RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 LST1O00453 97 aa8.98□□□□□ -0.97
USP39-220ENST00000613444 LINC00336Q6ZUF6 198 aa8.98□□□□□ -0.97
USP39-220ENST00000613444 ZNF73O43830 326 aaPredicted RBP8.97□□□□□ -0.97
USP39-220ENST00000613444 H0YGX0 51 aa8.97□□□□□ -0.97
USP39-220ENST00000613444 ATXN8Q156A1 80 aa8.96□□□□□ -0.97
USP39-220ENST00000613444 A0A087WYN8 130 aa8.96□□□□□ -0.98
USP39-220ENST00000613444 PHF5AQ7RTV0 110 aaKnown RBP8.96□□□□□ -0.98
USP39-220ENST00000613444 DIRC1Q969H9 104 aa8.95□□□□□ -0.98
USP39-220ENST00000613444 SPRR1AP35321 89 aa8.95□□□□□ -0.98
USP39-220ENST00000613444 KRTAP11-1Q8IUC1 163 aa8.95□□□□□ -0.98
USP39-220ENST00000613444 PRO0461Q9UI25 63 aa8.95□□□□□ -0.98
USP39-220ENST00000613444 CBY1Q9Y3M2 126 aa8.95□□□□□ -0.98
USP39-220ENST00000613444 A0A1B0GVY2 172 aa8.94□□□□□ -0.98
USP39-220ENST00000613444 KRTAP4-16G5E9R7 235 aaPredicted RBP8.94□□□□□ -0.98
USP39-220ENST00000613444 PRYO14603 147 aa8.94□□□□□ -0.98
USP39-220ENST00000613444 TRBV7-6A0A0J9YX20 115 aa8.93□□□□□ -0.98
USP39-220ENST00000613444 KRTAP10-1P60331 282 aa8.93□□□□□ -0.98
USP39-220ENST00000613444 PLAC8Q9NZF1 115 aa8.93□□□□□ -0.98
USP39-220ENST00000613444 FAM30AQ9NZY2 134 aa8.93□□□□□ -0.98
USP39-220ENST00000613444 LRP1BQ9NZR2 4599 aa8.93□□□□□ -0.98
USP39-220ENST00000613444 DPH3Q96FX2 82 aa8.93□□□□□ -0.98
USP39-220ENST00000613444 ELOF1P60002 83 aaKnown RBP8.92□□□□□ -0.98
USP39-220ENST00000613444 Q6ZSA8 131 aa8.92□□□□□ -0.98
USP39-220ENST00000613444 MTURNQ8N3F0 131 aa8.92□□□□□ -0.98
USP39-220ENST00000613444 TRACP01848 142 aa8.92□□□□□ -0.98
USP39-220ENST00000613444 LINC00575Q6W349 94 aa8.91□□□□□ -0.98
USP39-220ENST00000613444 DYNC1H1Q14204 4646 aaKnown RBP8.91□□□□□ -0.98
USP39-220ENST00000613444 COX7BP24311 80 aa8.9□□□□□ -0.98
USP39-220ENST00000613444 SMCPP49901 116 aaPredicted RBP8.9□□□□□ -0.98
USP39-220ENST00000613444 LINC00528Q8N1L1 170 aa8.9□□□□□ -0.98
USP39-220ENST00000613444 C9JAW5 83 aa8.89□□□□□ -0.99
USP39-220ENST00000613444 REG3GQ6UW15 175 aa8.89□□□□□ -0.99
USP39-220ENST00000613444 A0A1B0GX51 115 aa8.89□□□□□ -0.99
USP39-220ENST00000613444 B5MCH6 92 aa8.88□□□□□ -0.99
USP39-220ENST00000613444 F8W1H4 67 aa8.88□□□□□ -0.99
USP39-220ENST00000613444 UBE2BP63146 152 aa8.88□□□□□ -0.99
USP39-220ENST00000613444 SLC25A20O43772 301 aa8.86□□□□□ -0.99
USP39-220ENST00000613444 Q6ZRX8 168 aa8.86□□□□□ -0.99
USP39-220ENST00000613444 CIRBP-AS1Q8TBR5 109 aa8.86□□□□□ -0.99
USP39-220ENST00000613444 LINC01600Q96MT4 127 aa8.86□□□□□ -0.99
USP39-220ENST00000613444 hADV29S1A0JD25 119 aa8.86□□□□□ -0.99
USP39-220ENST00000613444 Q9BRP9 147 aa8.85□□□□□ -0.99
USP39-220ENST00000613444 ETDCA0A1B0GVM5 59 aa8.85□□□□□ -0.99
USP39-220ENST00000613444 SCXQ7RTU7 201 aa8.85□□□□□ -0.99
USP39-220ENST00000613444 DNAL4O96015 105 aa8.83□□□□□ -1
USP39-220ENST00000613444 ANKRD29Q8N6D5 301 aa8.83□□□□□ -1
USP39-220ENST00000613444 H3BT86 120 aa8.82□□□□□ -1
USP39-220ENST00000613444 INAFM2P0DMQ5 153 aa8.82□□□□□ -1
USP39-220ENST00000613444 APOBP04114 4563 aaKnown RBP8.82□□□□□ -1
USP39-220ENST00000613444 BAALC-AS2P0C853 105 aa8.81□□□□□ -1
USP39-220ENST00000613444 HAMPP81172 84 aa8.81□□□□□ -1
USP39-220ENST00000613444 PRLHP81277 87 aa8.8□□□□□ -1
USP39-220ENST00000613444 Q6ZQY7 126 aa8.8□□□□□ -1
USP39-220ENST00000613444 FAM19A1Q7Z5A9 133 aa8.8□□□□□ -1
USP39-220ENST00000613444 SRRM2Q9UQ35 2752 aaKnown RBP8.8□□□□□ -1
USP39-220ENST00000613444 BCE1O60756 84 aa8.8□□□□□ -1
USP39-220ENST00000613444 KRTAP13-1Q8IUC0 172 aa8.8□□□□□ -1
USP39-220ENST00000613444 SMCR5Q8TEV8 140 aa8.8□□□□□ -1
USP39-220ENST00000613444 DHRS4-AS1Q9P1J3 65 aa8.8□□□□□ -1
USP39-220ENST00000613444 PSORS1C2Q9UIG4 136 aa8.8□□□□□ -1
USP39-220ENST00000613444 H0Y9J4 135 aa8.79□□□□□ -1
USP39-220ENST00000613444 ERC2-IT1O76042 136 aa8.79□□□□□ -1
USP39-220ENST00000613444 SNCGO76070 127 aa8.79□□□□□ -1
USP39-220ENST00000613444 ETDBQ3ZM63 59 aa8.79□□□□□ -1
USP39-220ENST00000613444 ORMDL1Q9P0S3 153 aa8.79□□□□□ -1
USP39-220ENST00000613444 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.79□□□□□ -1
USP39-220ENST00000613444 VPS13BQ7Z7G8 4022 aa8.78□□□□□ -1
USP39-220ENST00000613444 TEN1Q86WV5 123 aa8.76□□□□□ -1.01
USP39-220ENST00000613444 LINC01547P58512 204 aaPredicted RBP8.75□□□□□ -1.01
USP39-220ENST00000613444 TMEM256-PLSCR3K7ERE1 68 aa8.74□□□□□ -1.01
USP39-220ENST00000613444 UBE2AP49459 152 aa8.74□□□□□ -1.01
USP39-220ENST00000613444 XGP55808 180 aa8.74□□□□□ -1.01
USP39-220ENST00000613444 ST20-AS1Q8NBB2 130 aa8.74□□□□□ -1.01
USP39-220ENST00000613444 OCIAD2Q56VL3 154 aa8.73□□□□□ -1.01
USP39-220ENST00000613444 C1orf137Q5JT78 98 aa8.73□□□□□ -1.01
USP39-220ENST00000613444 HIGD2AQ9BW72 106 aa8.73□□□□□ -1.01
USP39-220ENST00000613444 IGLV5-48A0A075B6I7 105 aa8.72□□□□□ -1.01
USP39-220ENST00000613444 TEX49A0A1B0GTD5 131 aa8.72□□□□□ -1.01
USP39-220ENST00000613444 Q8N377 158 aa8.72□□□□□ -1.01
USP39-220ENST00000613444 OBSCN-AS1Q96MR7 158 aa8.71□□□□□ -1.01
USP39-220ENST00000613444 H3BQ85 93 aa8.71□□□□□ -1.02
USP39-220ENST00000613444 ZNF861PO60384 105 aa8.69□□□□□ -1.02
USP39-220ENST00000613444 IGLV7-43P04211 117 aa8.69□□□□□ -1.02
USP39-220ENST00000613444 DEFB105AQ8NG35 78 aa8.69□□□□□ -1.02
USP39-220ENST00000613444 GHRHP01286 108 aa8.68□□□□□ -1.02
USP39-220ENST00000613444 PPDPFLQ8WWR9 84 aa8.68□□□□□ -1.02
USP39-220ENST00000613444 FAT1Q14517 4588 aa8.67□□□□□ -1.02
USP39-220ENST00000613444 EPPK1P58107 5090 aaKnown RBP8.66□□□□□ -1.02
USP39-220ENST00000613444 PCP4P48539 62 aa8.66□□□□□ -1.02
USP39-220ENST00000613444 NDUFV3P56181 108 aaKnown RBP8.65□□□□□ -1.02
USP39-220ENST00000613444 SMIM29Q86T20 159 aa8.65□□□□□ -1.02
USP39-220ENST00000613444 C3orf22Q8N5N4 141 aa8.65□□□□□ -1.03
USP39-220ENST00000613444 A0A1B0GV72 72 aa8.64□□□□□ -1.03
USP39-220ENST00000613444 SPRR1BP22528 89 aa8.64□□□□□ -1.03
USP39-220ENST00000613444 LAMTOR3Q9UHA4 124 aa8.64□□□□□ -1.03
USP39-220ENST00000613444 HSPG2P98160 4391 aa8.64□□□□□ -1.03
USP39-220ENST00000613444 JMJD7-PLA2G4BH0Y9G9 81 aa8.63□□□□□ -1.03
USP39-220ENST00000613444 C14orf132Q9NPU4 83 aa8.62□□□□□ -1.03
USP39-220ENST00000613444 SPRR4Q96PI1 79 aa8.62□□□□□ -1.03
USP39-220ENST00000613444 SMR3BP02814 79 aaPredicted RBP8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms