RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 EIF4EBP3O60516 100 aaPredicted RBP8.56□□□□□ -1.04
LINC00643-206ENST00000623985 LINC00483Q53H64 154 aa8.56□□□□□ -1.04
LINC00643-206ENST00000623985 LITAFQ99732 161 aa8.56□□□□□ -1.04
LINC00643-206ENST00000623985 ZNF815PA8K554 130 aa8.55□□□□□ -1.04
LINC00643-206ENST00000623985 KRTDAPP60985 99 aa8.55□□□□□ -1.04
LINC00643-206ENST00000623985 SPAG11AQ6PDA7 123 aa8.55□□□□□ -1.04
LINC00643-206ENST00000623985 RETNLBQ9BQ08 111 aa8.55□□□□□ -1.04
LINC00643-206ENST00000623985 Q9BRP9 147 aa8.55□□□□□ -1.04
LINC00643-206ENST00000623985 SPANXCQ9NY87 97 aa8.55□□□□□ -1.04
LINC00643-206ENST00000623985 LINC00308Q8TCZ7 52 aa8.54□□□□□ -1.04
LINC00643-206ENST00000623985 CBY1Q9Y3M2 126 aa8.54□□□□□ -1.04
LINC00643-206ENST00000623985 C20orf202A1L168 122 aa8.53□□□□□ -1.04
LINC00643-206ENST00000623985 AKR1D1P51857 326 aa8.53□□□□□ -1.04
LINC00643-206ENST00000623985 JOSD1Q15040 202 aaPredicted RBP8.53□□□□□ -1.04
LINC00643-206ENST00000623985 PPDPFQ9H3Y8 114 aa8.53□□□□□ -1.04
LINC00643-206ENST00000623985 ZNF73O43830 326 aaPredicted RBP8.52□□□□□ -1.05
LINC00643-206ENST00000623985 ERC2-IT1O76042 136 aa8.52□□□□□ -1.05
LINC00643-206ENST00000623985 Q8NBF4 154 aa8.52□□□□□ -1.05
LINC00643-206ENST00000623985 GAGE2AQ6NT46 116 aa8.51□□□□□ -1.05
LINC00643-206ENST00000623985 TTTY13Q9BZ97 58 aa8.51□□□□□ -1.05
LINC00643-206ENST00000623985 C4orf48Q5BLP8 95 aa8.5□□□□□ -1.05
LINC00643-206ENST00000623985 TPRXLQ17RH7 258 aa8.49□□□□□ -1.05
LINC00643-206ENST00000623985 HINT1P49773 126 aaPredicted RBP8.48□□□□□ -1.05
LINC00643-206ENST00000623985 SCGB1D4Q6XE38 83 aa8.48□□□□□ -1.05
LINC00643-206ENST00000623985 SPANXDQ9BXN6 97 aa8.48□□□□□ -1.05
LINC00643-206ENST00000623985 IGLV9-49A0A0B4J1Y8 123 aa8.47□□□□□ -1.05
LINC00643-206ENST00000623985 MOBPQ13875 183 aa8.47□□□□□ -1.05
LINC00643-206ENST00000623985 ANKRD39Q53RE8 183 aa8.47□□□□□ -1.05
LINC00643-206ENST00000623985 OR13C6PQ8NH95 151 aa8.47□□□□□ -1.05
LINC00643-206ENST00000623985 IGLV7-46A0A075B6I9 117 aa8.46□□□□□ -1.06
LINC00643-206ENST00000623985 C5orf52A6NGY3 159 aa8.46□□□□□ -1.06
LINC00643-206ENST00000623985 SPINK1P00995 79 aa8.46□□□□□ -1.06
LINC00643-206ENST00000623985 LINC00518Q8N0U6 118 aa8.46□□□□□ -1.06
LINC00643-206ENST00000623985 HIST3H2BBQ8N257 126 aa8.46□□□□□ -1.06
LINC00643-206ENST00000623985 COPS9Q8WXC6 57 aa8.46□□□□□ -1.06
LINC00643-206ENST00000623985 SMCPP49901 116 aaPredicted RBP8.45□□□□□ -1.06
LINC00643-206ENST00000623985 FP248Q71RG6 208 aaPredicted RBP8.45□□□□□ -1.06
LINC00643-206ENST00000623985 SSBP3-AS1Q7Z2R9 100 aa8.45□□□□□ -1.06
LINC00643-206ENST00000623985 ATOH7Q8N100 152 aa8.45□□□□□ -1.06
LINC00643-206ENST00000623985 MUC2Q02817 5179 aa8.45□□□□□ -1.06
LINC00643-206ENST00000623985 RPS29P62273 56 aaKnown RBP8.44□□□□□ -1.06
LINC00643-206ENST00000623985 SNRPEP62304 92 aaKnown RBP8.44□□□□□ -1.06
LINC00643-206ENST00000623985 S100A6P06703 90 aa8.43□□□□□ -1.06
LINC00643-206ENST00000623985 Q6ZVH6 145 aa8.43□□□□□ -1.06
LINC00643-206ENST00000623985 HIST1H2BLQ99880 126 aa8.43□□□□□ -1.06
LINC00643-206ENST00000623985 CDIP1Q9H305 208 aa8.43□□□□□ -1.06
LINC00643-206ENST00000623985 IFITM1P13164 125 aa8.42□□□□□ -1.06
LINC00643-206ENST00000623985 S100A2P29034 98 aa8.42□□□□□ -1.06
LINC00643-206ENST00000623985 ELOF1P60002 83 aaKnown RBP8.42□□□□□ -1.06
LINC00643-206ENST00000623985 C9orf153Q5TBE3 101 aa8.42□□□□□ -1.06
LINC00643-206ENST00000623985 ST20-AS1Q8NBB2 130 aa8.42□□□□□ -1.06
LINC00643-206ENST00000623985 DHRS4-AS1Q9P1J3 65 aa8.42□□□□□ -1.06
LINC00643-206ENST00000623985 C6orf99Q4VX62 202 aa8.4□□□□□ -1.06
LINC00643-206ENST00000623985 PCP2Q8IVA1 136 aa8.4□□□□□ -1.06
LINC00643-206ENST00000623985 SPRR1BP22528 89 aa8.39□□□□□ -1.07
LINC00643-206ENST00000623985 COX7BP24311 80 aa8.39□□□□□ -1.07
LINC00643-206ENST00000623985 SLC25A34Q6PIV7 304 aa8.38□□□□□ -1.07
LINC00643-206ENST00000623985 Q8N377 158 aa8.38□□□□□ -1.07
LINC00643-206ENST00000623985 MUC17Q685J3 4493 aa8.38□□□□□ -1.07
LINC00643-206ENST00000623985 TRBV7-6A0A0J9YX20 115 aa8.37□□□□□ -1.07
LINC00643-206ENST00000623985 A0A0U1RQV1 116 aa8.37□□□□□ -1.07
LINC00643-206ENST00000623985 MUSTN1Q8IVN3 82 aa8.36□□□□□ -1.07
LINC00643-206ENST00000623985 HSBP1L1C9JCN9 74 aa8.35□□□□□ -1.07
LINC00643-206ENST00000623985 SLC25A20O43772 301 aa8.35□□□□□ -1.07
LINC00643-206ENST00000623985 KRTAP13-3Q3SY46 172 aa8.35□□□□□ -1.07
LINC00643-206ENST00000623985 A0A1B0GWB2 263 aa8.34□□□□□ -1.07
LINC00643-206ENST00000623985 A6NDN8 102 aa8.34□□□□□ -1.07
LINC00643-206ENST00000623985 TRAV13-2A0A0B4J235 113 aa8.33□□□□□ -1.08
LINC00643-206ENST00000623985 LAMTOR3Q9UHA4 124 aa8.33□□□□□ -1.08
LINC00643-206ENST00000623985 TEX49A0A1B0GTD5 131 aa8.3□□□□□ -1.08
LINC00643-206ENST00000623985 A4D1N5 150 aa8.3□□□□□ -1.08
LINC00643-206ENST00000623985 TAL2Q16559 108 aa8.3□□□□□ -1.08
LINC00643-206ENST00000623985 LCE2AQ5TA79 106 aaPredicted RBP8.3□□□□□ -1.08
LINC00643-206ENST00000623985 LIMD2Q9BT23 127 aa8.3□□□□□ -1.08
LINC00643-206ENST00000623985 IGLV5-48A0A075B6I7 105 aa8.28□□□□□ -1.08
LINC00643-206ENST00000623985 Q1RN00 199 aa8.28□□□□□ -1.08
LINC00643-206ENST00000623985 DEFB105AQ8NG35 78 aa8.28□□□□□ -1.08
LINC00643-206ENST00000623985 SMIM11BQ8TCY0 68 aa8.28□□□□□ -1.08
LINC00643-206ENST00000623985 NHP2Q9NX24 153 aaKnown RBP8.28□□□□□ -1.08
LINC00643-206ENST00000623985 SCGB1D1O95968 90 aa8.27□□□□□ -1.09
LINC00643-206ENST00000623985 LINC01547P58512 204 aaPredicted RBP8.26□□□□□ -1.09
LINC00643-206ENST00000623985 CD164Q04900 197 aa8.25□□□□□ -1.09
LINC00643-206ENST00000623985 HRCT1Q6UXD1 115 aa8.25□□□□□ -1.09
LINC00643-206ENST00000623985 PRO1933Q9H354 126 aa8.25□□□□□ -1.09
LINC00643-206ENST00000623985 SMIM29Q86T20 159 aa8.24□□□□□ -1.09
LINC00643-206ENST00000623985 FAT4Q6V0I7 4981 aa8.24□□□□□ -1.09
LINC00643-206ENST00000623985 DLEU1O43261 78 aa8.23□□□□□ -1.09
LINC00643-206ENST00000623985 ASB16-AS1Q495Z4 193 aa8.23□□□□□ -1.09
LINC00643-206ENST00000623985 COX8AP10176 69 aa8.22□□□□□ -1.09
LINC00643-206ENST00000623985 VAMP3Q15836 100 aa8.22□□□□□ -1.09
LINC00643-206ENST00000623985 H7C2G1 150 aa8.2□□□□□ -1.1
LINC00643-206ENST00000623985 SEC61BP60468 96 aaKnown RBP8.2□□□□□ -1.1
LINC00643-206ENST00000623985 LCE2CQ5TA81 110 aa8.2□□□□□ -1.1
LINC00643-206ENST00000623985 HIST1H4GQ99525 98 aa8.2□□□□□ -1.1
LINC00643-206ENST00000623985 XP32Q5T750 250 aa8.19□□□□□ -1.1
LINC00643-206ENST00000623985 LINC00575Q6W349 94 aa8.19□□□□□ -1.1
LINC00643-206ENST00000623985 Q5XG85 94 aa8.18□□□□□ -1.1
LINC00643-206ENST00000623985 hADV29S1A0JD25 119 aa8.17□□□□□ -1.1
LINC00643-206ENST00000623985 C12orf57Q99622 126 aa8.17□□□□□ -1.1
LINC00643-206ENST00000623985 F8WEM9 126 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms