RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 TSPEAR-AS2P59090 65 aa8.14□□□□□ -1.11
SYNE2-228ENST00000639659 NPC2P61916 151 aa8.13□□□□□ -1.11
SYNE2-228ENST00000639659 COX6B2Q6YFQ2 88 aa8.13□□□□□ -1.11
SYNE2-228ENST00000639659 ZNF73O43830 326 aaPredicted RBP8.11□□□□□ -1.11
SYNE2-228ENST00000639659 IGLV6-57P01721 117 aa8.11□□□□□ -1.11
SYNE2-228ENST00000639659 SLC7A5P1Q8MH63 180 aa8.11□□□□□ -1.11
SYNE2-228ENST00000639659 LEPROTO15243 131 aa8.1□□□□□ -1.11
SYNE2-228ENST00000639659 CHCHD1Q96BP2 118 aaKnown RBP8.09□□□□□ -1.11
SYNE2-228ENST00000639659 LOC107984156A0A0G2JMH3 177 aa8.08□□□□□ -1.12
SYNE2-228ENST00000639659 H7C2G1 150 aa8.08□□□□□ -1.12
SYNE2-228ENST00000639659 HINT1P49773 126 aaPredicted RBP8.08□□□□□ -1.12
SYNE2-228ENST00000639659 ARL17AQ8IVW1 177 aa8.08□□□□□ -1.12
SYNE2-228ENST00000639659 J3QQQ9 107 aa8.07□□□□□ -1.12
SYNE2-228ENST00000639659 HSBP1O75506 76 aa8.07□□□□□ -1.12
SYNE2-228ENST00000639659 LGALS3P17931 250 aaKnown RBP8.07□□□□□ -1.12
SYNE2-228ENST00000639659 NDUFC2O95298 119 aa8.06□□□□□ -1.12
SYNE2-228ENST00000639659 SLC25A34Q6PIV7 304 aa8.06□□□□□ -1.12
SYNE2-228ENST00000639659 LAMTOR3Q9UHA4 124 aa8.06□□□□□ -1.12
SYNE2-228ENST00000639659 S100A1P23297 94 aa8.05□□□□□ -1.12
SYNE2-228ENST00000639659 HERVK_113P61574 105 aa8.05□□□□□ -1.12
SYNE2-228ENST00000639659 OR13C6PQ8NH95 151 aa8.05□□□□□ -1.12
SYNE2-228ENST00000639659 Q1RN00 199 aa8.04□□□□□ -1.12
SYNE2-228ENST00000639659 SOSTDC1Q6X4U4 206 aa8.04□□□□□ -1.12
SYNE2-228ENST00000639659 EIF4EBP3O60516 100 aaPredicted RBP8.03□□□□□ -1.12
SYNE2-228ENST00000639659 DEFB105AQ8NG35 78 aa8.03□□□□□ -1.12
SYNE2-228ENST00000639659 PMCHL2Q9BQD1 86 aa8.03□□□□□ -1.12
SYNE2-228ENST00000639659 NMUP48645 174 aa8.02□□□□□ -1.13
SYNE2-228ENST00000639659 C5orf52A6NGY3 159 aa8.01□□□□□ -1.13
SYNE2-228ENST00000639659 SPRR1BP22528 89 aa8.01□□□□□ -1.13
SYNE2-228ENST00000639659 PLNP26678 52 aa8.01□□□□□ -1.13
SYNE2-228ENST00000639659 YPEL4Q96NS1 127 aa8.01□□□□□ -1.13
SYNE2-228ENST00000639659 CBY1Q9Y3M2 126 aa8.01□□□□□ -1.13
SYNE2-228ENST00000639659 LEPROTL1O95214 131 aa8□□□□□ -1.13
SYNE2-228ENST00000639659 TAL2Q16559 108 aa8□□□□□ -1.13
SYNE2-228ENST00000639659 ADAMTSL4-AS1Q5T5F5 129 aa8□□□□□ -1.13
SYNE2-228ENST00000639659 DHRS4-AS1Q9P1J3 65 aa8□□□□□ -1.13
SYNE2-228ENST00000639659 DPM2O94777 84 aa7.99□□□□□ -1.13
SYNE2-228ENST00000639659 RPL37P61927 97 aaKnown RBP7.99□□□□□ -1.13
SYNE2-228ENST00000639659 PRO1933Q9H354 126 aa7.99□□□□□ -1.13
SYNE2-228ENST00000639659 A0A0J9YXY3 114 aa7.98□□□□□ -1.13
SYNE2-228ENST00000639659 IGKCP01834 107 aa7.97□□□□□ -1.13
SYNE2-228ENST00000639659 FABP4P15090 132 aa7.97□□□□□ -1.13
SYNE2-228ENST00000639659 Q6Q795 121 aa7.97□□□□□ -1.13
SYNE2-228ENST00000639659 A0A0G2JQZ4 141 aa7.96□□□□□ -1.14
SYNE2-228ENST00000639659 COX7BP24311 80 aa7.96□□□□□ -1.14
SYNE2-228ENST00000639659 CD164Q04900 197 aa7.96□□□□□ -1.14
SYNE2-228ENST00000639659 C1orf195Q5TG92 126 aa7.96□□□□□ -1.14
SYNE2-228ENST00000639659 FLGP20930 4061 aaPredicted RBP7.95□□□□□ -1.14
SYNE2-228ENST00000639659 KRTAP9-7A8MTY7 169 aa7.94□□□□□ -1.14
SYNE2-228ENST00000639659 SERF1AO75920 110 aa7.94□□□□□ -1.14
SYNE2-228ENST00000639659 C6orf99Q4VX62 202 aa7.94□□□□□ -1.14
SYNE2-228ENST00000639659 SPANXCQ9NY87 97 aa7.94□□□□□ -1.14
SYNE2-228ENST00000639659 AKR1D1P51857 326 aa7.93□□□□□ -1.14
SYNE2-228ENST00000639659 LINC00308Q8TCZ7 52 aa7.93□□□□□ -1.14
SYNE2-228ENST00000639659 HSPB8Q9UJY1 196 aa7.93□□□□□ -1.14
SYNE2-228ENST00000639659 TEX49A0A1B0GTD5 131 aa7.92□□□□□ -1.14
SYNE2-228ENST00000639659 COLCA2A8K830 154 aa7.92□□□□□ -1.14
SYNE2-228ENST00000639659 TRGC2P03986 189 aa7.92□□□□□ -1.14
SYNE2-228ENST00000639659 ELOF1P60002 83 aaKnown RBP7.92□□□□□ -1.14
SYNE2-228ENST00000639659 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.91□□□□□ -1.14
SYNE2-228ENST00000639659 SPANXDQ9BXN6 97 aa7.91□□□□□ -1.14
SYNE2-228ENST00000639659 LINC00310P59036 64 aa7.9□□□□□ -1.14
SYNE2-228ENST00000639659 SMIM29Q86T20 159 aa7.9□□□□□ -1.14
SYNE2-228ENST00000639659 E9PLD3 99 aa7.89□□□□□ -1.15
SYNE2-228ENST00000639659 Q5XG85 94 aa7.88□□□□□ -1.15
SYNE2-228ENST00000639659 LITAFQ99732 161 aa7.87□□□□□ -1.15
SYNE2-228ENST00000639659 TCL1BO95988 128 aa7.85□□□□□ -1.15
SYNE2-228ENST00000639659 PCP2Q8IVA1 136 aa7.85□□□□□ -1.15
SYNE2-228ENST00000639659 ZNF815PA8K554 130 aa7.84□□□□□ -1.15
SYNE2-228ENST00000639659 TIMM17BO60830 172 aa7.83□□□□□ -1.16
SYNE2-228ENST00000639659 LINC00518Q8N0U6 118 aa7.83□□□□□ -1.16
SYNE2-228ENST00000639659 ATP11AUNQ6ZP68 121 aa7.82□□□□□ -1.16
SYNE2-228ENST00000639659 TTTY13Q9BZ97 58 aa7.82□□□□□ -1.16
SYNE2-228ENST00000639659 A0A1B0GWB2 263 aa7.81□□□□□ -1.16
SYNE2-228ENST00000639659 IGLV5-48A0A075B6I7 105 aa7.8□□□□□ -1.16
SYNE2-228ENST00000639659 A6NDN8 102 aa7.8□□□□□ -1.16
SYNE2-228ENST00000639659 OBSCN-AS1Q96MR7 158 aa7.8□□□□□ -1.16
SYNE2-228ENST00000639659 F8WEM9 126 aa7.79□□□□□ -1.16
SYNE2-228ENST00000639659 SSPOA2VEC9 5147 aa7.78□□□□□ -1.16
SYNE2-228ENST00000639659 TRBV7-6A0A0J9YX20 115 aa7.78□□□□□ -1.16
SYNE2-228ENST00000639659 CFC1P0CG37 223 aa7.78□□□□□ -1.16
SYNE2-228ENST00000639659 USH2AO75445 5202 aa7.77□□□□□ -1.16
SYNE2-228ENST00000639659 HIST1H2BKO60814 126 aa7.77□□□□□ -1.17
SYNE2-228ENST00000639659 HIST1H2BJP06899 126 aa7.77□□□□□ -1.17
SYNE2-228ENST00000639659 HIST1H2BOP23527 126 aa7.77□□□□□ -1.17
SYNE2-228ENST00000639659 HIST1H2BBP33778 126 aa7.77□□□□□ -1.17
SYNE2-228ENST00000639659 HIST1H2BDP58876 126 aa7.77□□□□□ -1.17
SYNE2-228ENST00000639659 HIST1H2BCP62807 126 aa7.77□□□□□ -1.17
SYNE2-228ENST00000639659 HIST2H2BEQ16778 126 aa7.77□□□□□ -1.17
SYNE2-228ENST00000639659 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.77□□□□□ -1.17
SYNE2-228ENST00000639659 HIST1H2BHQ93079 126 aa7.77□□□□□ -1.17
SYNE2-228ENST00000639659 HIST1H2BNQ99877 126 aa7.77□□□□□ -1.17
SYNE2-228ENST00000639659 HIST1H2BMQ99879 126 aa7.77□□□□□ -1.17
SYNE2-228ENST00000639659 SYS1-DBNDD2H3BUS1 97 aa7.76□□□□□ -1.17
SYNE2-228ENST00000639659 SCGB1D4Q6XE38 83 aa7.76□□□□□ -1.17
SYNE2-228ENST00000639659 NHP2Q9NX24 153 aaKnown RBP7.75□□□□□ -1.17
SYNE2-228ENST00000639659 Q75L30 129 aa7.73□□□□□ -1.17
SYNE2-228ENST00000639659 KRTAP9-8Q9BYQ0 159 aa7.72□□□□□ -1.17
SYNE2-228ENST00000639659 C20orf202A1L168 122 aa7.71□□□□□ -1.18
SYNE2-228ENST00000639659 A4D1N5 150 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms