RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 IGLV5-48A0A075B6I7 105 aa7.15□□□□□ -1.27
CUX1-202ENST00000292538 BPY2O14599 106 aa7.14□□□□□ -1.27
CUX1-202ENST00000292538 DNAH2Q9P225 4427 aa7.14□□□□□ -1.27
CUX1-202ENST00000292538 TNP2Q05952 138 aa7.14□□□□□ -1.27
CUX1-202ENST00000292538 SMIM29Q86T20 159 aa7.14□□□□□ -1.27
CUX1-202ENST00000292538 Q6ZR54 194 aa7.13□□□□□ -1.27
CUX1-202ENST00000292538 PKIGQ9Y2B9 76 aa7.13□□□□□ -1.27
CUX1-202ENST00000292538 SPACA4Q8TDM5 124 aa7.12□□□□□ -1.27
CUX1-202ENST00000292538 IGLV9-49A0A0B4J1Y8 123 aa7.11□□□□□ -1.27
CUX1-202ENST00000292538 COX7CP15954 63 aa7.11□□□□□ -1.27
CUX1-202ENST00000292538 IGFL1Q6UW32 110 aa7.11□□□□□ -1.27
CUX1-202ENST00000292538 ANAPC11Q9NYG5 84 aa7.11□□□□□ -1.27
CUX1-202ENST00000292538 UQCRQO14949 82 aa7.11□□□□□ -1.27
CUX1-202ENST00000292538 Q8NBF4 154 aa7.11□□□□□ -1.27
CUX1-202ENST00000292538 FRAS1Q86XX4 4008 aa7.1□□□□□ -1.27
CUX1-202ENST00000292538 A0A087WSZ3 146 aa7.1□□□□□ -1.27
CUX1-202ENST00000292538 CXCL6P80162 114 aa7.1□□□□□ -1.27
CUX1-202ENST00000292538 BCE1O60756 84 aa7.1□□□□□ -1.27
CUX1-202ENST00000292538 HRCT1Q6UXD1 115 aa7.09□□□□□ -1.27
CUX1-202ENST00000292538 SERP2Q8N6R1 65 aa7.09□□□□□ -1.27
CUX1-202ENST00000292538 HECTD4Q9Y4D8 3996 aa7.09□□□□□ -1.27
CUX1-202ENST00000292538 H3BS24 57 aa7.09□□□□□ -1.27
CUX1-202ENST00000292538 WWC2-AS2Q96NR7 200 aa7.09□□□□□ -1.27
CUX1-202ENST00000292538 PRO0628Q9UI54 55 aa7.08□□□□□ -1.28
CUX1-202ENST00000292538 OXTP01178 125 aa7.08□□□□□ -1.28
CUX1-202ENST00000292538 CYSTM1Q9H1C7 97 aa7.08□□□□□ -1.28
CUX1-202ENST00000292538 PSORS1C2Q9UIG4 136 aa7.07□□□□□ -1.28
CUX1-202ENST00000292538 KRTAP10-2P60368 255 aa7.07□□□□□ -1.28
CUX1-202ENST00000292538 C20orf197Q8N268 126 aa7.07□□□□□ -1.28
CUX1-202ENST00000292538 J3KT08 172 aa7.06□□□□□ -1.28
CUX1-202ENST00000292538 DNAH6Q9C0G6 4158 aa7.06□□□□□ -1.28
CUX1-202ENST00000292538 IGKV4-1P06312 121 aa7.04□□□□□ -1.28
CUX1-202ENST00000292538 RPL37AP61513 92 aaKnown RBP7.04□□□□□ -1.28
CUX1-202ENST00000292538 FAM30AQ9NZY2 134 aa7.04□□□□□ -1.28
CUX1-202ENST00000292538 C1orf195Q5TG92 126 aa7.04□□□□□ -1.28
CUX1-202ENST00000292538 SNURFQ9Y675 71 aa7.04□□□□□ -1.28
CUX1-202ENST00000292538 CRYGAP11844 174 aa7.03□□□□□ -1.28
CUX1-202ENST00000292538 HYDINQ4G0P3 5121 aa7.02□□□□□ -1.29
CUX1-202ENST00000292538 K7EQZ3 153 aa7.02□□□□□ -1.29
CUX1-202ENST00000292538 SPRR4Q96PI1 79 aa7.02□□□□□ -1.29
CUX1-202ENST00000292538 RPS28P62857 69 aaKnown RBP7.02□□□□□ -1.29
CUX1-202ENST00000292538 H0Y9J4 135 aa7.01□□□□□ -1.29
CUX1-202ENST00000292538 FAM236DA0A1B0GTK5 79 aa7□□□□□ -1.29
CUX1-202ENST00000292538 FAM236CP0DP71 79 aa7□□□□□ -1.29
CUX1-202ENST00000292538 PLAC8Q9NZF1 115 aa6.99□□□□□ -1.29
CUX1-202ENST00000292538 DSCR10P59022 87 aa6.99□□□□□ -1.29
CUX1-202ENST00000292538 MOBPQ13875 183 aa6.99□□□□□ -1.29
CUX1-202ENST00000292538 KRTAP13-1Q8IUC0 172 aa6.99□□□□□ -1.29
CUX1-202ENST00000292538 CIRBP-AS1Q8TBR5 109 aa6.99□□□□□ -1.29
CUX1-202ENST00000292538 WFDC13Q8IUB5 93 aa6.98□□□□□ -1.29
CUX1-202ENST00000292538 TRAV7A0A075B6U4 112 aa6.97□□□□□ -1.29
CUX1-202ENST00000292538 DNAH11Q96DT5 4516 aa6.97□□□□□ -1.29
CUX1-202ENST00000292538 DNAH17Q9UFH2 4485 aa6.97□□□□□ -1.29
CUX1-202ENST00000292538 ZNF861PO60384 105 aa6.97□□□□□ -1.29
CUX1-202ENST00000292538 DNAH8Q96JB1 4490 aa6.95□□□□□ -1.3
CUX1-202ENST00000292538 KRTAP10-1P60331 282 aa6.95□□□□□ -1.3
CUX1-202ENST00000292538 IGLV8-61A0A075B6I0 122 aa6.94□□□□□ -1.3
CUX1-202ENST00000292538 SPRR1BP22528 89 aa6.94□□□□□ -1.3
CUX1-202ENST00000292538 A0A1B0GW54 56 aa6.94□□□□□ -1.3
CUX1-202ENST00000292538 IGLV7-43P04211 117 aa6.92□□□□□ -1.3
CUX1-202ENST00000292538 ZNF706Q9Y5V0 76 aaPredicted RBP6.92□□□□□ -1.3
CUX1-202ENST00000292538 CD164Q04900 197 aa6.91□□□□□ -1.3
CUX1-202ENST00000292538 HCG22E2RYF7 251 aa6.9□□□□□ -1.3
CUX1-202ENST00000292538 KRTAP21-3Q3LHN1 58 aa6.9□□□□□ -1.3
CUX1-202ENST00000292538 SPINK6Q6UWN8 80 aa6.9□□□□□ -1.3
CUX1-202ENST00000292538 DNAH5Q8TE73 4624 aa6.9□□□□□ -1.31
CUX1-202ENST00000292538 TMEM254Q8TBM7 123 aa6.89□□□□□ -1.31
CUX1-202ENST00000292538 PRR26Q8N8Z3 221 aa6.88□□□□□ -1.31
CUX1-202ENST00000292538 OCR1Q9BZK8 76 aa6.88□□□□□ -1.31
CUX1-202ENST00000292538 Q5XG85 94 aa6.87□□□□□ -1.31
CUX1-202ENST00000292538 TMEM258P61165 79 aa6.87□□□□□ -1.31
CUX1-202ENST00000292538 PKHD1P08F94 4074 aa6.87□□□□□ -1.31
CUX1-202ENST00000292538 LRP1BQ9NZR2 4599 aa6.86□□□□□ -1.31
CUX1-202ENST00000292538 LINC00483Q53H64 154 aa6.86□□□□□ -1.31
CUX1-202ENST00000292538 LINC00472Q9H8W2 130 aa6.86□□□□□ -1.31
CUX1-202ENST00000292538 FAT2Q9NYQ8 4349 aa6.85□□□□□ -1.31
CUX1-202ENST00000292538 CASC2Q6XLA1 102 aa6.85□□□□□ -1.31
CUX1-202ENST00000292538 IGHV6-1A0A0B4J1U7 121 aa6.84□□□□□ -1.31
CUX1-202ENST00000292538 H7BZZ5 65 aa6.84□□□□□ -1.31
CUX1-202ENST00000292538 SMR3BP02814 79 aaPredicted RBP6.84□□□□□ -1.31
CUX1-202ENST00000292538 PRR15Q8IV56 129 aa6.84□□□□□ -1.31
CUX1-202ENST00000292538 A8MWP4 228 aa6.83□□□□□ -1.32
CUX1-202ENST00000292538 NDUFB1O75438 58 aa6.83□□□□□ -1.32
CUX1-202ENST00000292538 CDK2AP2O75956 126 aa6.83□□□□□ -1.32
CUX1-202ENST00000292538 A0A0U1RQV1 116 aa6.83□□□□□ -1.32
CUX1-202ENST00000292538 KLKP1Q107X0 134 aa6.82□□□□□ -1.32
CUX1-202ENST00000292538 ALMS1Q8TCU4 4167 aa6.82□□□□□ -1.32
CUX1-202ENST00000292538 A0A0A0MQY5 61 aa6.82□□□□□ -1.32
CUX1-202ENST00000292538 NDUFS5O43920 106 aa6.81□□□□□ -1.32
CUX1-202ENST00000292538 A0A087X002 238 aa6.81□□□□□ -1.32
CUX1-202ENST00000292538 PKD1P98161 4303 aa6.81□□□□□ -1.32
CUX1-202ENST00000292538 PMAIP1Q13794 54 aa6.8□□□□□ -1.32
CUX1-202ENST00000292538 PRR4Q16378 134 aa6.8□□□□□ -1.32
CUX1-202ENST00000292538 VPS13BQ7Z7G8 4022 aa6.8□□□□□ -1.32
CUX1-202ENST00000292538 SACSQ9NZJ4 4579 aa6.79□□□□□ -1.32
CUX1-202ENST00000292538 Q6ZSA8 131 aa6.78□□□□□ -1.32
CUX1-202ENST00000292538 Q96NJ1 140 aa6.78□□□□□ -1.32
CUX1-202ENST00000292538 hDV103S1A0JD37 113 aa6.77□□□□□ -1.33
CUX1-202ENST00000292538 LINC00208Q96KT6 92 aa6.77□□□□□ -1.33
CUX1-202ENST00000292538 NOTCH2NLQ7Z3S9 236 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 164.8 ms