENST00000331148 NBDYA0A0U1RRE5 68 aa10.98□□□□□ -0.65
CLSTN3-202ENST00000331148 STARD9Q9P2P6 4700 aa10.97□□□□□ -0.65
CLSTN3-202ENST00000331148 WWC2-AS2Q96NR7 200 aa10.92□□□□□ -0.66
CLSTN3-202ENST00000331148 IGHV6-1A0A0B4J1U7 121 aa10.91□□□□□ -0.66
CLSTN3-202ENST00000331148 A0A1B0GVX0 72 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms