RNA–Protein interactions for RNA: ENST00000642072.1

LINC00339-212, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 338 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-212ENST00000642072 H3BRM9 83 aa4.73□□□□□ -1.65
LINC00339-212ENST00000642072 ZNF22P17026 224 aaPredicted RBP4.73□□□□□ -1.65
LINC00339-212ENST00000642072 ZNF625Q96I27 306 aaPredicted RBP4.73□□□□□ -1.65
LINC00339-212ENST00000642072 MAP1LC3CQ9BXW4 147 aa4.73□□□□□ -1.65
LINC00339-212ENST00000642072 FLGP20930 4061 aaPredicted RBP4.72□□□□□ -1.65
LINC00339-212ENST00000642072 LINC01549A6NIU2 74 aa4.72□□□□□ -1.65
LINC00339-212ENST00000642072 CFC1BP0CG36 223 aa4.72□□□□□ -1.65
LINC00339-212ENST00000642072 LINC01545Q5VT33 79 aa4.72□□□□□ -1.65
LINC00339-212ENST00000642072 SMCR5Q8TEV8 140 aa4.72□□□□□ -1.65
LINC00339-212ENST00000642072 PMCHL2Q9BQD1 86 aa4.72□□□□□ -1.65
LINC00339-212ENST00000642072 DLEU1O43261 78 aa4.71□□□□□ -1.66
LINC00339-212ENST00000642072 KRTAP10-6P60371 365 aaPredicted RBP4.71□□□□□ -1.66
LINC00339-212ENST00000642072 FA2HQ7L5A8 372 aa4.71□□□□□ -1.66
LINC00339-212ENST00000642072 KCNQ1DNQ9H478 68 aa4.71□□□□□ -1.66
LINC00339-212ENST00000642072 NDUFA12Q9UI09 145 aa4.71□□□□□ -1.66
LINC00339-212ENST00000642072 SSPOA2VEC9 5147 aa4.7□□□□□ -1.66
LINC00339-212ENST00000642072 A0A096LNJ9 63 aa4.7□□□□□ -1.66
LINC00339-212ENST00000642072 HSBP1L1C9JCN9 74 aa4.7□□□□□ -1.66
LINC00339-212ENST00000642072 PRYO14603 147 aa4.7□□□□□ -1.66
LINC00339-212ENST00000642072 SLC25A20O43772 301 aa4.7□□□□□ -1.66
LINC00339-212ENST00000642072 HBDP02042 147 aa4.69□□□□□ -1.66
LINC00339-212ENST00000642072 MOBPQ13875 183 aa4.69□□□□□ -1.66
LINC00339-212ENST00000642072 USH2AO75445 5202 aa4.68□□□□□ -1.66
LINC00339-212ENST00000642072 C11orf86A6NJI1 115 aa4.68□□□□□ -1.66
LINC00339-212ENST00000642072 ERC2-IT1O76042 136 aa4.68□□□□□ -1.66
LINC00339-212ENST00000642072 COX8AP10176 69 aa4.68□□□□□ -1.66
LINC00339-212ENST00000642072 SLC25A34Q6PIV7 304 aa4.68□□□□□ -1.66
LINC00339-212ENST00000642072 SFTA2Q6UW10 78 aa4.68□□□□□ -1.66
LINC00339-212ENST00000642072 SSBP3-AS1Q7Z2R9 100 aa4.68□□□□□ -1.66
LINC00339-212ENST00000642072 ATOH7Q8N100 152 aa4.68□□□□□ -1.66
LINC00339-212ENST00000642072 IGLV9-49A0A0B4J1Y8 123 aa4.67□□□□□ -1.66
LINC00339-212ENST00000642072 PCOTHQ58A44 107 aa4.67□□□□□ -1.66
LINC00339-212ENST00000642072 GAGE2AQ6NT46 116 aa4.67□□□□□ -1.66
LINC00339-212ENST00000642072 TRBV10-3A0A0K0K1G6 114 aa4.66□□□□□ -1.66
LINC00339-212ENST00000642072 B5MCH6 92 aa4.66□□□□□ -1.66
LINC00339-212ENST00000642072 LINC00158P58513 81 aa4.66□□□□□ -1.66
LINC00339-212ENST00000642072 IFI27L1Q96BM0 104 aa4.66□□□□□ -1.66
LINC00339-212ENST00000642072 Q9BRP9 147 aa4.66□□□□□ -1.66
LINC00339-212ENST00000642072 IGLV8-61A0A075B6I0 122 aa4.65□□□□□ -1.67
LINC00339-212ENST00000642072 A0A0U1RRA0 63 aa4.65□□□□□ -1.67
LINC00339-212ENST00000642072 ETDCA0A1B0GVM5 59 aa4.65□□□□□ -1.67
LINC00339-212ENST00000642072 NCR3O14931 201 aa4.65□□□□□ -1.67
LINC00339-212ENST00000642072 BATFQ16520 125 aa4.65□□□□□ -1.67
LINC00339-212ENST00000642072 BVES-AS1Q5T3Y7 98 aa4.65□□□□□ -1.67
LINC00339-212ENST00000642072 BOD1L2Q8IYS8 172 aa4.65□□□□□ -1.67
LINC00339-212ENST00000642072 SMIM13P0DJ93 91 aa4.64□□□□□ -1.67
LINC00339-212ENST00000642072 HINT1P49773 126 aaPredicted RBP4.64□□□□□ -1.67
LINC00339-212ENST00000642072 TMEM170BQ5T4T1 132 aa4.64□□□□□ -1.67
LINC00339-212ENST00000642072 TMEM223A0PJW6 202 aa4.63□□□□□ -1.67
LINC00339-212ENST00000642072 UBE2V1Q13404 147 aa4.63□□□□□ -1.67
LINC00339-212ENST00000642072 Q6ZRX8 168 aa4.63□□□□□ -1.67
LINC00339-212ENST00000642072 C2orf91Q6ZV80 131 aa4.63□□□□□ -1.67
LINC00339-212ENST00000642072 MIR7-3HGQ8N6C7 128 aa4.63□□□□□ -1.67
LINC00339-212ENST00000642072 HIGD1BQ9P298 99 aa4.63□□□□□ -1.67
LINC00339-212ENST00000642072 TRAV12-1A0A0B4J245 112 aa4.62□□□□□ -1.67
LINC00339-212ENST00000642072 KRTAP9-7A8MTY7 169 aa4.62□□□□□ -1.67
LINC00339-212ENST00000642072 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.62□□□□□ -1.67
LINC00339-212ENST00000642072 TAX1BP3O14907 124 aa4.62□□□□□ -1.67
LINC00339-212ENST00000642072 HSD52Q0P140 79 aa4.62□□□□□ -1.67
LINC00339-212ENST00000642072 ANKRD39Q53RE8 183 aa4.62□□□□□ -1.67
LINC00339-212ENST00000642072 LOC107984156A0A0G2JMH3 177 aa4.61□□□□□ -1.67
LINC00339-212ENST00000642072 ARL17AQ8IVW1 177 aa4.61□□□□□ -1.67
LINC00339-212ENST00000642072 A6NDN8 102 aa4.6□□□□□ -1.67
LINC00339-212ENST00000642072 H0Y8G0 127 aa4.6□□□□□ -1.67
LINC00339-212ENST00000642072 DPM2O94777 84 aa4.6□□□□□ -1.67
LINC00339-212ENST00000642072 IGKCP01834 107 aa4.6□□□□□ -1.67
LINC00339-212ENST00000642072 TRBV10-2A0A0K0K1G8 114 aa4.59□□□□□ -1.67
LINC00339-212ENST00000642072 C9orf92A6NGG3 77 aa4.59□□□□□ -1.67
LINC00339-212ENST00000642072 IGLV6-57P01721 117 aa4.59□□□□□ -1.67
LINC00339-212ENST00000642072 PLNP26678 52 aa4.59□□□□□ -1.67
LINC00339-212ENST00000642072 HERV-K104P63124 156 aa4.59□□□□□ -1.67
LINC00339-212ENST00000642072 TAL2Q16559 108 aa4.59□□□□□ -1.67
LINC00339-212ENST00000642072 MEIG1Q5JSS6 88 aa4.59□□□□□ -1.67
LINC00339-212ENST00000642072 C9orf153Q5TBE3 101 aa4.59□□□□□ -1.67
LINC00339-212ENST00000642072 ST20-AS1Q8NBB2 130 aa4.59□□□□□ -1.67
LINC00339-212ENST00000642072 CHTOPQ9Y3Y2 248 aaKnown RBP4.59□□□□□ -1.67
LINC00339-212ENST00000642072 FCGBPQ9Y6R7 5405 aaPredicted RBP4.58□□□□□ -1.68
LINC00339-212ENST00000642072 C9orf118A6NHY6 69 aa4.58□□□□□ -1.68
LINC00339-212ENST00000642072 M0R2T5 61 aa4.58□□□□□ -1.68
LINC00339-212ENST00000642072 VAMP3Q15836 100 aa4.57□□□□□ -1.68
LINC00339-212ENST00000642072 SPRR1BP22528 89 aa4.56□□□□□ -1.68
LINC00339-212ENST00000642072 NMUP48645 174 aa4.56□□□□□ -1.68
LINC00339-212ENST00000642072 TSPEAR-AS2P59090 65 aa4.56□□□□□ -1.68
LINC00339-212ENST00000642072 GTF2H5Q6ZYL4 71 aa4.56□□□□□ -1.68
LINC00339-212ENST00000642072 PCP2Q8IVA1 136 aa4.56□□□□□ -1.68
LINC00339-212ENST00000642072 LIMD2Q9BT23 127 aa4.56□□□□□ -1.68
LINC00339-212ENST00000642072 SPANXB1Q9NS25 103 aaPredicted RBP4.56□□□□□ -1.68
LINC00339-212ENST00000642072 CBY1Q9Y3M2 126 aa4.56□□□□□ -1.68
LINC00339-212ENST00000642072 SYNE2Q8WXH0 6885 aaKnown RBP4.56□□□□□ -1.68
LINC00339-212ENST00000642072 TRAV23DV6A0A075B6W5 121 aa4.55□□□□□ -1.68
LINC00339-212ENST00000642072 Q6ZVH6 145 aa4.55□□□□□ -1.68
LINC00339-212ENST00000642072 MYMXA0A1B0GTQ4 84 aa4.54□□□□□ -1.68
LINC00339-212ENST00000642072 A0A1B0GWB2 263 aa4.54□□□□□ -1.68
LINC00339-212ENST00000642072 E9PLD3 99 aa4.54□□□□□ -1.68
LINC00339-212ENST00000642072 K7EP34 96 aa4.54□□□□□ -1.68
LINC00339-212ENST00000642072 ZNF73O43830 326 aaPredicted RBP4.54□□□□□ -1.68
LINC00339-212ENST00000642072 EIF4EBP3O60516 100 aaPredicted RBP4.54□□□□□ -1.68
LINC00339-212ENST00000642072 NDUFC2O95298 119 aa4.54□□□□□ -1.68
LINC00339-212ENST00000642072 RPL37P61927 97 aaKnown RBP4.54□□□□□ -1.68
LINC00339-212ENST00000642072 CEND1Q8N111 149 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms