RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 Q8N1X5 172 aa3.44□□□□□ -1.86
SHMT1-211ENST00000618902 MIR7-3HGQ8N6C7 128 aa3.44□□□□□ -1.86
SHMT1-211ENST00000618902 OBSCN-AS1Q96MR7 158 aa3.44□□□□□ -1.86
SHMT1-211ENST00000618902 IGKV2D-24A0A075B6R9 120 aa3.43□□□□□ -1.86
SHMT1-211ENST00000618902 IGKV3OR2-268A0A0C4DH90 116 aa3.43□□□□□ -1.86
SHMT1-211ENST00000618902 TRBV10-3A0A0K0K1G6 114 aa3.43□□□□□ -1.86
SHMT1-211ENST00000618902 REG3AQ06141 175 aa3.43□□□□□ -1.86
SHMT1-211ENST00000618902 ATP5EP2Q5VTU8 51 aa3.43□□□□□ -1.86
SHMT1-211ENST00000618902 SOSTDC1Q6X4U4 206 aa3.43□□□□□ -1.86
SHMT1-211ENST00000618902 Q6ZSA8 131 aa3.43□□□□□ -1.86
SHMT1-211ENST00000618902 C5orf38Q86SI9 138 aa3.43□□□□□ -1.86
SHMT1-211ENST00000618902 CLEC2BQ92478 149 aa3.43□□□□□ -1.86
SHMT1-211ENST00000618902 KRTAP17-1Q9BYP8 105 aa3.43□□□□□ -1.86
SHMT1-211ENST00000618902 ORMDL1Q9P0S3 153 aa3.43□□□□□ -1.86
SHMT1-211ENST00000618902 HERC1Q15751 4861 aa3.43□□□□□ -1.86
SHMT1-211ENST00000618902 H3BS24 57 aa3.42□□□□□ -1.86
SHMT1-211ENST00000618902 UQCRQO14949 82 aa3.42□□□□□ -1.86
SHMT1-211ENST00000618902 NPC2P61916 151 aa3.42□□□□□ -1.86
SHMT1-211ENST00000618902 CNBPP62633 177 aaKnown RBP3.42□□□□□ -1.86
SHMT1-211ENST00000618902 LCE2AQ5TA79 106 aaPredicted RBP3.42□□□□□ -1.86
SHMT1-211ENST00000618902 SMIM11BQ8TCY0 68 aa3.42□□□□□ -1.86
SHMT1-211ENST00000618902 CHCHD10Q8WYQ3 142 aaPredicted RBP3.42□□□□□ -1.86
SHMT1-211ENST00000618902 LINC00167Q96N53 147 aa3.42□□□□□ -1.86
SHMT1-211ENST00000618902 PKHD1L1Q86WI1 4243 aa3.41□□□□□ -1.86
SHMT1-211ENST00000618902 IGKV2-28A0A075B6P5 120 aa3.41□□□□□ -1.86
SHMT1-211ENST00000618902 GVQW2A0A096LPI5 108 aaPredicted RBP3.41□□□□□ -1.86
SHMT1-211ENST00000618902 TRBV7-6A0A0J9YX20 115 aa3.41□□□□□ -1.86
SHMT1-211ENST00000618902 USP17L23D6RBM5 183 aa3.41□□□□□ -1.86
SHMT1-211ENST00000618902 ATOX1O00244 68 aa3.41□□□□□ -1.86
SHMT1-211ENST00000618902 IGKV2D-28P01615 120 aa3.41□□□□□ -1.86
SHMT1-211ENST00000618902 SLPIP03973 132 aa3.41□□□□□ -1.86
SHMT1-211ENST00000618902 KRTAP10-1P60331 282 aa3.41□□□□□ -1.86
SHMT1-211ENST00000618902 C15orf56Q8N910 161 aa3.41□□□□□ -1.86
SHMT1-211ENST00000618902 TOMM7Q9P0U1 55 aa3.41□□□□□ -1.86
SHMT1-211ENST00000618902 LINC00474Q9P2X8 69 aa3.41□□□□□ -1.86
SHMT1-211ENST00000618902 EPM2AB3EWF7 344 aa3.4□□□□□ -1.87
SHMT1-211ENST00000618902 PLA2G1BP04054 148 aaKnown RBP3.4□□□□□ -1.87
SHMT1-211ENST00000618902 CCKP06307 115 aa3.4□□□□□ -1.87
SHMT1-211ENST00000618902 XCL1P47992 114 aa3.4□□□□□ -1.87
SHMT1-211ENST00000618902 Q6JHZ5 121 aa3.4□□□□□ -1.87
SHMT1-211ENST00000618902 SMIM20Q8N5G0 67 aa3.4□□□□□ -1.87
SHMT1-211ENST00000618902 C3orf22Q8N5N4 141 aa3.4□□□□□ -1.87
SHMT1-211ENST00000618902 LINC00337Q8N6G1 96 aa3.4□□□□□ -1.87
SHMT1-211ENST00000618902 C9orf163Q8N9P6 203 aa3.4□□□□□ -1.87
SHMT1-211ENST00000618902 OR13C6PQ8NH95 151 aa3.4□□□□□ -1.87
SHMT1-211ENST00000618902 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.39□□□□□ -1.87
SHMT1-211ENST00000618902 A0A0U1RRA0 63 aa3.39□□□□□ -1.87
SHMT1-211ENST00000618902 A0A1B0GW54 56 aa3.39□□□□□ -1.87
SHMT1-211ENST00000618902 RPS28P62857 69 aaKnown RBP3.39□□□□□ -1.87
SHMT1-211ENST00000618902 KIAA0087Q14695 138 aa3.39□□□□□ -1.87
SHMT1-211ENST00000618902 LINC00526Q96FQ7 95 aa3.39□□□□□ -1.87
SHMT1-211ENST00000618902 FAM30AQ9NZY2 134 aa3.39□□□□□ -1.87
SHMT1-211ENST00000618902 FAT3Q8TDW7 4589 aa3.38□□□□□ -1.87
SHMT1-211ENST00000618902 B5MCH6 92 aa3.38□□□□□ -1.87
SHMT1-211ENST00000618902 COX7CP15954 63 aa3.38□□□□□ -1.87
SHMT1-211ENST00000618902 PFN2P35080 140 aa3.38□□□□□ -1.87
SHMT1-211ENST00000618902 HIST1H4AP62805 103 aaKnown RBP3.38□□□□□ -1.87
SHMT1-211ENST00000618902 HIGD2BQ4VC39 106 aa3.38□□□□□ -1.87
SHMT1-211ENST00000618902 GAGE2AQ6NT46 116 aa3.38□□□□□ -1.87
SHMT1-211ENST00000618902 UBL5Q9BZL1 73 aa3.38□□□□□ -1.87
SHMT1-211ENST00000618902 FLG2Q5D862 2391 aaPredicted RBP3.37□□□□□ -1.87
SHMT1-211ENST00000618902 LOC110117498A0A087WWA1 95 aa3.37□□□□□ -1.87
SHMT1-211ENST00000618902 hADV29S1A0JD25 119 aa3.37□□□□□ -1.87
SHMT1-211ENST00000618902 PANO1I0J062 215 aa3.37□□□□□ -1.87
SHMT1-211ENST00000618902 CRYGAP11844 174 aa3.37□□□□□ -1.87
SHMT1-211ENST00000618902 HAMPP81172 84 aa3.37□□□□□ -1.87
SHMT1-211ENST00000618902 RBM3P98179 157 aaKnown RBP3.37□□□□□ -1.87
SHMT1-211ENST00000618902 LINC00575Q6W349 94 aa3.37□□□□□ -1.87
SHMT1-211ENST00000618902 FAM218AQ96MZ4 157 aa3.37□□□□□ -1.87
SHMT1-211ENST00000618902 C22orf24Q9Y442 160 aa3.37□□□□□ -1.87
SHMT1-211ENST00000618902 FAM236AA0A1B0GUQ0 79 aa3.36□□□□□ -1.87
SHMT1-211ENST00000618902 FAM236BA0A1B0GV22 79 aa3.36□□□□□ -1.87
SHMT1-211ENST00000618902 NDUFC2-KCTD14E9PQ53 114 aa3.36□□□□□ -1.87
SHMT1-211ENST00000618902 RPL18AQ02543 176 aaKnown RBP3.36□□□□□ -1.87
SHMT1-211ENST00000618902 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.36□□□□□ -1.87
SHMT1-211ENST00000618902 SERP2Q8N6R1 65 aa3.36□□□□□ -1.87
SHMT1-211ENST00000618902 C2orf48Q96LS8 159 aa3.36□□□□□ -1.87
SHMT1-211ENST00000618902 LRP1Q07954 4544 aaKnown RBP3.36□□□□□ -1.87
SHMT1-211ENST00000618902 A0A087WYN8 130 aa3.35□□□□□ -1.87
SHMT1-211ENST00000618902 IGLV6-57P01721 117 aa3.35□□□□□ -1.87
SHMT1-211ENST00000618902 LORP23490 312 aaPredicted RBP3.35□□□□□ -1.87
SHMT1-211ENST00000618902 C10orf25Q5T742 122 aa3.35□□□□□ -1.87
SHMT1-211ENST00000618902 C9orf153Q5TBE3 101 aa3.35□□□□□ -1.87
SHMT1-211ENST00000618902 Q5VSD8 79 aa3.35□□□□□ -1.87
SHMT1-211ENST00000618902 DSCR8Q96T75 97 aa3.35□□□□□ -1.87
SHMT1-211ENST00000618902 KRTAP4-5Q9BYR2 181 aa3.35□□□□□ -1.87
SHMT1-211ENST00000618902 CCDC179H3BU77 68 aa3.34□□□□□ -1.87
SHMT1-211ENST00000618902 CXCL6P80162 114 aa3.34□□□□□ -1.87
SHMT1-211ENST00000618902 Q6ZRU5 148 aa3.34□□□□□ -1.87
SHMT1-211ENST00000618902 CIRBP-AS1Q8TBR5 109 aa3.34□□□□□ -1.87
SHMT1-211ENST00000618902 SMCR5Q8TEV8 140 aa3.34□□□□□ -1.87
SHMT1-211ENST00000618902 C14orf132Q9NPU4 83 aa3.34□□□□□ -1.87
SHMT1-211ENST00000618902 LINC00846Q9NV44 126 aa3.34□□□□□ -1.87
SHMT1-211ENST00000618902 PLAC8Q9NZF1 115 aa3.34□□□□□ -1.87
SHMT1-211ENST00000618902 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.34□□□□□ -1.87
SHMT1-211ENST00000618902 LOC107984640A0A0U1RRK4 108 aa3.33□□□□□ -1.88
SHMT1-211ENST00000618902 OXTP01178 125 aa3.33□□□□□ -1.88
SHMT1-211ENST00000618902 CHTF8P0CG12 524 aa3.33□□□□□ -1.88
SHMT1-211ENST00000618902 TMEM258P61165 79 aa3.33□□□□□ -1.88
SHMT1-211ENST00000618902 SPAG11BQ08648 103 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms