RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 ST20-AS1Q8NBB2 130 aa4.17□□□□□ -1.74
SCN1A-212ENST00000636194 KMT2BQ9UMN6 2715 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-212ENST00000636194 COL6A5A8TX70 2615 aa4.17□□□□□ -1.74
SCN1A-212ENST00000636194 K7EQZ3 153 aa4.17□□□□□ -1.74
SCN1A-212ENST00000636194 C18orf65Q6ZTR6 163 aa4.17□□□□□ -1.74
SCN1A-212ENST00000636194 UNC79Q9P2D8 2635 aa4.17□□□□□ -1.74
SCN1A-212ENST00000636194 NBDYA0A0U1RRE5 68 aa4.17□□□□□ -1.74
SCN1A-212ENST00000636194 ODF3L2Q3SX64 289 aa4.17□□□□□ -1.74
SCN1A-212ENST00000636194 TM2D3Q9BRN9 247 aa4.17□□□□□ -1.74
SCN1A-212ENST00000636194 OBSCN-AS1Q96MR7 158 aa4.16□□□□□ -1.74
SCN1A-212ENST00000636194 PRR15Q8IV56 129 aa4.16□□□□□ -1.74
SCN1A-212ENST00000636194 ADAMTSL4-AS1Q5T5F5 129 aa4.15□□□□□ -1.74
SCN1A-212ENST00000636194 C9orf163Q8N9P6 203 aa4.15□□□□□ -1.75
SCN1A-212ENST00000636194 Q6ZSN1 163 aa4.15□□□□□ -1.75
SCN1A-212ENST00000636194 H1FX-AS1Q4G0G2 97 aa4.14□□□□□ -1.75
SCN1A-212ENST00000636194 FLNAP21333 2647 aaKnown RBP4.14□□□□□ -1.75
SCN1A-212ENST00000636194 AVPP01185 164 aa4.13□□□□□ -1.75
SCN1A-212ENST00000636194 GVQW2A0A096LPI5 108 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-212ENST00000636194 A8MUN3 132 aa4.13□□□□□ -1.75
SCN1A-212ENST00000636194 LINC00315P59091 139 aa4.13□□□□□ -1.75
SCN1A-212ENST00000636194 ZNF295-AS1Q8N0V1 137 aa4.12□□□□□ -1.75
SCN1A-212ENST00000636194 PHF5AQ7RTV0 110 aaKnown RBP4.12□□□□□ -1.75
SCN1A-212ENST00000636194 TEX15Q9BXT5 2789 aa4.12□□□□□ -1.75
SCN1A-212ENST00000636194 Q6ZSA8 131 aa4.12□□□□□ -1.75
SCN1A-212ENST00000636194 IGLV7-46A0A075B6I9 117 aa4.11□□□□□ -1.75
SCN1A-212ENST00000636194 FAM104AQ969W3 186 aa4.11□□□□□ -1.75
SCN1A-212ENST00000636194 SPINK7P58062 85 aa4.11□□□□□ -1.75
SCN1A-212ENST00000636194 A0A1B0GVX0 72 aa4.11□□□□□ -1.75
SCN1A-212ENST00000636194 SMR3AQ99954 134 aa4.11□□□□□ -1.75
SCN1A-212ENST00000636194 DMAC1Q96GE9 116 aa4.1□□□□□ -1.75
SCN1A-212ENST00000636194 H3BS24 57 aa4.1□□□□□ -1.75
SCN1A-212ENST00000636194 DSCR10P59022 87 aa4.1□□□□□ -1.75
SCN1A-212ENST00000636194 IGLV7-43P04211 117 aa4.1□□□□□ -1.75
SCN1A-212ENST00000636194 H7BZZ5 65 aa4.09□□□□□ -1.75
SCN1A-212ENST00000636194 COL4A1P02462 1669 aa4.09□□□□□ -1.75
SCN1A-212ENST00000636194 C11orf21Q9P2W6 132 aa4.09□□□□□ -1.75
SCN1A-212ENST00000636194 DNAH10OSP0CZ25 163 aa4.09□□□□□ -1.76
SCN1A-212ENST00000636194 ZNF861PO60384 105 aa4.09□□□□□ -1.76
SCN1A-212ENST00000636194 TSPEAR-AS2P59090 65 aa4.08□□□□□ -1.76
SCN1A-212ENST00000636194 CHD6Q8TD26 2715 aa4.07□□□□□ -1.76
SCN1A-212ENST00000636194 SPANXA2-OT1Q8N9U9 137 aa4.07□□□□□ -1.76
SCN1A-212ENST00000636194 ITPR2Q14571 2701 aa4.07□□□□□ -1.76
SCN1A-212ENST00000636194 COX8CQ7Z4L0 72 aa4.07□□□□□ -1.76
SCN1A-212ENST00000636194 SETXQ7Z333 2677 aaKnown RBP4.07□□□□□ -1.76
SCN1A-212ENST00000636194 NSD1Q96L73 2696 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-212ENST00000636194 Q8N1X5 172 aa4.04□□□□□ -1.76
SCN1A-212ENST00000636194 GAS8-AS1O95177 125 aa4.04□□□□□ -1.76
SCN1A-212ENST00000636194 IGLV1-50A0A075B6I6 118 aa4.03□□□□□ -1.76
SCN1A-212ENST00000636194 A0A1B0GU33 70 aa4.03□□□□□ -1.76
SCN1A-212ENST00000636194 CSAG1Q6PB30 78 aa4.02□□□□□ -1.77
SCN1A-212ENST00000636194 CENPFP49454 3210 aa4.02□□□□□ -1.77
SCN1A-212ENST00000636194 GCN1Q92616 2671 aaKnown RBP4.02□□□□□ -1.77
SCN1A-212ENST00000636194 A0A1W2PNU3 283 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-212ENST00000636194 LINC00528Q8N1L1 170 aa4.02□□□□□ -1.77
SCN1A-212ENST00000636194 KLKP1Q107X0 134 aa4.02□□□□□ -1.77
SCN1A-212ENST00000636194 IGSF10Q6WRI0 2623 aa4.02□□□□□ -1.77
SCN1A-212ENST00000636194 R4GN34 69 aa4.02□□□□□ -1.77
SCN1A-212ENST00000636194 LINC01546A6NGU7 62 aa4.01□□□□□ -1.77
SCN1A-212ENST00000636194 LITAFQ99732 161 aa4.01□□□□□ -1.77
SCN1A-212ENST00000636194 KCNQ1DNQ9H478 68 aa4.01□□□□□ -1.77
SCN1A-212ENST00000636194 TNP2Q05952 138 aa4.01□□□□□ -1.77
SCN1A-212ENST00000636194 C15orf56Q8N910 161 aa4□□□□□ -1.77
SCN1A-212ENST00000636194 S4R3F8 94 aa4□□□□□ -1.77
SCN1A-212ENST00000636194 UTP20O75691 2785 aaKnown RBP4□□□□□ -1.77
SCN1A-212ENST00000636194 IGFL1Q6UW32 110 aa3.99□□□□□ -1.77
SCN1A-212ENST00000636194 KRTAP16-1A8MUX0 517 aa3.98□□□□□ -1.77
SCN1A-212ENST00000636194 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-212ENST00000636194 SMR3BP02814 79 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-212ENST00000636194 FAM168BA1KXE4 195 aa3.98□□□□□ -1.77
SCN1A-212ENST00000636194 SEC61BP60468 96 aaKnown RBP3.97□□□□□ -1.77
SCN1A-212ENST00000636194 PRR26Q8N8Z3 221 aa3.97□□□□□ -1.77
SCN1A-212ENST00000636194 Q8NAQ8 132 aa3.97□□□□□ -1.77
SCN1A-212ENST00000636194 PRO0461Q9UI25 63 aa3.97□□□□□ -1.77
SCN1A-212ENST00000636194 ROMO1P60602 79 aa3.97□□□□□ -1.77
SCN1A-212ENST00000636194 C10orf142B7Z368 130 aa3.97□□□□□ -1.77
SCN1A-212ENST00000636194 FAM218AQ96MZ4 157 aa3.96□□□□□ -1.78
SCN1A-212ENST00000636194 COL4A2P08572 1712 aa3.95□□□□□ -1.78
SCN1A-212ENST00000636194 COL4A3Q01955 1670 aa3.95□□□□□ -1.78
SCN1A-212ENST00000636194 A0A1W2PNM2 257 aa3.95□□□□□ -1.78
SCN1A-212ENST00000636194 A0A087WTM6 91 aa3.95□□□□□ -1.78
SCN1A-212ENST00000636194 Q8N9P0 234 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-212ENST00000636194 A0A1W2PNN7 141 aa3.94□□□□□ -1.78
SCN1A-212ENST00000636194 KRTAP10-9P60411 292 aa3.93□□□□□ -1.78
SCN1A-212ENST00000636194 Q6ZPA2 131 aa3.93□□□□□ -1.78
SCN1A-212ENST00000636194 SPRR4Q96PI1 79 aa3.92□□□□□ -1.78
SCN1A-212ENST00000636194 Q5VSD8 79 aa3.92□□□□□ -1.78
SCN1A-212ENST00000636194 C20orf166-AS1Q96NR2 134 aa3.92□□□□□ -1.78
SCN1A-212ENST00000636194 FAM229BQ4G0N7 80 aa3.91□□□□□ -1.78
SCN1A-212ENST00000636194 WISP2O76076 250 aa3.91□□□□□ -1.78
SCN1A-212ENST00000636194 Q75L30 129 aa3.9□□□□□ -1.78
SCN1A-212ENST00000636194 APCP25054 2843 aa3.9□□□□□ -1.79
SCN1A-212ENST00000636194 CNBPP62633 177 aaKnown RBP3.9□□□□□ -1.79
SCN1A-212ENST00000636194 URB1-AS1Q96HZ7 61 aa3.9□□□□□ -1.79
SCN1A-212ENST00000636194 A0A096LNJ9 63 aa3.9□□□□□ -1.79
SCN1A-212ENST00000636194 KRTAP24-1Q3LI83 254 aa3.89□□□□□ -1.79
SCN1A-212ENST00000636194 CDSNQ15517 529 aa3.89□□□□□ -1.79
SCN1A-212ENST00000636194 Q8N377 158 aa3.89□□□□□ -1.79
SCN1A-212ENST00000636194 P0C880 135 aa3.89□□□□□ -1.79
SCN1A-212ENST00000636194 ZNF292O60281 2723 aa3.88□□□□□ -1.79
SCN1A-212ENST00000636194 PRR34Q9NV39 138 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms