RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 DLEU1O43261 78 aa12.21□□□□□ -0.45
PTCD3-220ENST00000627371 KRTAP1-4P0C5Y4 121 aa12.21□□□□□ -0.45
PTCD3-220ENST00000627371 MUSTN1Q8IVN3 82 aa12.21□□□□□ -0.45
PTCD3-220ENST00000627371 LINC00518Q8N0U6 118 aa12.21□□□□□ -0.45
PTCD3-220ENST00000627371 TRAV23DV6A0A075B6W5 121 aa12.19□□□□□ -0.46
PTCD3-220ENST00000627371 ETDCA0A1B0GVM5 59 aa12.18□□□□□ -0.46
PTCD3-220ENST00000627371 CBY1Q9Y3M2 126 aa12.18□□□□□ -0.46
PTCD3-220ENST00000627371 OR13C6PQ8NH95 151 aa12.17□□□□□ -0.46
PTCD3-220ENST00000627371 C14orf144Q96I85 54 aa12.17□□□□□ -0.46
PTCD3-220ENST00000627371 KRTAP10-8P60410 259 aa12.16□□□□□ -0.46
PTCD3-220ENST00000627371 HIGD2AQ9BW72 106 aa12.15□□□□□ -0.46
PTCD3-220ENST00000627371 B5MCH6 92 aa12.14□□□□□ -0.47
PTCD3-220ENST00000627371 ZNF73O43830 326 aaPredicted RBP12.14□□□□□ -0.47
PTCD3-220ENST00000627371 SLC25A34Q6PIV7 304 aa12.13□□□□□ -0.47
PTCD3-220ENST00000627371 PRR26Q8N8Z3 221 aa12.12□□□□□ -0.47
PTCD3-220ENST00000627371 Q6ZRX8 168 aa12.11□□□□□ -0.47
PTCD3-220ENST00000627371 HIST1H4GQ99525 98 aa12.11□□□□□ -0.47
PTCD3-220ENST00000627371 HIGD1BQ9P298 99 aa12.11□□□□□ -0.47
PTCD3-220ENST00000627371 SMCR5Q8TEV8 140 aa12.1□□□□□ -0.47
PTCD3-220ENST00000627371 TRAV13-2A0A0B4J235 113 aa12.08□□□□□ -0.48
PTCD3-220ENST00000627371 A4D1N5 150 aa12.08□□□□□ -0.48
PTCD3-220ENST00000627371 A6NDN8 102 aa12.08□□□□□ -0.48
PTCD3-220ENST00000627371 RPL13AP40429 203 aaKnown RBP12.08□□□□□ -0.48
PTCD3-220ENST00000627371 C2orf91Q6ZV80 131 aa12.08□□□□□ -0.48
PTCD3-220ENST00000627371 HINT1P49773 126 aaPredicted RBP12.07□□□□□ -0.48
PTCD3-220ENST00000627371 Q9BRP9 147 aa12.07□□□□□ -0.48
PTCD3-220ENST00000627371 A0A087X002 238 aa12.05□□□□□ -0.48
PTCD3-220ENST00000627371 FAM229BQ4G0N7 80 aa12.05□□□□□ -0.48
PTCD3-220ENST00000627371 SPRR4Q96PI1 79 aa12.05□□□□□ -0.48
PTCD3-220ENST00000627371 ANAPC11Q9NYG5 84 aa12.05□□□□□ -0.48
PTCD3-220ENST00000627371 ZNF706Q9Y5V0 76 aaPredicted RBP12.05□□□□□ -0.48
PTCD3-220ENST00000627371 CRYGAP11844 174 aa12.04□□□□□ -0.48
PTCD3-220ENST00000627371 C6orf99Q4VX62 202 aa12.04□□□□□ -0.48
PTCD3-220ENST00000627371 ERC2-IT1O76042 136 aa12.02□□□□□ -0.49
PTCD3-220ENST00000627371 ELOF1P60002 83 aaKnown RBP12.01□□□□□ -0.49
PTCD3-220ENST00000627371 COX7BP24311 80 aa12□□□□□ -0.49
PTCD3-220ENST00000627371 TAL2Q16559 108 aa12□□□□□ -0.49
PTCD3-220ENST00000627371 TRBV7-6A0A0J9YX20 115 aa11.99□□□□□ -0.49
PTCD3-220ENST00000627371 SMIM11BQ8TCY0 68 aa11.99□□□□□ -0.49
PTCD3-220ENST00000627371 C12orf57Q99622 126 aa11.99□□□□□ -0.49
PTCD3-220ENST00000627371 KRTAP13-2Q52LG2 175 aa11.98□□□□□ -0.49
PTCD3-220ENST00000627371 TYMSOSQ8TAI1 123 aa11.97□□□□□ -0.49
PTCD3-220ENST00000627371 DHRS4-AS1Q9P1J3 65 aa11.97□□□□□ -0.49
PTCD3-220ENST00000627371 A0A1B0GWB2 263 aa11.96□□□□□ -0.49
PTCD3-220ENST00000627371 LINC00483Q53H64 154 aa11.96□□□□□ -0.49
PTCD3-220ENST00000627371 CEND1Q8N111 149 aa11.96□□□□□ -0.49
PTCD3-220ENST00000627371 UQCR10Q9UDW1 63 aa11.96□□□□□ -0.49
PTCD3-220ENST00000627371 SMIM6P0DI80 62 aa11.94□□□□□ -0.5
PTCD3-220ENST00000627371 GAGE2AQ6NT46 116 aa11.94□□□□□ -0.5
PTCD3-220ENST00000627371 CFC1BP0CG36 223 aa11.93□□□□□ -0.5
PTCD3-220ENST00000627371 CFC1P0CG37 223 aa11.93□□□□□ -0.5
PTCD3-220ENST00000627371 A0A0B4J2C4 111 aa11.92□□□□□ -0.5
PTCD3-220ENST00000627371 HSD52Q0P140 79 aa11.92□□□□□ -0.5
PTCD3-220ENST00000627371 TMEM238LA0A1B0GVL6 79 aa11.91□□□□□ -0.5
PTCD3-220ENST00000627371 A6NJY4 79 aa11.91□□□□□ -0.5
PTCD3-220ENST00000627371 C3orf22Q8N5N4 141 aa11.91□□□□□ -0.5
PTCD3-220ENST00000627371 ST20-AS1Q8NBB2 130 aa11.91□□□□□ -0.5
PTCD3-220ENST00000627371 FXYD2P54710 66 aa11.9□□□□□ -0.5
PTCD3-220ENST00000627371 RAB37Q96AX2 223 aa11.9□□□□□ -0.5
PTCD3-220ENST00000627371 LOC105371267A0A1B0GV96 52 aa11.89□□□□□ -0.51
PTCD3-220ENST00000627371 HMCN2Q8NDA2 5059 aa11.89□□□□□ -0.51
PTCD3-220ENST00000627371 VAMP3Q15836 100 aa11.88□□□□□ -0.51
PTCD3-220ENST00000627371 NHP2Q9NX24 153 aaKnown RBP11.86□□□□□ -0.51
PTCD3-220ENST00000627371 SPRR1BP22528 89 aa11.85□□□□□ -0.51
PTCD3-220ENST00000627371 H7C2G1 150 aa11.84□□□□□ -0.51
PTCD3-220ENST00000627371 LINC00304Q8N9R0 145 aa11.84□□□□□ -0.51
PTCD3-220ENST00000627371 PRO1933Q9H354 126 aa11.84□□□□□ -0.51
PTCD3-220ENST00000627371 BVES-AS1Q5T3Y7 98 aa11.83□□□□□ -0.52
PTCD3-220ENST00000627371 PRO1854Q9UHT4 67 aa11.83□□□□□ -0.52
PTCD3-220ENST00000627371 SLC25A20O43772 301 aa11.82□□□□□ -0.52
PTCD3-220ENST00000627371 LINC00575Q6W349 94 aa11.82□□□□□ -0.52
PTCD3-220ENST00000627371 IGLV9-49A0A0B4J1Y8 123 aa11.81□□□□□ -0.52
PTCD3-220ENST00000627371 MOBPQ13875 183 aa11.8□□□□□ -0.52
PTCD3-220ENST00000627371 IGLV5-48A0A075B6I7 105 aa11.78□□□□□ -0.52
PTCD3-220ENST00000627371 TEX49A0A1B0GTD5 131 aa11.78□□□□□ -0.52
PTCD3-220ENST00000627371 TSPAN13O95857 204 aa11.78□□□□□ -0.52
PTCD3-220ENST00000627371 Q1RN00 199 aa11.78□□□□□ -0.52
PTCD3-220ENST00000627371 Q8NBF4 154 aa11.78□□□□□ -0.52
PTCD3-220ENST00000627371 DEFB105AQ8NG35 78 aa11.78□□□□□ -0.52
PTCD3-220ENST00000627371 hADV29S1A0JD25 119 aa11.77□□□□□ -0.53
PTCD3-220ENST00000627371 LINC01547P58512 204 aaPredicted RBP11.77□□□□□ -0.53
PTCD3-220ENST00000627371 SSBP3-AS1Q7Z2R9 100 aa11.77□□□□□ -0.53
PTCD3-220ENST00000627371 CTAG1AP78358 180 aa11.76□□□□□ -0.53
PTCD3-220ENST00000627371 C9orf153Q5TBE3 101 aa11.76□□□□□ -0.53
PTCD3-220ENST00000627371 SPAG11AQ6PDA7 123 aa11.76□□□□□ -0.53
PTCD3-220ENST00000627371 LAMTOR3Q9UHA4 124 aa11.76□□□□□ -0.53
PTCD3-220ENST00000627371 K7ERJ3 54 aa11.75□□□□□ -0.53
PTCD3-220ENST00000627371 H0YGX0 51 aa11.73□□□□□ -0.53
PTCD3-220ENST00000627371 C4orf48Q5BLP8 95 aa11.72□□□□□ -0.53
PTCD3-220ENST00000627371 Q6ZQY7 126 aa11.72□□□□□ -0.53
PTCD3-220ENST00000627371 TSTD3H0UI37 97 aa11.71□□□□□ -0.53
PTCD3-220ENST00000627371 SMIM29Q86T20 159 aa11.71□□□□□ -0.53
PTCD3-220ENST00000627371 Q8N377 158 aa11.71□□□□□ -0.53
PTCD3-220ENST00000627371 TRIAP1O43715 76 aa11.7□□□□□ -0.54
PTCD3-220ENST00000627371 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.7□□□□□ -0.54
PTCD3-220ENST00000627371 M0R143 59 aa11.68□□□□□ -0.54
PTCD3-220ENST00000627371 FAM218AQ96MZ4 157 aa11.68□□□□□ -0.54
PTCD3-220ENST00000627371 SPINK1P00995 79 aa11.67□□□□□ -0.54
PTCD3-220ENST00000627371 SNCGO76070 127 aa11.66□□□□□ -0.54
PTCD3-220ENST00000627371 PSMB2P49721 201 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 128.5 ms