RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 LINC00528Q8N1L1 170 aa3.77□□□□□ -1.81
SCN1A-216ENST00000637968 ACYP2P14621 99 aa3.77□□□□□ -1.81
SCN1A-216ENST00000637968 LAMA2P24043 3122 aaKnown RBP3.77□□□□□ -1.81
SCN1A-216ENST00000637968 IGLV1-40P01703 118 aa3.76□□□□□ -1.81
SCN1A-216ENST00000637968 A0A1W2PNM2 257 aa3.76□□□□□ -1.81
SCN1A-216ENST00000637968 IGLV5-48A0A075B6I7 105 aa3.75□□□□□ -1.81
SCN1A-216ENST00000637968 IGLV1-51P01701 117 aa3.75□□□□□ -1.81
SCN1A-216ENST00000637968 K7ERS5 55 aa3.75□□□□□ -1.81
SCN1A-216ENST00000637968 A8MWP4 228 aa3.75□□□□□ -1.81
SCN1A-216ENST00000637968 A0A096LNI7 61 aa3.75□□□□□ -1.81
SCN1A-216ENST00000637968 A0A1W2PPR1 153 aa3.75□□□□□ -1.81
SCN1A-216ENST00000637968 IGKV2-24A0A0C4DH68 120 aa3.74□□□□□ -1.81
SCN1A-216ENST00000637968 EGFEM1PQ0D2K5 195 aa3.74□□□□□ -1.81
SCN1A-216ENST00000637968 CNBPP62633 177 aaKnown RBP3.74□□□□□ -1.81
SCN1A-216ENST00000637968 Q8N377 158 aa3.74□□□□□ -1.81
SCN1A-216ENST00000637968 C7orf33Q8WU49 177 aa3.74□□□□□ -1.81
SCN1A-216ENST00000637968 SPINT4Q6UDR6 99 aa3.74□□□□□ -1.81
SCN1A-216ENST00000637968 C6orf48Q9UBA6 75 aa3.74□□□□□ -1.81
SCN1A-216ENST00000637968 XIRP2A4UGR9 3374 aa3.73□□□□□ -1.81
SCN1A-216ENST00000637968 RPL37AP61513 92 aaKnown RBP3.73□□□□□ -1.81
SCN1A-216ENST00000637968 ACANP16112 2415 aa3.73□□□□□ -1.81
SCN1A-216ENST00000637968 ROMO1P60602 79 aa3.73□□□□□ -1.81
SCN1A-216ENST00000637968 DEFB131BA0A096LNP1 70 aa3.72□□□□□ -1.81
SCN1A-216ENST00000637968 C10orf99Q6UWK7 81 aa3.72□□□□□ -1.81
SCN1A-216ENST00000637968 C9orf163Q8N9P6 203 aa3.72□□□□□ -1.81
SCN1A-216ENST00000637968 C14orf177Q52M58 125 aa3.72□□□□□ -1.81
SCN1A-216ENST00000637968 KRTAP16-1A8MUX0 517 aa3.72□□□□□ -1.81
SCN1A-216ENST00000637968 SPRR4Q96PI1 79 aa3.72□□□□□ -1.81
SCN1A-216ENST00000637968 HECTD1Q9ULT8 2610 aa3.71□□□□□ -1.81
SCN1A-216ENST00000637968 GVQW2A0A096LPI5 108 aaPredicted RBP3.71□□□□□ -1.81
SCN1A-216ENST00000637968 VCANP13611 3396 aa3.71□□□□□ -1.82
SCN1A-216ENST00000637968 HRES1P13985 223 aa3.71□□□□□ -1.82
SCN1A-216ENST00000637968 CR1P17927 2039 aa3.71□□□□□ -1.82
SCN1A-216ENST00000637968 Q6ZR54 194 aa3.7□□□□□ -1.82
SCN1A-216ENST00000637968 Q8NDZ9 215 aa3.7□□□□□ -1.82
SCN1A-216ENST00000637968 CDH23Q9H251 3354 aa3.7□□□□□ -1.82
SCN1A-216ENST00000637968 RTL8CO15255 209 aa3.7□□□□□ -1.82
SCN1A-216ENST00000637968 IGLV1-50A0A075B6I6 118 aa3.69□□□□□ -1.82
SCN1A-216ENST00000637968 RPL37AP8A6NKH3 93 aa3.69□□□□□ -1.82
SCN1A-216ENST00000637968 SPATA8Q6RVD6 105 aa3.69□□□□□ -1.82
SCN1A-216ENST00000637968 Q6ZRX8 168 aa3.69□□□□□ -1.82
SCN1A-216ENST00000637968 NUPR2A6NF83 97 aa3.69□□□□□ -1.82
SCN1A-216ENST00000637968 ANKRD17O75179 2603 aaKnown RBP3.67□□□□□ -1.82
SCN1A-216ENST00000637968 HELZ2Q9BYK8 2649 aaKnown RBP3.67□□□□□ -1.82
SCN1A-216ENST00000637968 PLAC8Q9NZF1 115 aa3.67□□□□□ -1.82
SCN1A-216ENST00000637968 LELP1Q5T871 98 aa3.67□□□□□ -1.82
SCN1A-216ENST00000637968 LY6G6CO95867 125 aa3.67□□□□□ -1.82
SCN1A-216ENST00000637968 SSBP3-AS1Q7Z2R9 100 aa3.66□□□□□ -1.82
SCN1A-216ENST00000637968 SPINK6Q6UWN8 80 aa3.66□□□□□ -1.82
SCN1A-216ENST00000637968 X6R8D5 127 aa3.66□□□□□ -1.82
SCN1A-216ENST00000637968 KRTAP24-1Q3LI83 254 aa3.66□□□□□ -1.82
SCN1A-216ENST00000637968 IGLV8-61A0A075B6I0 122 aa3.65□□□□□ -1.82
SCN1A-216ENST00000637968 KRTAP25-1Q3LHN0 102 aa3.65□□□□□ -1.82
SCN1A-216ENST00000637968 IGFL1Q6UW32 110 aa3.65□□□□□ -1.82
SCN1A-216ENST00000637968 IGLV5-37A0A075B6J1 123 aa3.65□□□□□ -1.83
SCN1A-216ENST00000637968 MKI67P46013 3256 aaKnown RBP3.64□□□□□ -1.83
SCN1A-216ENST00000637968 DMAC1Q96GE9 116 aa3.64□□□□□ -1.83
SCN1A-216ENST00000637968 KRTAP29-1A8MX34 341 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-216ENST00000637968 DNAH14Q0VDD8 3507 aa3.64□□□□□ -1.83
SCN1A-216ENST00000637968 C19orf73Q9NVV2 129 aa3.63□□□□□ -1.83
SCN1A-216ENST00000637968 MYO15AQ9UKN7 3530 aa3.62□□□□□ -1.83
SCN1A-216ENST00000637968 IGLV9-49A0A0B4J1Y8 123 aa3.61□□□□□ -1.83
SCN1A-216ENST00000637968 LUZP6Q538Z0 58 aa3.61□□□□□ -1.83
SCN1A-216ENST00000637968 NOTCH2NLQ7Z3S9 236 aa3.61□□□□□ -1.83
SCN1A-216ENST00000637968 TNP2Q05952 138 aa3.61□□□□□ -1.83
SCN1A-216ENST00000637968 MRPL34Q9BQ48 92 aaKnown RBP3.61□□□□□ -1.83
SCN1A-216ENST00000637968 A0A0G2JQZ4 141 aa3.6□□□□□ -1.83
SCN1A-216ENST00000637968 A0A1W2PNN7 141 aa3.6□□□□□ -1.83
SCN1A-216ENST00000637968 C8orf17Q9NRJ1 99 aa3.6□□□□□ -1.83
SCN1A-216ENST00000637968 UNC80Q8N2C7 3258 aa3.6□□□□□ -1.83
SCN1A-216ENST00000637968 SPEGQ15772 3267 aa3.6□□□□□ -1.83
SCN1A-216ENST00000637968 MMP24-AS1A0A0U1RRL7 71 aa3.59□□□□□ -1.83
SCN1A-216ENST00000637968 MGAM2Q2M2H8 2515 aa3.59□□□□□ -1.83
SCN1A-216ENST00000637968 NBEAQ8NFP9 2946 aa3.59□□□□□ -1.83
SCN1A-216ENST00000637968 ZNF861PO60384 105 aa3.59□□□□□ -1.83
SCN1A-216ENST00000637968 MAST4O15021 2626 aa3.59□□□□□ -1.84
SCN1A-216ENST00000637968 NDUFAF8A1L188 74 aa3.58□□□□□ -1.84
SCN1A-216ENST00000637968 WWC2-AS2Q96NR7 200 aa3.58□□□□□ -1.84
SCN1A-216ENST00000637968 DNAH10OSP0CZ25 163 aa3.58□□□□□ -1.84
SCN1A-216ENST00000637968 RANBP2P49792 3224 aaKnown RBP3.58□□□□□ -1.84
SCN1A-216ENST00000637968 SPINK1P00995 79 aa3.57□□□□□ -1.84
SCN1A-216ENST00000637968 SZT2Q5T011 3432 aa3.57□□□□□ -1.84
SCN1A-216ENST00000637968 PRLHP81277 87 aa3.57□□□□□ -1.84
SCN1A-216ENST00000637968 LINC00483Q53H64 154 aa3.57□□□□□ -1.84
SCN1A-216ENST00000637968 MGAQ8IWI9 3026 aa3.56□□□□□ -1.84
SCN1A-216ENST00000637968 TLX1NBP0CAT3 122 aa3.56□□□□□ -1.84
SCN1A-216ENST00000637968 PRR34Q9NV39 138 aa3.56□□□□□ -1.84
SCN1A-216ENST00000637968 COL6A3P12111 3177 aa3.56□□□□□ -1.84
SCN1A-216ENST00000637968 CFAP46Q8IYW2 2715 aa3.55□□□□□ -1.84
SCN1A-216ENST00000637968 IGLV7-43P04211 117 aa3.55□□□□□ -1.84
SCN1A-216ENST00000637968 CFAP54Q96N23 3096 aa3.55□□□□□ -1.84
SCN1A-216ENST00000637968 A8MUU9 505 aa3.55□□□□□ -1.84
SCN1A-216ENST00000637968 CHTF8P0CG12 524 aa3.55□□□□□ -1.84
SCN1A-216ENST00000637968 SEC61BP60468 96 aaKnown RBP3.55□□□□□ -1.84
SCN1A-216ENST00000637968 C20orf166-AS1Q96NR2 134 aa3.55□□□□□ -1.84
SCN1A-216ENST00000637968 C5orf42Q9H799 3197 aa3.55□□□□□ -1.84
SCN1A-216ENST00000637968 ATRQ13535 2644 aa3.55□□□□□ -1.84
SCN1A-216ENST00000637968 A0A1B0GVX0 72 aa3.55□□□□□ -1.84
SCN1A-216ENST00000637968 SETXQ7Z333 2677 aaKnown RBP3.54□□□□□ -1.84
SCN1A-216ENST00000637968 LINC00472Q9H8W2 130 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 117 ms