RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 H7BZZ5 65 aa8.44□□□□□ -1.06
LIG1-221ENST00000613670 NOTCH1P46531 2555 aa8.43□□□□□ -1.06
LIG1-221ENST00000613670 C1orf137Q5JT78 98 aa8.43□□□□□ -1.06
LIG1-221ENST00000613670 PRYO14603 147 aa8.42□□□□□ -1.06
LIG1-221ENST00000613670 WFDC13Q8IUB5 93 aa8.42□□□□□ -1.06
LIG1-221ENST00000613670 VPREB1P12018 145 aa8.42□□□□□ -1.06
LIG1-221ENST00000613670 MAST4O15021 2626 aa8.42□□□□□ -1.06
LIG1-221ENST00000613670 DEFB116Q30KQ4 102 aa8.42□□□□□ -1.06
LIG1-221ENST00000613670 OXTP01178 125 aa8.41□□□□□ -1.06
LIG1-221ENST00000613670 C7orf33Q8WU49 177 aa8.4□□□□□ -1.06
LIG1-221ENST00000613670 LINC00474Q9P2X8 69 aa8.4□□□□□ -1.06
LIG1-221ENST00000613670 ZFHX3Q15911 3703 aa8.4□□□□□ -1.06
LIG1-221ENST00000613670 ESRGQ1W209 222 aa8.4□□□□□ -1.06
LIG1-221ENST00000613670 UBE2DNLQ8IWF7 75 aa8.4□□□□□ -1.06
LIG1-221ENST00000613670 Q6ZRP5 223 aa8.39□□□□□ -1.07
LIG1-221ENST00000613670 MGAM2Q2M2H8 2515 aa8.39□□□□□ -1.07
LIG1-221ENST00000613670 SMIM29Q86T20 159 aa8.38□□□□□ -1.07
LIG1-221ENST00000613670 DHRS4-AS1Q9P1J3 65 aa8.38□□□□□ -1.07
LIG1-221ENST00000613670 PRR34Q9NV39 138 aa8.38□□□□□ -1.07
LIG1-221ENST00000613670 ATP5EP56381 51 aaPredicted RBP8.38□□□□□ -1.07
LIG1-221ENST00000613670 TRBV7-4A0A0J9YYF1 115 aa8.37□□□□□ -1.07
LIG1-221ENST00000613670 BCE1O60756 84 aa8.37□□□□□ -1.07
LIG1-221ENST00000613670 MP68P56378 58 aa8.37□□□□□ -1.07
LIG1-221ENST00000613670 KLKP1Q107X0 134 aa8.37□□□□□ -1.07
LIG1-221ENST00000613670 GVQW2A0A096LPI5 108 aaPredicted RBP8.37□□□□□ -1.07
LIG1-221ENST00000613670 KRTAP1-1Q07627 177 aa8.37□□□□□ -1.07
LIG1-221ENST00000613670 VPS13CQ709C8 3753 aa8.37□□□□□ -1.07
LIG1-221ENST00000613670 ST20-AS1Q8NBB2 130 aa8.36□□□□□ -1.07
LIG1-221ENST00000613670 HIVEP1P15822 2718 aa8.36□□□□□ -1.07
LIG1-221ENST00000613670 LINC00528Q8N1L1 170 aa8.36□□□□□ -1.07
LIG1-221ENST00000613670 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.35□□□□□ -1.07
LIG1-221ENST00000613670 LINC00336Q6ZUF6 198 aa8.35□□□□□ -1.07
LIG1-221ENST00000613670 BAHCC1Q9P281 2608 aa8.35□□□□□ -1.07
LIG1-221ENST00000613670 SERTAD4-AS1Q5TG53 156 aa8.34□□□□□ -1.07
LIG1-221ENST00000613670 FAM168BA1KXE4 195 aa8.33□□□□□ -1.08
LIG1-221ENST00000613670 UBE2AP49459 152 aa8.32□□□□□ -1.08
LIG1-221ENST00000613670 PRO0628Q9UI54 55 aa8.32□□□□□ -1.08
LIG1-221ENST00000613670 C15orf56Q8N910 161 aa8.32□□□□□ -1.08
LIG1-221ENST00000613670 H0Y9J4 135 aa8.31□□□□□ -1.08
LIG1-221ENST00000613670 Q5XG85 94 aa8.31□□□□□ -1.08
LIG1-221ENST00000613670 A0A0G2JQZ4 141 aa8.31□□□□□ -1.08
LIG1-221ENST00000613670 A0A1W2PNN7 141 aa8.31□□□□□ -1.08
LIG1-221ENST00000613670 NBEAL1Q6ZS30 2694 aa8.3□□□□□ -1.08
LIG1-221ENST00000613670 A0A087WSZ3 146 aa8.3□□□□□ -1.08
LIG1-221ENST00000613670 PSPHP1O15172 72 aa8.3□□□□□ -1.08
LIG1-221ENST00000613670 IGKV4-1P06312 121 aa8.3□□□□□ -1.08
LIG1-221ENST00000613670 PRLHP81277 87 aa8.3□□□□□ -1.08
LIG1-221ENST00000613670 STAB1Q9NY15 2570 aa8.3□□□□□ -1.08
LIG1-221ENST00000613670 Q8N377 158 aa8.3□□□□□ -1.08
LIG1-221ENST00000613670 MRPL55Q7Z7F7 128 aaKnown RBP8.29□□□□□ -1.08
LIG1-221ENST00000613670 LINC00208Q96KT6 92 aa8.29□□□□□ -1.08
LIG1-221ENST00000613670 NDUFS5O43920 106 aa8.28□□□□□ -1.08
LIG1-221ENST00000613670 LINC01556Q5JQF7 62 aa8.27□□□□□ -1.08
LIG1-221ENST00000613670 Q6ZRX8 168 aa8.27□□□□□ -1.08
LIG1-221ENST00000613670 COL6A5A8TX70 2615 aa8.27□□□□□ -1.09
LIG1-221ENST00000613670 REG3GQ6UW15 175 aa8.26□□□□□ -1.09
LIG1-221ENST00000613670 Q8NBF4 154 aa8.26□□□□□ -1.09
LIG1-221ENST00000613670 C1orf195Q5TG92 126 aa8.25□□□□□ -1.09
LIG1-221ENST00000613670 K7EQZ3 153 aa8.24□□□□□ -1.09
LIG1-221ENST00000613670 CDK2AP2O75956 126 aa8.24□□□□□ -1.09
LIG1-221ENST00000613670 KCNQ1DNQ9H478 68 aa8.24□□□□□ -1.09
LIG1-221ENST00000613670 HCG22E2RYF7 251 aa8.23□□□□□ -1.09
LIG1-221ENST00000613670 A0A1W2PNM2 257 aa8.22□□□□□ -1.09
LIG1-221ENST00000613670 LINC00476Q8WZB0 136 aa8.22□□□□□ -1.09
LIG1-221ENST00000613670 VWFP04275 2813 aa8.22□□□□□ -1.09
LIG1-221ENST00000613670 NDUFB1O75438 58 aa8.22□□□□□ -1.09
LIG1-221ENST00000613670 ERC2-IT1O76042 136 aa8.21□□□□□ -1.09
LIG1-221ENST00000613670 CASC10Q5T4H9 136 aa8.21□□□□□ -1.09
LIG1-221ENST00000613670 RPL37AP61513 92 aaKnown RBP8.21□□□□□ -1.1
LIG1-221ENST00000613670 FP248Q71RG6 208 aaPredicted RBP8.21□□□□□ -1.1
LIG1-221ENST00000613670 SPTSSBQ8NFR3 76 aa8.2□□□□□ -1.1
LIG1-221ENST00000613670 Q9BRP9 147 aa8.2□□□□□ -1.1
LIG1-221ENST00000613670 H3BNG1 76 aa8.2□□□□□ -1.1
LIG1-221ENST00000613670 OCR1Q9BZK8 76 aa8.19□□□□□ -1.1
LIG1-221ENST00000613670 V9GYY9 64 aa8.18□□□□□ -1.1
LIG1-221ENST00000613670 IGLV1-50A0A075B6I6 118 aa8.18□□□□□ -1.1
LIG1-221ENST00000613670 NSD1Q96L73 2696 aaPredicted RBP8.18□□□□□ -1.1
LIG1-221ENST00000613670 LINC00588Q9Y4M8 146 aa8.18□□□□□ -1.1
LIG1-221ENST00000613670 F8WDY8 70 aa8.17□□□□□ -1.1
LIG1-221ENST00000613670 FAM229BQ4G0N7 80 aa8.17□□□□□ -1.1
LIG1-221ENST00000613670 CASC2Q6XLA1 102 aa8.17□□□□□ -1.1
LIG1-221ENST00000613670 KRTAP10-11P60412 298 aa8.16□□□□□ -1.1
LIG1-221ENST00000613670 B9D2Q9BPU9 175 aa8.16□□□□□ -1.1
LIG1-221ENST00000613670 EPM2AB3EWF7 344 aa8.16□□□□□ -1.1
LIG1-221ENST00000613670 IGLV9-49A0A0B4J1Y8 123 aa8.15□□□□□ -1.1
LIG1-221ENST00000613670 H0Y9P7 68 aa8.15□□□□□ -1.1
LIG1-221ENST00000613670 CHKB-CPT1BH3BT56 60 aa8.15□□□□□ -1.11
LIG1-221ENST00000613670 C1orf64Q8NEQ6 169 aa8.14□□□□□ -1.11
LIG1-221ENST00000613670 IGLV5-48A0A075B6I7 105 aa8.14□□□□□ -1.11
LIG1-221ENST00000613670 PCOTHQ58A44 107 aa8.13□□□□□ -1.11
LIG1-221ENST00000613670 WIPF1O43516 503 aa8.13□□□□□ -1.11
LIG1-221ENST00000613670 DNAH10OSP0CZ25 163 aa8.13□□□□□ -1.11
LIG1-221ENST00000613670 TENM1Q9UKZ4 2725 aa8.13□□□□□ -1.11
LIG1-221ENST00000613670 CHTF8P0CG12 524 aa8.12□□□□□ -1.11
LIG1-221ENST00000613670 IGFL1Q6UW32 110 aa8.11□□□□□ -1.11
LIG1-221ENST00000613670 PHF5AQ7RTV0 110 aaKnown RBP8.1□□□□□ -1.11
LIG1-221ENST00000613670 PRR15LQ9BU68 103 aa8.1□□□□□ -1.11
LIG1-221ENST00000613670 A0A1B0GW54 56 aa8.1□□□□□ -1.11
LIG1-221ENST00000613670 KRTAP26-1Q6PEX3 210 aa8.1□□□□□ -1.11
LIG1-221ENST00000613670 DSCR10P59022 87 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms