RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 IFITM1P13164 125 aa12.33□□□□□ -0.44
CLN3-240ENST00000631023 TRAV23DV6A0A075B6W5 121 aa12.31□□□□□ -0.44
CLN3-240ENST00000631023 OR13C6PQ8NH95 151 aa12.31□□□□□ -0.44
CLN3-240ENST00000631023 PPDPFQ9H3Y8 114 aa12.31□□□□□ -0.44
CLN3-240ENST00000631023 FAM229BQ4G0N7 80 aa12.3□□□□□ -0.44
CLN3-240ENST00000631023 B5MCH6 92 aa12.29□□□□□ -0.44
CLN3-240ENST00000631023 ANAPC11Q9NYG5 84 aa12.29□□□□□ -0.44
CLN3-240ENST00000631023 ZNF706Q9Y5V0 76 aaPredicted RBP12.29□□□□□ -0.44
CLN3-240ENST00000631023 A0A087X002 238 aa12.27□□□□□ -0.44
CLN3-240ENST00000631023 ZNF73O43830 326 aaPredicted RBP12.27□□□□□ -0.44
CLN3-240ENST00000631023 HINT1P49773 126 aaPredicted RBP12.27□□□□□ -0.44
CLN3-240ENST00000631023 MUSTN1Q8IVN3 82 aa12.26□□□□□ -0.45
CLN3-240ENST00000631023 SMCR5Q8TEV8 140 aa12.26□□□□□ -0.45
CLN3-240ENST00000631023 JOSD1Q15040 202 aaPredicted RBP12.26□□□□□ -0.45
CLN3-240ENST00000631023 Q6ZRX8 168 aa12.26□□□□□ -0.45
CLN3-240ENST00000631023 TYMSOSQ8TAI1 123 aa12.26□□□□□ -0.45
CLN3-240ENST00000631023 SPRR4Q96PI1 79 aa12.24□□□□□ -0.45
CLN3-240ENST00000631023 COX8AP10176 69 aa12.21□□□□□ -0.46
CLN3-240ENST00000631023 KRTAP13-2Q52LG2 175 aa12.19□□□□□ -0.46
CLN3-240ENST00000631023 Q9BRP9 147 aa12.19□□□□□ -0.46
CLN3-240ENST00000631023 A6NDN8 102 aa12.18□□□□□ -0.46
CLN3-240ENST00000631023 VAMP8Q9BV40 100 aa12.18□□□□□ -0.46
CLN3-240ENST00000631023 TMA7Q9Y2S6 64 aaKnown RBP12.18□□□□□ -0.46
CLN3-240ENST00000631023 HMCN2Q8NDA2 5059 aa12.18□□□□□ -0.46
CLN3-240ENST00000631023 DLEU1O43261 78 aa12.18□□□□□ -0.46
CLN3-240ENST00000631023 PAM16Q9Y3D7 125 aa12.18□□□□□ -0.46
CLN3-240ENST00000631023 TRAV13-2A0A0B4J235 113 aa12.17□□□□□ -0.46
CLN3-240ENST00000631023 ERC2-IT1O76042 136 aa12.17□□□□□ -0.46
CLN3-240ENST00000631023 SPATA45Q537H7 98 aa12.17□□□□□ -0.46
CLN3-240ENST00000631023 C6orf99Q4VX62 202 aa12.14□□□□□ -0.47
CLN3-240ENST00000631023 GAGE2AQ6NT46 116 aa12.14□□□□□ -0.47
CLN3-240ENST00000631023 C14orf144Q96I85 54 aa12.14□□□□□ -0.47
CLN3-240ENST00000631023 HIST1H4GQ99525 98 aa12.13□□□□□ -0.47
CLN3-240ENST00000631023 COX7BP24311 80 aa12.13□□□□□ -0.47
CLN3-240ENST00000631023 LINC00483Q53H64 154 aa12.13□□□□□ -0.47
CLN3-240ENST00000631023 DHRS4-AS1Q9P1J3 65 aa12.13□□□□□ -0.47
CLN3-240ENST00000631023 C3orf22Q8N5N4 141 aa12.12□□□□□ -0.47
CLN3-240ENST00000631023 TRBV7-6A0A0J9YX20 115 aa12.11□□□□□ -0.47
CLN3-240ENST00000631023 A4D1N5 150 aa12.11□□□□□ -0.47
CLN3-240ENST00000631023 ELOF1P60002 83 aaKnown RBP12.11□□□□□ -0.47
CLN3-240ENST00000631023 LINC00304Q8N9R0 145 aa12.11□□□□□ -0.47
CLN3-240ENST00000631023 TSPAN13O95857 204 aa12.1□□□□□ -0.47
CLN3-240ENST00000631023 SLC25A34Q6PIV7 304 aa12.09□□□□□ -0.47
CLN3-240ENST00000631023 HIGD1BQ9P298 99 aa12.08□□□□□ -0.48
CLN3-240ENST00000631023 A0A1B0GWB2 263 aa12.07□□□□□ -0.48
CLN3-240ENST00000631023 PYY3Q5JQD4 70 aa12.06□□□□□ -0.48
CLN3-240ENST00000631023 SMIM11BQ8TCY0 68 aa12.05□□□□□ -0.48
CLN3-240ENST00000631023 CTAG1AP78358 180 aa12.05□□□□□ -0.48
CLN3-240ENST00000631023 ST20-AS1Q8NBB2 130 aa12.05□□□□□ -0.48
CLN3-240ENST00000631023 C4orf48Q5BLP8 95 aa12.04□□□□□ -0.48
CLN3-240ENST00000631023 SPAG11AQ6PDA7 123 aa12.04□□□□□ -0.48
CLN3-240ENST00000631023 VAMP3Q15836 100 aa12.02□□□□□ -0.49
CLN3-240ENST00000631023 IGLV9-49A0A0B4J1Y8 123 aa12.01□□□□□ -0.49
CLN3-240ENST00000631023 C2orf91Q6ZV80 131 aa12.01□□□□□ -0.49
CLN3-240ENST00000631023 SSBP3-AS1Q7Z2R9 100 aa12.01□□□□□ -0.49
CLN3-240ENST00000631023 C12orf57Q99622 126 aa12.01□□□□□ -0.49
CLN3-240ENST00000631023 MOBPQ13875 183 aa12□□□□□ -0.49
CLN3-240ENST00000631023 PRR4Q16378 134 aa12□□□□□ -0.49
CLN3-240ENST00000631023 Q8NBF4 154 aa12□□□□□ -0.49
CLN3-240ENST00000631023 NHP2Q9NX24 153 aaKnown RBP12□□□□□ -0.49
CLN3-240ENST00000631023 TAL2Q16559 108 aa11.99□□□□□ -0.49
CLN3-240ENST00000631023 SPRR1BP22528 89 aa11.98□□□□□ -0.49
CLN3-240ENST00000631023 SLC25A20O43772 301 aa11.96□□□□□ -0.49
CLN3-240ENST00000631023 C9orf153Q5TBE3 101 aa11.96□□□□□ -0.5
CLN3-240ENST00000631023 DEFB105AQ8NG35 78 aa11.95□□□□□ -0.5
CLN3-240ENST00000631023 RAB37Q96AX2 223 aa11.95□□□□□ -0.5
CLN3-240ENST00000631023 LAMTOR3Q9UHA4 124 aa11.95□□□□□ -0.5
CLN3-240ENST00000631023 TEX49A0A1B0GTD5 131 aa11.94□□□□□ -0.5
CLN3-240ENST00000631023 CFC1BP0CG36 223 aa11.94□□□□□ -0.5
CLN3-240ENST00000631023 CFC1P0CG37 223 aa11.94□□□□□ -0.5
CLN3-240ENST00000631023 CEND1Q8N111 149 aa11.94□□□□□ -0.5
CLN3-240ENST00000631023 SPINK1P00995 79 aa11.93□□□□□ -0.5
CLN3-240ENST00000631023 LRP2P98164 4655 aa11.93□□□□□ -0.5
CLN3-240ENST00000631023 TMEM238LA0A1B0GVL6 79 aa11.92□□□□□ -0.5
CLN3-240ENST00000631023 A6NJY4 79 aa11.92□□□□□ -0.5
CLN3-240ENST00000631023 A0A0B4J2C4 111 aa11.92□□□□□ -0.5
CLN3-240ENST00000631023 BVES-AS1Q5T3Y7 98 aa11.91□□□□□ -0.5
CLN3-240ENST00000631023 H7C2G1 150 aa11.9□□□□□ -0.5
CLN3-240ENST00000631023 LINC00575Q6W349 94 aa11.9□□□□□ -0.5
CLN3-240ENST00000631023 IGLV5-48A0A075B6I7 105 aa11.89□□□□□ -0.51
CLN3-240ENST00000631023 UQCR10Q9UDW1 63 aa11.88□□□□□ -0.51
CLN3-240ENST00000631023 hADV29S1A0JD25 119 aa11.88□□□□□ -0.51
CLN3-240ENST00000631023 RETNLBQ9BQ08 111 aa11.88□□□□□ -0.51
CLN3-240ENST00000631023 Q1RN00 199 aa11.87□□□□□ -0.51
CLN3-240ENST00000631023 HSD52Q0P140 79 aa11.86□□□□□ -0.51
CLN3-240ENST00000631023 UBR4Q5T4S7 5183 aa11.86□□□□□ -0.51
CLN3-240ENST00000631023 LINC01547P58512 204 aaPredicted RBP11.85□□□□□ -0.51
CLN3-240ENST00000631023 RPS29P62273 56 aaKnown RBP11.85□□□□□ -0.51
CLN3-240ENST00000631023 PRO1854Q9UHT4 67 aa11.85□□□□□ -0.51
CLN3-240ENST00000631023 FXYD2P54710 66 aa11.84□□□□□ -0.51
CLN3-240ENST00000631023 SNCGO76070 127 aa11.82□□□□□ -0.52
CLN3-240ENST00000631023 SMIM29Q86T20 159 aa11.82□□□□□ -0.52
CLN3-240ENST00000631023 Q8N377 158 aa11.82□□□□□ -0.52
CLN3-240ENST00000631023 Q6ZQY7 126 aa11.81□□□□□ -0.52
CLN3-240ENST00000631023 PRO1933Q9H354 126 aa11.81□□□□□ -0.52
CLN3-240ENST00000631023 LPAP08519 4548 aa11.81□□□□□ -0.52
CLN3-240ENST00000631023 H0YGX0 51 aa11.8□□□□□ -0.52
CLN3-240ENST00000631023 IGLV7-46A0A075B6I9 117 aa11.79□□□□□ -0.52
CLN3-240ENST00000631023 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.79□□□□□ -0.52
CLN3-240ENST00000631023 FP248Q71RG6 208 aaPredicted RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms