RNA–Protein interactions for RNA: ENST00000640501.1

PNKP-231, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 5

Gene PNKP, Length 151 nt, Biotype non stop decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-231	ENST00000640501	ATP5EP2	Q5VTU8	51 aa		5.39	□□□□□ -1.55
PNKP-231	ENST00000640501	UBL5	Q9BZL1	73 aa		5.39	□□□□□ -1.55
PNKP-231	ENST00000640501	SDIM1	Q6ZPB5	146 aa		5.38	□□□□□ -1.55
PNKP-231	ENST00000640501	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	5.38	□□□□□ -1.55
PNKP-231	ENST00000640501	STAB2	Q8WWQ8	2551 aa		5.38	□□□□□ -1.55
PNKP-231	ENST00000640501	NDUFV3	P56181	108 aa	Known RBP	5.37	□□□□□ -1.55
PNKP-231	ENST00000640501	REG3G	Q6UW15	175 aa		5.37	□□□□□ -1.55
PNKP-231	ENST00000640501		Q6ZRX8	168 aa		5.37	□□□□□ -1.55
PNKP-231	ENST00000640501	KRTAP1-5	Q9BYS1	174 aa		5.37	□□□□□ -1.55
PNKP-231	ENST00000640501	SPRR1A	P35321	89 aa		5.36	□□□□□ -1.55
PNKP-231	ENST00000640501		Q6JHZ5	121 aa		5.36	□□□□□ -1.55
PNKP-231	ENST00000640501	C9orf163	Q8N9P6	203 aa		5.36	□□□□□ -1.55
PNKP-231	ENST00000640501	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	5.35	□□□□□ -1.55
PNKP-231	ENST00000640501		A0A1B0GW54	56 aa		5.35	□□□□□ -1.55
PNKP-231	ENST00000640501	RPL37AP8	A6NKH3	93 aa		5.35	□□□□□ -1.55
PNKP-231	ENST00000640501		B5MCH6	92 aa		5.35	□□□□□ -1.55
PNKP-231	ENST00000640501	ANAPC13	Q9BS18	74 aa		5.35	□□□□□ -1.55
PNKP-231	ENST00000640501	HUWE1	Q7Z6Z7	4374 aa	Known RBP	5.34	□□□□□ -1.55
PNKP-231	ENST00000640501		A0A096LNI7	61 aa		5.34	□□□□□ -1.55
PNKP-231	ENST00000640501	IGKV2-24	A0A0C4DH68	120 aa		5.34	□□□□□ -1.55
PNKP-231	ENST00000640501	UBE2B	P63146	152 aa		5.34	□□□□□ -1.55
PNKP-231	ENST00000640501		Q6ZQT0	140 aa		5.34	□□□□□ -1.55
PNKP-231	ENST00000640501	COL7A1	Q02388	2944 aa		5.34	□□□□□ -1.56
PNKP-231	ENST00000640501	FAM168B	A1KXE4	195 aa		5.33	□□□□□ -1.56
PNKP-231	ENST00000640501		F8WEM9	126 aa		5.33	□□□□□ -1.56
PNKP-231	ENST00000640501	LINC00846	Q9NV44	126 aa		5.33	□□□□□ -1.56
PNKP-231	ENST00000640501	TRBV7-4	A0A0J9YYF1	115 aa		5.32	□□□□□ -1.56
PNKP-231	ENST00000640501	LRCOL1	A6NCL2	159 aa		5.32	□□□□□ -1.56
PNKP-231	ENST00000640501	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	5.32	□□□□□ -1.56
PNKP-231	ENST00000640501	SMCR5	Q8TEV8	140 aa		5.32	□□□□□ -1.56
PNKP-231	ENST00000640501	DPH3	Q96FX2	82 aa		5.32	□□□□□ -1.56
PNKP-231	ENST00000640501		H0Y9J4	135 aa		5.31	□□□□□ -1.56
PNKP-231	ENST00000640501	FUS	P35637	526 aa	Known RBP eCLIP	5.31	□□□□□ -1.56
PNKP-231	ENST00000640501	DEFB105A	Q8NG35	78 aa		5.31	□□□□□ -1.56
PNKP-231	ENST00000640501	IGLV5-48	A0A075B6I7	105 aa		5.3	□□□□□ -1.56
PNKP-231	ENST00000640501	C1orf134	Q5TEV5	83 aa		5.3	□□□□□ -1.56
PNKP-231	ENST00000640501		Q6ZRN7	208 aa	Predicted RBP	5.3	□□□□□ -1.56
PNKP-231	ENST00000640501	FAM19A1	Q7Z5A9	133 aa		5.3	□□□□□ -1.56
PNKP-231	ENST00000640501	WWC2-AS2	Q96NR7	200 aa		5.3	□□□□□ -1.56
PNKP-231	ENST00000640501		A0A087WTM6	91 aa		5.29	□□□□□ -1.56
PNKP-231	ENST00000640501		M0R2N4	97 aa		5.29	□□□□□ -1.56
PNKP-231	ENST00000640501	ATOX1	O00244	68 aa		5.29	□□□□□ -1.56
PNKP-231	ENST00000640501	FAM236A	A0A1B0GUQ0	79 aa		5.28	□□□□□ -1.56
PNKP-231	ENST00000640501	FAM236B	A0A1B0GV22	79 aa		5.28	□□□□□ -1.56
PNKP-231	ENST00000640501	CXCL6	P80162	114 aa		5.28	□□□□□ -1.56
PNKP-231	ENST00000640501		Q6ZR54	194 aa		5.28	□□□□□ -1.56
PNKP-231	ENST00000640501		Q9BRP9	147 aa		5.28	□□□□□ -1.56
PNKP-231	ENST00000640501		A0A1W2PNN7	141 aa		5.27	□□□□□ -1.57
PNKP-231	ENST00000640501	UBE2A	P49459	152 aa		5.27	□□□□□ -1.57
PNKP-231	ENST00000640501	HIST1H4A	P62805	103 aa	Known RBP	5.27	□□□□□ -1.57
PNKP-231	ENST00000640501	KRTAP7-1	Q8IUC3	87 aa		5.27	□□□□□ -1.57
PNKP-231	ENST00000640501		Q8N377	158 aa		5.27	□□□□□ -1.57
PNKP-231	ENST00000640501	DNAH9	Q9NYC9	4486 aa		5.27	□□□□□ -1.57
PNKP-231	ENST00000640501	IGKV3D-7	A0A0C4DH55	119 aa		5.26	□□□□□ -1.57
PNKP-231	ENST00000640501	C3orf84	H3BNL1	204 aa		5.26	□□□□□ -1.57
PNKP-231	ENST00000640501	RTL8C	O15255	209 aa		5.26	□□□□□ -1.57
PNKP-231	ENST00000640501	LY6G6C	O95867	125 aa		5.26	□□□□□ -1.57
PNKP-231	ENST00000640501	HAMP	P81172	84 aa		5.26	□□□□□ -1.57
PNKP-231	ENST00000640501	NREP	Q16612	68 aa		5.26	□□□□□ -1.57
PNKP-231	ENST00000640501		Q6ZVQ6	151 aa		5.26	□□□□□ -1.57
PNKP-231	ENST00000640501	MEGF8	Q7Z7M0	2845 aa		5.26	□□□□□ -1.57
PNKP-231	ENST00000640501	C1orf137	Q5JT78	98 aa		5.25	□□□□□ -1.57
PNKP-231	ENST00000640501	SPACA4	Q8TDM5	124 aa		5.25	□□□□□ -1.57
PNKP-231	ENST00000640501	HIGD2A	Q9BW72	106 aa		5.25	□□□□□ -1.57
PNKP-231	ENST00000640501	IGLV5-52	A0A0A0MRZ9	124 aa		5.24	□□□□□ -1.57
PNKP-231	ENST00000640501	BCE1	O60756	84 aa		5.24	□□□□□ -1.57
PNKP-231	ENST00000640501	CHTF8	P0CG12	524 aa		5.24	□□□□□ -1.57
PNKP-231	ENST00000640501	LINC01547	P58512	204 aa	Predicted RBP	5.24	□□□□□ -1.57
PNKP-231	ENST00000640501	PHF5A	Q7RTV0	110 aa	Known RBP	5.24	□□□□□ -1.57
PNKP-231	ENST00000640501	SMIM20	Q8N5G0	67 aa		5.24	□□□□□ -1.57
PNKP-231	ENST00000640501	ZNF706	Q9Y5V0	76 aa	Predicted RBP	5.24	□□□□□ -1.57
PNKP-231	ENST00000640501	DYNC2H1	Q8NCM8	4307 aa	Known RBP	5.24	□□□□□ -1.57
PNKP-231	ENST00000640501	PRLH	P81277	87 aa		5.23	□□□□□ -1.57
PNKP-231	ENST00000640501	LINC00476	Q8WZB0	136 aa		5.23	□□□□□ -1.57
PNKP-231	ENST00000640501	EPM2A	B3EWF7	344 aa		5.22	□□□□□ -1.57
PNKP-231	ENST00000640501	ST20-AS1	Q8NBB2	130 aa		5.22	□□□□□ -1.57
PNKP-231	ENST00000640501		Q8NBF4	154 aa		5.22	□□□□□ -1.57
PNKP-231	ENST00000640501	DNAH1	Q9P2D7	4330 aa		5.21	□□□□□ -1.58
PNKP-231	ENST00000640501	BPY2	O14599	106 aa		5.21	□□□□□ -1.58
PNKP-231	ENST00000640501	UQCRQ	O14949	82 aa		5.21	□□□□□ -1.58
PNKP-231	ENST00000640501	SPRR1B	P22528	89 aa		5.21	□□□□□ -1.58
PNKP-231	ENST00000640501	TNP2	Q05952	138 aa		5.21	□□□□□ -1.58
PNKP-231	ENST00000640501	TENM2	Q9NT68	2774 aa		5.21	□□□□□ -1.58
PNKP-231	ENST00000640501	IGLV8-61	A0A075B6I0	122 aa		5.2	□□□□□ -1.58
PNKP-231	ENST00000640501	ERC2-IT1	O76042	136 aa		5.2	□□□□□ -1.58
PNKP-231	ENST00000640501	SPRR4	Q96PI1	79 aa		5.2	□□□□□ -1.58
PNKP-231	ENST00000640501	COX7C	P15954	63 aa		5.19	□□□□□ -1.58
PNKP-231	ENST00000640501	RPL37A	P61513	92 aa	Known RBP	5.19	□□□□□ -1.58
PNKP-231	ENST00000640501	C3orf22	Q8N5N4	141 aa		5.19	□□□□□ -1.58
PNKP-231	ENST00000640501	SERP2	Q8N6R1	65 aa		5.19	□□□□□ -1.58
PNKP-231	ENST00000640501	PLAC8	Q9NZF1	115 aa		5.19	□□□□□ -1.58
PNKP-231	ENST00000640501	CRYGA	P11844	174 aa		5.18	□□□□□ -1.58
PNKP-231	ENST00000640501	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	5.18	□□□□□ -1.58
PNKP-231	ENST00000640501		A0A087WVE0	104 aa		5.17	□□□□□ -1.58
PNKP-231	ENST00000640501	C9orf153	Q5TBE3	101 aa		5.17	□□□□□ -1.58
PNKP-231	ENST00000640501	SMIM29	Q86T20	159 aa		5.17	□□□□□ -1.58
PNKP-231	ENST00000640501	CSMD3	Q7Z407	3707 aa		5.16	□□□□□ -1.58
PNKP-231	ENST00000640501		A0A1W2PNM2	257 aa		5.16	□□□□□ -1.58
PNKP-231	ENST00000640501	IGFL1	Q6UW32	110 aa		5.15	□□□□□ -1.59
PNKP-231	ENST00000640501	KRTAP13-1	Q8IUC0	172 aa		5.15	□□□□□ -1.59

Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms