RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 ANKRD17O75179 2603 aaKnown RBP4.56□□□□□ -1.68
SCN1A-213ENST00000636759 SPANXA2-OT1Q8N9U9 137 aa4.55□□□□□ -1.68
SCN1A-213ENST00000636759 Q8NDZ9 215 aa4.55□□□□□ -1.68
SCN1A-213ENST00000636759 ZNF462Q96JM2 2506 aa4.55□□□□□ -1.68
SCN1A-213ENST00000636759 ACACBO00763 2458 aa4.55□□□□□ -1.68
SCN1A-213ENST00000636759 LINC00313P59037 77 aa4.55□□□□□ -1.68
SCN1A-213ENST00000636759 PRAC1Q96KF2 57 aa4.55□□□□□ -1.68
SCN1A-213ENST00000636759 TEX15Q9BXT5 2789 aa4.55□□□□□ -1.68
SCN1A-213ENST00000636759 DEFB105AQ8NG35 78 aa4.54□□□□□ -1.68
SCN1A-213ENST00000636759 C4orf3Q8WVX3 66 aa4.54□□□□□ -1.68
SCN1A-213ENST00000636759 IGHV4-30-4P0DP06 118 aa4.54□□□□□ -1.68
SCN1A-213ENST00000636759 C18orf65Q6ZTR6 163 aa4.54□□□□□ -1.68
SCN1A-213ENST00000636759 IGLV10-54A0A075B6I4 117 aa4.53□□□□□ -1.68
SCN1A-213ENST00000636759 DNAJC9-AS1A6NH13 148 aa4.53□□□□□ -1.68
SCN1A-213ENST00000636759 MAP6D1Q9H9H5 199 aa4.53□□□□□ -1.68
SCN1A-213ENST00000636759 A0A1B0GW54 56 aa4.53□□□□□ -1.68
SCN1A-213ENST00000636759 KIAA0087Q14695 138 aa4.53□□□□□ -1.68
SCN1A-213ENST00000636759 KPRPQ5T749 579 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-213ENST00000636759 COA5Q86WW8 74 aa4.53□□□□□ -1.68
SCN1A-213ENST00000636759 CHD6Q8TD26 2715 aa4.52□□□□□ -1.69
SCN1A-213ENST00000636759 K7EQZ3 153 aa4.52□□□□□ -1.69
SCN1A-213ENST00000636759 UNQ6190/PRO20217Q6UXQ8 127 aa4.52□□□□□ -1.69
SCN1A-213ENST00000636759 WFDC13Q8IUB5 93 aa4.52□□□□□ -1.69
SCN1A-213ENST00000636759 KCNQ1DNQ9H478 68 aa4.52□□□□□ -1.69
SCN1A-213ENST00000636759 CHCHD10Q8WYQ3 142 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-213ENST00000636759 XAGE1AQ9HD64 81 aa4.52□□□□□ -1.69
SCN1A-213ENST00000636759 NF1P21359 2839 aa4.52□□□□□ -1.69
SCN1A-213ENST00000636759 CENPEQ02224 2701 aa4.51□□□□□ -1.69
SCN1A-213ENST00000636759 H0Y9P7 68 aa4.51□□□□□ -1.69
SCN1A-213ENST00000636759 SLURP1P55000 103 aa4.51□□□□□ -1.69
SCN1A-213ENST00000636759 SPAG11AQ6PDA7 123 aa4.51□□□□□ -1.69
SCN1A-213ENST00000636759 MYO18BQ8IUG5 2567 aa4.51□□□□□ -1.69
SCN1A-213ENST00000636759 SPG11Q96JI7 2443 aa4.51□□□□□ -1.69
SCN1A-213ENST00000636759 H3BPC8 53 aa4.51□□□□□ -1.69
SCN1A-213ENST00000636759 J3QKU1 62 aa4.5□□□□□ -1.69
SCN1A-213ENST00000636759 DEFB116Q30KQ4 102 aa4.5□□□□□ -1.69
SCN1A-213ENST00000636759 WFDC10BQ8IUB3 73 aa4.5□□□□□ -1.69
SCN1A-213ENST00000636759 A0A1B0GUV1 79 aa4.5□□□□□ -1.69
SCN1A-213ENST00000636759 ANGP03950 147 aaKnown RBP4.5□□□□□ -1.69
SCN1A-213ENST00000636759 DEFB136Q30KP8 78 aa4.5□□□□□ -1.69
SCN1A-213ENST00000636759 CYSRT1A8MQ03 144 aa4.49□□□□□ -1.69
SCN1A-213ENST00000636759 GIG44P09565 113 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-213ENST00000636759 DSCR10P59022 87 aa4.49□□□□□ -1.69
SCN1A-213ENST00000636759 C1orf137Q5JT78 98 aa4.49□□□□□ -1.69
SCN1A-213ENST00000636759 C16orf74Q96GX8 76 aa4.49□□□□□ -1.69
SCN1A-213ENST00000636759 LINC01558Q9Y6Z2 57 aa4.49□□□□□ -1.69
SCN1A-213ENST00000636759 LINC00528Q8N1L1 170 aa4.48□□□□□ -1.69
SCN1A-213ENST00000636759 Q8NBF4 154 aa4.48□□□□□ -1.69
SCN1A-213ENST00000636759 USP9YO00507 2555 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-213ENST00000636759 GYPEP15421 78 aa4.48□□□□□ -1.69
SCN1A-213ENST00000636759 SPINK7P58062 85 aa4.48□□□□□ -1.69
SCN1A-213ENST00000636759 ITPR3Q14573 2671 aa4.47□□□□□ -1.69
SCN1A-213ENST00000636759 REG3AQ06141 175 aa4.47□□□□□ -1.69
SCN1A-213ENST00000636759 ODF3L2Q3SX64 289 aa4.47□□□□□ -1.69
SCN1A-213ENST00000636759 RETNLBQ9BQ08 111 aa4.47□□□□□ -1.69
SCN1A-213ENST00000636759 A0A0J9YWU9 116 aa4.47□□□□□ -1.69
SCN1A-213ENST00000636759 A0A1W2PNM2 257 aa4.47□□□□□ -1.69
SCN1A-213ENST00000636759 ZFYVE26Q68DK2 2539 aa4.47□□□□□ -1.69
SCN1A-213ENST00000636759 A0A096LPF7 62 aa4.47□□□□□ -1.69
SCN1A-213ENST00000636759 IGLV5-48A0A075B6I7 105 aa4.46□□□□□ -1.69
SCN1A-213ENST00000636759 POLQO75417 2590 aa4.46□□□□□ -1.7
SCN1A-213ENST00000636759 DEFB130BP0DP73 79 aa4.46□□□□□ -1.7
SCN1A-213ENST00000636759 DEFB130AP0DP74 79 aa4.46□□□□□ -1.7
SCN1A-213ENST00000636759 LRRK2Q5S007 2527 aa4.45□□□□□ -1.7
SCN1A-213ENST00000636759 CSPG4Q6UVK1 2322 aa4.45□□□□□ -1.7
SCN1A-213ENST00000636759 DYNC2H1Q8NCM8 4307 aaKnown RBP4.45□□□□□ -1.7
SCN1A-213ENST00000636759 PLA2G1BP04054 148 aaKnown RBP4.45□□□□□ -1.7
SCN1A-213ENST00000636759 ADM2Q7Z4H4 148 aa4.45□□□□□ -1.7
SCN1A-213ENST00000636759 Q8N377 158 aa4.45□□□□□ -1.7
SCN1A-213ENST00000636759 IGKV2D-24A0A075B6R9 120 aa4.44□□□□□ -1.7
SCN1A-213ENST00000636759 Q8NAQ8 132 aa4.44□□□□□ -1.7
SCN1A-213ENST00000636759 C19orf73Q9NVV2 129 aa4.44□□□□□ -1.7
SCN1A-213ENST00000636759 CSNK1G2-AS1Q8NCQ2 148 aa4.44□□□□□ -1.7
SCN1A-213ENST00000636759 ZNF706Q9Y5V0 76 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-213ENST00000636759 PTPN13Q12923 2485 aa4.43□□□□□ -1.7
SCN1A-213ENST00000636759 IGLV7-46A0A075B6I9 117 aa4.43□□□□□ -1.7
SCN1A-213ENST00000636759 KRTAP10-3P60369 221 aa4.42□□□□□ -1.7
SCN1A-213ENST00000636759 DNAH7Q8WXX0 4024 aa4.42□□□□□ -1.7
SCN1A-213ENST00000636759 EPG5Q9HCE0 2579 aa4.42□□□□□ -1.7
SCN1A-213ENST00000636759 IGLV1-51P01701 117 aa4.42□□□□□ -1.7
SCN1A-213ENST00000636759 ASB16-AS1Q495Z4 193 aa4.42□□□□□ -1.7
SCN1A-213ENST00000636759 PCOTHQ58A44 107 aa4.42□□□□□ -1.7
SCN1A-213ENST00000636759 CAMK2N2Q96S95 79 aa4.42□□□□□ -1.7
SCN1A-213ENST00000636759 C6orf48Q9UBA6 75 aa4.42□□□□□ -1.7
SCN1A-213ENST00000636759 VWFP04275 2813 aa4.42□□□□□ -1.7
SCN1A-213ENST00000636759 ABCA12Q86UK0 2595 aa4.42□□□□□ -1.7
SCN1A-213ENST00000636759 FAM208BQ5VWN6 2430 aa4.42□□□□□ -1.7
SCN1A-213ENST00000636759 GVQW2A0A096LPI5 108 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-213ENST00000636759 SPRR4Q96PI1 79 aa4.42□□□□□ -1.7
SCN1A-213ENST00000636759 C9orf163Q8N9P6 203 aa4.41□□□□□ -1.7
SCN1A-213ENST00000636759 DHRS4-AS1Q9P1J3 65 aa4.41□□□□□ -1.7
SCN1A-213ENST00000636759 NAV2Q8IVL1 2488 aa4.41□□□□□ -1.7
SCN1A-213ENST00000636759 C7orf33Q8WU49 177 aa4.41□□□□□ -1.7
SCN1A-213ENST00000636759 LINC00476Q8WZB0 136 aa4.41□□□□□ -1.7
SCN1A-213ENST00000636759 SMR3AQ99954 134 aa4.41□□□□□ -1.7
SCN1A-213ENST00000636759 OTOGQ6ZRI0 2925 aa4.41□□□□□ -1.7
SCN1A-213ENST00000636759 PRO0255Q9UI72 69 aa4.4□□□□□ -1.7
SCN1A-213ENST00000636759 CMC4P56277 68 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-213ENST00000636759 CNBPP62633 177 aaKnown RBP4.4□□□□□ -1.71
SCN1A-213ENST00000636759 FLNAP21333 2647 aaKnown RBP4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms