RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 TRBV7-7A0A0K0K1E9 115 aa7.25□□□□□ -1.25
VPS4A-201ENST00000254950 IGFL1Q6UW32 110 aa7.24□□□□□ -1.25
VPS4A-201ENST00000254950 TYMSOSQ8TAI1 123 aa7.23□□□□□ -1.25
VPS4A-201ENST00000254950 IGLV5-48A0A075B6I7 105 aa7.23□□□□□ -1.25
VPS4A-201ENST00000254950 UQCRQO14949 82 aa7.22□□□□□ -1.25
VPS4A-201ENST00000254950 KRTAP10-2P60368 255 aa7.22□□□□□ -1.25
VPS4A-201ENST00000254950 SERP2Q8N6R1 65 aa7.22□□□□□ -1.25
VPS4A-201ENST00000254950 C20orf197Q8N268 126 aa7.21□□□□□ -1.25
VPS4A-201ENST00000254950 SSBP3-AS1Q7Z2R9 100 aa7.21□□□□□ -1.26
VPS4A-201ENST00000254950 TRRAPQ9Y4A5 3859 aa7.21□□□□□ -1.26
VPS4A-201ENST00000254950 IGHV6-1A0A0B4J1U7 121 aa7.21□□□□□ -1.26
VPS4A-201ENST00000254950 Q8N9L7 120 aa7.21□□□□□ -1.26
VPS4A-201ENST00000254950 OBSCN-AS1Q96MR7 158 aa7.21□□□□□ -1.26
VPS4A-201ENST00000254950 ANAPC11Q9NYG5 84 aa7.2□□□□□ -1.26
VPS4A-201ENST00000254950 TENM2Q9NT68 2774 aa7.19□□□□□ -1.26
VPS4A-201ENST00000254950 AKAP9Q99996 3911 aa7.19□□□□□ -1.26
VPS4A-201ENST00000254950 PANO1I0J062 215 aa7.19□□□□□ -1.26
VPS4A-201ENST00000254950 CASC2Q6XLA1 102 aa7.19□□□□□ -1.26
VPS4A-201ENST00000254950 KRTAP10-1P60331 282 aa7.18□□□□□ -1.26
VPS4A-201ENST00000254950 A0A0G2JQZ4 141 aa7.17□□□□□ -1.26
VPS4A-201ENST00000254950 A0A1W2PNM2 257 aa7.17□□□□□ -1.26
VPS4A-201ENST00000254950 TRAV7A0A075B6U4 112 aa7.16□□□□□ -1.26
VPS4A-201ENST00000254950 COX7CP15954 63 aa7.16□□□□□ -1.26
VPS4A-201ENST00000254950 HCG22E2RYF7 251 aa7.16□□□□□ -1.26
VPS4A-201ENST00000254950 FAM30AQ9NZY2 134 aa7.15□□□□□ -1.26
VPS4A-201ENST00000254950 KRTAP4-16G5E9R7 235 aaPredicted RBP7.14□□□□□ -1.27
VPS4A-201ENST00000254950 CSMD3Q7Z407 3707 aa7.12□□□□□ -1.27
VPS4A-201ENST00000254950 SPRR1BP22528 89 aa7.12□□□□□ -1.27
VPS4A-201ENST00000254950 KRTAP7-1Q8IUC3 87 aa7.11□□□□□ -1.27
VPS4A-201ENST00000254950 SPAG11AQ6PDA7 123 aa7.09□□□□□ -1.27
VPS4A-201ENST00000254950 LINC00304Q8N9R0 145 aa7.09□□□□□ -1.27
VPS4A-201ENST00000254950 SNURFQ9Y675 71 aa7.09□□□□□ -1.27
VPS4A-201ENST00000254950 A8MWP4 228 aa7.08□□□□□ -1.28
VPS4A-201ENST00000254950 SMIM29Q86T20 159 aa7.08□□□□□ -1.28
VPS4A-201ENST00000254950 hDV103S1A0JD37 113 aa7.08□□□□□ -1.28
VPS4A-201ENST00000254950 NDUFC1O43677 76 aa7.07□□□□□ -1.28
VPS4A-201ENST00000254950 FAM229BQ4G0N7 80 aa7.07□□□□□ -1.28
VPS4A-201ENST00000254950 K7EQZ3 153 aa7.07□□□□□ -1.28
VPS4A-201ENST00000254950 LINC00208Q96KT6 92 aa7.06□□□□□ -1.28
VPS4A-201ENST00000254950 IGLV8-61A0A075B6I0 122 aa7.05□□□□□ -1.28
VPS4A-201ENST00000254950 KRTAP11-1Q8IUC1 163 aa7.04□□□□□ -1.28
VPS4A-201ENST00000254950 C5orf47Q569G3 176 aa7.03□□□□□ -1.28
VPS4A-201ENST00000254950 PRR15Q8IV56 129 aa7.03□□□□□ -1.28
VPS4A-201ENST00000254950 CD164Q04900 197 aa7.03□□□□□ -1.28
VPS4A-201ENST00000254950 TGP01266 2768 aa7.03□□□□□ -1.28
VPS4A-201ENST00000254950 LINC00313P59037 77 aa7.02□□□□□ -1.29
VPS4A-201ENST00000254950 H0Y9P7 68 aa7.02□□□□□ -1.29
VPS4A-201ENST00000254950 TMEM254Q8TBM7 123 aa7.02□□□□□ -1.29
VPS4A-201ENST00000254950 C8orf87E5RJ46 101 aa7.02□□□□□ -1.29
VPS4A-201ENST00000254950 TP53AIP1Q9HCN2 124 aa7.02□□□□□ -1.29
VPS4A-201ENST00000254950 SPINK1P00995 79 aa7.01□□□□□ -1.29
VPS4A-201ENST00000254950 FAM236DA0A1B0GTK5 79 aa7.01□□□□□ -1.29
VPS4A-201ENST00000254950 FAM236CP0DP71 79 aa7.01□□□□□ -1.29
VPS4A-201ENST00000254950 SRRM2Q9UQ35 2752 aaKnown RBP7.01□□□□□ -1.29
VPS4A-201ENST00000254950 PRR26Q8N8Z3 221 aa7□□□□□ -1.29
VPS4A-201ENST00000254950 A0A1B0GVX0 72 aa6.99□□□□□ -1.29
VPS4A-201ENST00000254950 TMEM258P61165 79 aa6.99□□□□□ -1.29
VPS4A-201ENST00000254950 PRR4Q16378 134 aa6.99□□□□□ -1.29
VPS4A-201ENST00000254950 LINC00483Q53H64 154 aa6.98□□□□□ -1.29
VPS4A-201ENST00000254950 C8orf17Q9NRJ1 99 aa6.98□□□□□ -1.29
VPS4A-201ENST00000254950 CHKB-CPT1BH3BT56 60 aa6.98□□□□□ -1.29
VPS4A-201ENST00000254950 COL7A1Q02388 2944 aa6.98□□□□□ -1.29
VPS4A-201ENST00000254950 RETNLBQ9BQ08 111 aa6.98□□□□□ -1.29
VPS4A-201ENST00000254950 MRPL34Q9BQ48 92 aaKnown RBP6.97□□□□□ -1.29
VPS4A-201ENST00000254950 CYSTM1Q9H1C7 97 aa6.97□□□□□ -1.29
VPS4A-201ENST00000254950 ATP5EP56381 51 aaPredicted RBP6.96□□□□□ -1.29
VPS4A-201ENST00000254950 C1orf64Q8NEQ6 169 aa6.95□□□□□ -1.3
VPS4A-201ENST00000254950 J3QL48 77 aa6.95□□□□□ -1.3
VPS4A-201ENST00000254950 KRTAP13-1Q8IUC0 172 aa6.95□□□□□ -1.3
VPS4A-201ENST00000254950 FBN3Q75N90 2809 aa6.94□□□□□ -1.3
VPS4A-201ENST00000254950 TRAV22A0A0B4J277 110 aa6.94□□□□□ -1.3
VPS4A-201ENST00000254950 DSCR10P59022 87 aa6.94□□□□□ -1.3
VPS4A-201ENST00000254950 Q96NJ1 140 aa6.94□□□□□ -1.3
VPS4A-201ENST00000254950 Q5VSD8 79 aa6.93□□□□□ -1.3
VPS4A-201ENST00000254950 PCOTHQ58A44 107 aa6.92□□□□□ -1.3
VPS4A-201ENST00000254950 Q6ZSA8 131 aa6.92□□□□□ -1.3
VPS4A-201ENST00000254950 H3BPC8 53 aa6.91□□□□□ -1.3
VPS4A-201ENST00000254950 MPLKIPQ8TAP9 179 aa6.9□□□□□ -1.31
VPS4A-201ENST00000254950 IGKV2D-30A0A075B6S6 120 aa6.89□□□□□ -1.31
VPS4A-201ENST00000254950 IGKV2-30P06310 120 aa6.89□□□□□ -1.31
VPS4A-201ENST00000254950 LINC00472Q9H8W2 130 aa6.89□□□□□ -1.31
VPS4A-201ENST00000254950 A0A087X002 238 aa6.86□□□□□ -1.31
VPS4A-201ENST00000254950 DMBT1Q9UGM3 2413 aaPredicted RBP6.85□□□□□ -1.31
VPS4A-201ENST00000254950 C9orf92A6NGG3 77 aa6.84□□□□□ -1.31
VPS4A-201ENST00000254950 C4orf26Q17RF5 130 aa6.84□□□□□ -1.31
VPS4A-201ENST00000254950 A0A0U1RQV1 116 aa6.83□□□□□ -1.32
VPS4A-201ENST00000254950 LOC101927531A0A1B0GV80 90 aa6.83□□□□□ -1.32
VPS4A-201ENST00000254950 ATP11AUNQ6ZP68 121 aa6.81□□□□□ -1.32
VPS4A-201ENST00000254950 MMP24-AS1A0A0U1RRL7 71 aa6.8□□□□□ -1.32
VPS4A-201ENST00000254950 C1orf195Q5TG92 126 aa6.8□□□□□ -1.32
VPS4A-201ENST00000254950 OCR1Q9BZK8 76 aa6.8□□□□□ -1.32
VPS4A-201ENST00000254950 SERP1Q9Y6X1 66 aa6.79□□□□□ -1.32
VPS4A-201ENST00000254950 KLKP1Q107X0 134 aa6.79□□□□□ -1.32
VPS4A-201ENST00000254950 FLG2Q5D862 2391 aaPredicted RBP6.78□□□□□ -1.32
VPS4A-201ENST00000254950 MEGF8Q7Z7M0 2845 aa6.77□□□□□ -1.33
VPS4A-201ENST00000254950 KRTAP13-2Q52LG2 175 aa6.77□□□□□ -1.33
VPS4A-201ENST00000254950 IGLV7-46A0A075B6I9 117 aa6.76□□□□□ -1.33
VPS4A-201ENST00000254950 SEC61GP60059 68 aa6.75□□□□□ -1.33
VPS4A-201ENST00000254950 HUWE1Q7Z6Z7 4374 aaKnown RBP6.74□□□□□ -1.33
VPS4A-201ENST00000254950 BRK1Q8WUW1 75 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms