RNA–Protein interactions for RNA: ENST00000284770.9

PDLIM3-202, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best) BASIC

Gene PDLIM3, Length 1,766 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-202ENST00000284770 ZNF706Q9Y5V0 76 aaPredicted RBP11.41□□□□□ -0.58
PDLIM3-202ENST00000284770 NDUFV3P56181 108 aaKnown RBP11.4□□□□□ -0.58
PDLIM3-202ENST00000284770 SPRR4Q96PI1 79 aa11.4□□□□□ -0.58
PDLIM3-202ENST00000284770 A0A1B0GV72 72 aa11.39□□□□□ -0.59
PDLIM3-202ENST00000284770 GAGE2AQ6NT46 116 aa11.39□□□□□ -0.59
PDLIM3-202ENST00000284770 K7ERU9 68 aa11.39□□□□□ -0.59
PDLIM3-202ENST00000284770 Q8N1X5 172 aa11.39□□□□□ -0.59
PDLIM3-202ENST00000284770 SPRR1BP22528 89 aa11.38□□□□□ -0.59
PDLIM3-202ENST00000284770 KRTAP17-1Q9BYP8 105 aa11.38□□□□□ -0.59
PDLIM3-202ENST00000284770 C14orf132Q9NPU4 83 aa11.38□□□□□ -0.59
PDLIM3-202ENST00000284770 SMIM29Q86T20 159 aa11.36□□□□□ -0.59
PDLIM3-202ENST00000284770 C3orf22Q8N5N4 141 aa11.36□□□□□ -0.59
PDLIM3-202ENST00000284770 J3QR89 54 aa11.36□□□□□ -0.59
PDLIM3-202ENST00000284770 LINC00483Q53H64 154 aa11.36□□□□□ -0.59
PDLIM3-202ENST00000284770 RBM3P98179 157 aaKnown RBP11.35□□□□□ -0.59
PDLIM3-202ENST00000284770 ANAPC11Q9NYG5 84 aa11.31□□□□□ -0.6
PDLIM3-202ENST00000284770 LOC110117498A0A087WWA1 95 aa11.3□□□□□ -0.6
PDLIM3-202ENST00000284770 TRBV7-4A0A0J9YYF1 115 aa11.3□□□□□ -0.6
PDLIM3-202ENST00000284770 KRTAP1-4P0C5Y4 121 aa11.28□□□□□ -0.6
PDLIM3-202ENST00000284770 Q6ZQT0 140 aa11.28□□□□□ -0.6
PDLIM3-202ENST00000284770 DSCR8Q96T75 97 aa11.28□□□□□ -0.6
PDLIM3-202ENST00000284770 BIRC6Q9NR09 4857 aa11.27□□□□□ -0.6
PDLIM3-202ENST00000284770 CCKP06307 115 aa11.26□□□□□ -0.61
PDLIM3-202ENST00000284770 FAM240AA0A1B0GVK7 77 aa11.26□□□□□ -0.61
PDLIM3-202ENST00000284770 F8WEM9 126 aa11.25□□□□□ -0.61
PDLIM3-202ENST00000284770 PDE6GP18545 87 aa11.25□□□□□ -0.61
PDLIM3-202ENST00000284770 FAM229BQ4G0N7 80 aa11.25□□□□□ -0.61
PDLIM3-202ENST00000284770 IGLV8-61A0A075B6I0 122 aa11.24□□□□□ -0.61
PDLIM3-202ENST00000284770 IGLV9-49A0A0B4J1Y8 123 aa11.22□□□□□ -0.61
PDLIM3-202ENST00000284770 A0A087X002 238 aa11.21□□□□□ -0.61
PDLIM3-202ENST00000284770 ACYP1P07311 99 aa11.2□□□□□ -0.62
PDLIM3-202ENST00000284770 CRYGAP11844 174 aa11.2□□□□□ -0.62
PDLIM3-202ENST00000284770 C9orf153Q5TBE3 101 aa11.18□□□□□ -0.62
PDLIM3-202ENST00000284770 CDIP1Q9H305 208 aa11.18□□□□□ -0.62
PDLIM3-202ENST00000284770 MOBPQ13875 183 aa11.17□□□□□ -0.62
PDLIM3-202ENST00000284770 C21orf62-AS1Q17RA5 79 aa11.17□□□□□ -0.62
PDLIM3-202ENST00000284770 KRTAP13-2Q52LG2 175 aa11.17□□□□□ -0.62
PDLIM3-202ENST00000284770 IGFL1Q6UW32 110 aa11.17□□□□□ -0.62
PDLIM3-202ENST00000284770 PKHD1L1Q86WI1 4243 aa11.17□□□□□ -0.62
PDLIM3-202ENST00000284770 Q8NBF4 154 aa11.16□□□□□ -0.62
PDLIM3-202ENST00000284770 KRTAP4-5Q9BYR2 181 aa11.16□□□□□ -0.62
PDLIM3-202ENST00000284770 A0A0G2JQZ4 141 aa11.15□□□□□ -0.62
PDLIM3-202ENST00000284770 A0A1W2PNM2 257 aa11.15□□□□□ -0.62
PDLIM3-202ENST00000284770 Q6JHZ5 121 aa11.15□□□□□ -0.62
PDLIM3-202ENST00000284770 VPS25Q9BRG1 176 aa11.15□□□□□ -0.62
PDLIM3-202ENST00000284770 LINC00846Q9NV44 126 aa11.14□□□□□ -0.63
PDLIM3-202ENST00000284770 PRR26Q8N8Z3 221 aa11.13□□□□□ -0.63
PDLIM3-202ENST00000284770 SSBP3-AS1Q7Z2R9 100 aa11.13□□□□□ -0.63
PDLIM3-202ENST00000284770 TYMSOSQ8TAI1 123 aa11.1□□□□□ -0.63
PDLIM3-202ENST00000284770 HERC2O95714 4834 aa11.08□□□□□ -0.64
PDLIM3-202ENST00000284770 A0A1B0GW54 56 aa11.07□□□□□ -0.64
PDLIM3-202ENST00000284770 Q6Q795 121 aa11.05□□□□□ -0.64
PDLIM3-202ENST00000284770 UBL5Q9BZL1 73 aa11.02□□□□□ -0.65
PDLIM3-202ENST00000284770 FLG2Q5D862 2391 aaPredicted RBP11.01□□□□□ -0.65
PDLIM3-202ENST00000284770 KRTAP10-8P60410 259 aa11.01□□□□□ -0.65
PDLIM3-202ENST00000284770 LINC00643Q86TS7 51 aa11.01□□□□□ -0.65
PDLIM3-202ENST00000284770 Q6ZVQ6 151 aa11□□□□□ -0.65
PDLIM3-202ENST00000284770 LRP1Q07954 4544 aaKnown RBP11□□□□□ -0.65
PDLIM3-202ENST00000284770 CD164Q04900 197 aa11□□□□□ -0.65
PDLIM3-202ENST00000284770 HRCT1Q6UXD1 115 aa11□□□□□ -0.65
PDLIM3-202ENST00000284770 OXTP01178 125 aa10.99□□□□□ -0.65
PDLIM3-202ENST00000284770 MT-ATP8P03928 68 aa10.98□□□□□ -0.65
PDLIM3-202ENST00000284770 TRBV7-7A0A0K0K1E9 115 aa10.98□□□□□ -0.65
PDLIM3-202ENST00000284770 A0A087WSZ3 146 aa10.97□□□□□ -0.65
PDLIM3-202ENST00000284770 LINC00304Q8N9R0 145 aa10.97□□□□□ -0.65
PDLIM3-202ENST00000284770 C4orf48Q5BLP8 95 aa10.96□□□□□ -0.65
PDLIM3-202ENST00000284770 SIGMAR1Q99720 223 aa10.96□□□□□ -0.65
PDLIM3-202ENST00000284770 FAT3Q8TDW7 4589 aa10.95□□□□□ -0.66
PDLIM3-202ENST00000284770 NREPQ16612 68 aa10.95□□□□□ -0.66
PDLIM3-202ENST00000284770 MYCBP2O75592 4640 aa10.94□□□□□ -0.66
PDLIM3-202ENST00000284770 SPAG11AQ6PDA7 123 aa10.94□□□□□ -0.66
PDLIM3-202ENST00000284770 SPINK1P00995 79 aa10.93□□□□□ -0.66
PDLIM3-202ENST00000284770 MT1HL1P0DM35 61 aa10.93□□□□□ -0.66
PDLIM3-202ENST00000284770 KRTAP29-1A8MX34 341 aaPredicted RBP10.92□□□□□ -0.66
PDLIM3-202ENST00000284770 ABCA13Q86UQ4 5058 aa10.9□□□□□ -0.66
PDLIM3-202ENST00000284770 TNXBP22105 4242 aa10.9□□□□□ -0.66
PDLIM3-202ENST00000284770 ATP5EP2Q5VTU8 51 aa10.9□□□□□ -0.67
PDLIM3-202ENST00000284770 IGKV3D-7A0A0C4DH55 119 aa10.89□□□□□ -0.67
PDLIM3-202ENST00000284770 RPS29P62273 56 aaKnown RBP10.88□□□□□ -0.67
PDLIM3-202ENST00000284770 SS18L2Q9UHA2 77 aa10.87□□□□□ -0.67
PDLIM3-202ENST00000284770 CXCL6P80162 114 aa10.86□□□□□ -0.67
PDLIM3-202ENST00000284770 Q5XG85 94 aa10.86□□□□□ -0.67
PDLIM3-202ENST00000284770 LIMD2Q9BT23 127 aa10.85□□□□□ -0.67
PDLIM3-202ENST00000284770 LINC00472Q9H8W2 130 aa10.84□□□□□ -0.67
PDLIM3-202ENST00000284770 BPY2O14599 106 aa10.83□□□□□ -0.68
PDLIM3-202ENST00000284770 IMUPQ9GZP8 106 aa10.82□□□□□ -0.68
PDLIM3-202ENST00000284770 Q96NJ1 140 aa10.81□□□□□ -0.68
PDLIM3-202ENST00000284770 ASB16-AS1Q495Z4 193 aa10.8□□□□□ -0.68
PDLIM3-202ENST00000284770 DEFB116Q30KQ4 102 aa10.8□□□□□ -0.68
PDLIM3-202ENST00000284770 DSCR10P59022 87 aa10.78□□□□□ -0.68
PDLIM3-202ENST00000284770 J3QL48 77 aa10.77□□□□□ -0.68
PDLIM3-202ENST00000284770 HIST1H4AP62805 103 aaKnown RBP10.75□□□□□ -0.69
PDLIM3-202ENST00000284770 Q8N9L7 120 aa10.75□□□□□ -0.69
PDLIM3-202ENST00000284770 DMBT1Q9UGM3 2413 aaPredicted RBP10.74□□□□□ -0.69
PDLIM3-202ENST00000284770 A0A087WVE0 104 aa10.73□□□□□ -0.69
PDLIM3-202ENST00000284770 IGKV4-1P06312 121 aa10.73□□□□□ -0.69
PDLIM3-202ENST00000284770 C1orf195Q5TG92 126 aa10.73□□□□□ -0.69
PDLIM3-202ENST00000284770 J3KT08 172 aa10.72□□□□□ -0.69
PDLIM3-202ENST00000284770 K7EQZ3 153 aa10.7□□□□□ -0.7
PDLIM3-202ENST00000284770 A8MWP4 228 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms