RNA–Protein interactions for RNA: ENST00000606213.5

PTPRN-219, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-219ENST00000606213 C3orf22Q8N5N4 141 aa13.68□□□□□ -0.22
PTPRN-219ENST00000606213 SPANXCQ9NY87 97 aa13.68□□□□□ -0.22
PTPRN-219ENST00000606213 JOSD1Q15040 202 aaPredicted RBP13.67□□□□□ -0.22
PTPRN-219ENST00000606213 OR13C6PQ8NH95 151 aa13.67□□□□□ -0.22
PTPRN-219ENST00000606213 LITAFQ99732 161 aa13.67□□□□□ -0.22
PTPRN-219ENST00000606213 TTTY13Q9BZ97 58 aa13.67□□□□□ -0.22
PTPRN-219ENST00000606213 PPDPFQ9H3Y8 114 aa13.67□□□□□ -0.22
PTPRN-219ENST00000606213 HINT1P49773 126 aaPredicted RBP13.66□□□□□ -0.22
PTPRN-219ENST00000606213 Q6ZRX8 168 aa13.66□□□□□ -0.22
PTPRN-219ENST00000606213 S100A2P29034 98 aa13.65□□□□□ -0.22
PTPRN-219ENST00000606213 ATOH7Q8N100 152 aa13.65□□□□□ -0.22
PTPRN-219ENST00000606213 ZNF73O43830 326 aaPredicted RBP13.64□□□□□ -0.23
PTPRN-219ENST00000606213 C4orf48Q5BLP8 95 aa13.64□□□□□ -0.23
PTPRN-219ENST00000606213 GAGE2AQ6NT46 116 aa13.64□□□□□ -0.23
PTPRN-219ENST00000606213 LPAP08519 4548 aa13.62□□□□□ -0.23
PTPRN-219ENST00000606213 ANKRD39Q53RE8 183 aa13.6□□□□□ -0.23
PTPRN-219ENST00000606213 SPAG11AQ6PDA7 123 aa13.6□□□□□ -0.23
PTPRN-219ENST00000606213 LINC00518Q8N0U6 118 aa13.6□□□□□ -0.23
PTPRN-219ENST00000606213 COPS9Q8WXC6 57 aa13.6□□□□□ -0.23
PTPRN-219ENST00000606213 Q9BRP9 147 aa13.6□□□□□ -0.23
PTPRN-219ENST00000606213 ERC2-IT1O76042 136 aa13.59□□□□□ -0.23
PTPRN-219ENST00000606213 S100A6P06703 90 aa13.59□□□□□ -0.23
PTPRN-219ENST00000606213 CTAG1AP78358 180 aa13.59□□□□□ -0.23
PTPRN-219ENST00000606213 RETNLBQ9BQ08 111 aa13.59□□□□□ -0.23
PTPRN-219ENST00000606213 SPANXDQ9BXN6 97 aa13.58□□□□□ -0.24
PTPRN-219ENST00000606213 LINC00483Q53H64 154 aa13.57□□□□□ -0.24
PTPRN-219ENST00000606213 SNRPEP62304 92 aaKnown RBP13.56□□□□□ -0.24
PTPRN-219ENST00000606213 HIST3H2BBQ8N257 126 aa13.56□□□□□ -0.24
PTPRN-219ENST00000606213 Q8NBF4 154 aa13.56□□□□□ -0.24
PTPRN-219ENST00000606213 IGLV9-49A0A0B4J1Y8 123 aa13.55□□□□□ -0.24
PTPRN-219ENST00000606213 HIST1H2BLQ99880 126 aa13.54□□□□□ -0.24
PTPRN-219ENST00000606213 HSBP1L1C9JCN9 74 aa13.53□□□□□ -0.24
PTPRN-219ENST00000606213 PCP2Q8IVA1 136 aa13.53□□□□□ -0.24
PTPRN-219ENST00000606213 IFITM1P13164 125 aa13.52□□□□□ -0.25
PTPRN-219ENST00000606213 Q6ZVH6 145 aa13.52□□□□□ -0.25
PTPRN-219ENST00000606213 MOBPQ13875 183 aa13.51□□□□□ -0.25
PTPRN-219ENST00000606213 DHRS4-AS1Q9P1J3 65 aa13.49□□□□□ -0.25
PTPRN-219ENST00000606213 IGLV7-46A0A075B6I9 117 aa13.47□□□□□ -0.25
PTPRN-219ENST00000606213 A6NDN8 102 aa13.47□□□□□ -0.25
PTPRN-219ENST00000606213 SSBP3-AS1Q7Z2R9 100 aa13.47□□□□□ -0.25
PTPRN-219ENST00000606213 C5orf52A6NGY3 159 aa13.46□□□□□ -0.25
PTPRN-219ENST00000606213 SPINK1P00995 79 aa13.46□□□□□ -0.25
PTPRN-219ENST00000606213 COX7BP24311 80 aa13.46□□□□□ -0.25
PTPRN-219ENST00000606213 C6orf99Q4VX62 202 aa13.46□□□□□ -0.25
PTPRN-219ENST00000606213 C9orf153Q5TBE3 101 aa13.46□□□□□ -0.25
PTPRN-219ENST00000606213 MUSTN1Q8IVN3 82 aa13.46□□□□□ -0.25
PTPRN-219ENST00000606213 ST20-AS1Q8NBB2 130 aa13.46□□□□□ -0.25
PTPRN-219ENST00000606213 ELOF1P60002 83 aaKnown RBP13.42□□□□□ -0.26
PTPRN-219ENST00000606213 SLC25A34Q6PIV7 304 aa13.42□□□□□ -0.26
PTPRN-219ENST00000606213 SCGB1D1O95968 90 aa13.41□□□□□ -0.26
PTPRN-219ENST00000606213 CDIP1Q9H305 208 aa13.41□□□□□ -0.26
PTPRN-219ENST00000606213 TRAV13-2A0A0B4J235 113 aa13.39□□□□□ -0.27
PTPRN-219ENST00000606213 TPRXLQ17RH7 258 aa13.38□□□□□ -0.27
PTPRN-219ENST00000606213 TRBV7-6A0A0J9YX20 115 aa13.37□□□□□ -0.27
PTPRN-219ENST00000606213 FP248Q71RG6 208 aaPredicted RBP13.37□□□□□ -0.27
PTPRN-219ENST00000606213 TAL2Q16559 108 aa13.36□□□□□ -0.27
PTPRN-219ENST00000606213 LAMTOR3Q9UHA4 124 aa13.36□□□□□ -0.27
PTPRN-219ENST00000606213 A0A1B0GWB2 263 aa13.35□□□□□ -0.27
PTPRN-219ENST00000606213 DEFB105AQ8NG35 78 aa13.34□□□□□ -0.27
PTPRN-219ENST00000606213 SPRR1BP22528 89 aa13.33□□□□□ -0.28
PTPRN-219ENST00000606213 RPS29P62273 56 aaKnown RBP13.33□□□□□ -0.28
PTPRN-219ENST00000606213 A4D1N5 150 aa13.31□□□□□ -0.28
PTPRN-219ENST00000606213 SLC25A20O43772 301 aa13.29□□□□□ -0.28
PTPRN-219ENST00000606213 NHP2Q9NX24 153 aaKnown RBP13.29□□□□□ -0.28
PTPRN-219ENST00000606213 TEX49A0A1B0GTD5 131 aa13.28□□□□□ -0.28
PTPRN-219ENST00000606213 SMIM11BQ8TCY0 68 aa13.28□□□□□ -0.28
PTPRN-219ENST00000606213 VAMP3Q15836 100 aa13.27□□□□□ -0.29
PTPRN-219ENST00000606213 Q1RN00 199 aa13.27□□□□□ -0.29
PTPRN-219ENST00000606213 Q8N377 158 aa13.27□□□□□ -0.29
PTPRN-219ENST00000606213 HIST1H4GQ99525 98 aa13.26□□□□□ -0.29
PTPRN-219ENST00000606213 MUC2Q02817 5179 aa13.25□□□□□ -0.29
PTPRN-219ENST00000606213 HRCT1Q6UXD1 115 aa13.23□□□□□ -0.29
PTPRN-219ENST00000606213 COX8AP10176 69 aa13.22□□□□□ -0.29
PTPRN-219ENST00000606213 LIMD2Q9BT23 127 aa13.21□□□□□ -0.29
PTPRN-219ENST00000606213 A0A0U1RQV1 116 aa13.2□□□□□ -0.3
PTPRN-219ENST00000606213 PRO1933Q9H354 126 aa13.2□□□□□ -0.3
PTPRN-219ENST00000606213 KRTAP13-3Q3SY46 172 aa13.18□□□□□ -0.3
PTPRN-219ENST00000606213 C12orf57Q99622 126 aa13.18□□□□□ -0.3
PTPRN-219ENST00000606213 IGLV5-48A0A075B6I7 105 aa13.17□□□□□ -0.3
PTPRN-219ENST00000606213 DLEU1O43261 78 aa13.17□□□□□ -0.3
PTPRN-219ENST00000606213 PAM16Q9Y3D7 125 aa13.17□□□□□ -0.3
PTPRN-219ENST00000606213 C14orf144Q96I85 54 aa13.16□□□□□ -0.3
PTPRN-219ENST00000606213 SPATA45Q537H7 98 aa13.15□□□□□ -0.3
PTPRN-219ENST00000606213 VAMP8Q9BV40 100 aa13.15□□□□□ -0.3
PTPRN-219ENST00000606213 H7C2G1 150 aa13.13□□□□□ -0.31
PTPRN-219ENST00000606213 LINC01547P58512 204 aaPredicted RBP13.13□□□□□ -0.31
PTPRN-219ENST00000606213 CD164Q04900 197 aa13.12□□□□□ -0.31
PTPRN-219ENST00000606213 LINC00575Q6W349 94 aa13.12□□□□□ -0.31
PTPRN-219ENST00000606213 SMIM29Q86T20 159 aa13.12□□□□□ -0.31
PTPRN-219ENST00000606213 hADV29S1A0JD25 119 aa13.11□□□□□ -0.31
PTPRN-219ENST00000606213 F8WEM9 126 aa13.11□□□□□ -0.31
PTPRN-219ENST00000606213 BVES-AS1Q5T3Y7 98 aa13.1□□□□□ -0.31
PTPRN-219ENST00000606213 RAB37Q96AX2 223 aa13.09□□□□□ -0.31
PTPRN-219ENST00000606213 Q6ZQY7 126 aa13.07□□□□□ -0.32
PTPRN-219ENST00000606213 HIGD1BQ9P298 99 aa13.07□□□□□ -0.32
PTPRN-219ENST00000606213 SNCGO76070 127 aa13.02□□□□□ -0.33
PTPRN-219ENST00000606213 CFC1BP0CG36 223 aa13.02□□□□□ -0.33
PTPRN-219ENST00000606213 CFC1P0CG37 223 aa13.02□□□□□ -0.33
PTPRN-219ENST00000606213 SEC61BP60468 96 aaKnown RBP13.02□□□□□ -0.33
PTPRN-219ENST00000606213 A0A0G2JQZ4 141 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms