RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 C20orf197Q8N268 126 aa13.19□□□□□ -0.3
SHKBP1-225ENST00000600733 C7orf33Q8WU49 177 aa13.19□□□□□ -0.3
SHKBP1-225ENST00000600733 F8WDY8 70 aa13.18□□□□□ -0.3
SHKBP1-225ENST00000600733 KCNQ1DNQ9H478 68 aa13.18□□□□□ -0.3
SHKBP1-225ENST00000600733 CASC10Q5T4H9 136 aa13.15□□□□□ -0.3
SHKBP1-225ENST00000600733 DEFB105AQ8NG35 78 aa13.15□□□□□ -0.3
SHKBP1-225ENST00000600733 DNAH3Q8TD57 4116 aa13.15□□□□□ -0.3
SHKBP1-225ENST00000600733 DPH3Q96FX2 82 aa13.15□□□□□ -0.3
SHKBP1-225ENST00000600733 TRAV7A0A075B6U4 112 aa13.13□□□□□ -0.31
SHKBP1-225ENST00000600733 FAM168BA1KXE4 195 aa13.13□□□□□ -0.31
SHKBP1-225ENST00000600733 RPL37AP8A6NKH3 93 aa13.13□□□□□ -0.31
SHKBP1-225ENST00000600733 LINC00588Q9Y4M8 146 aa13.13□□□□□ -0.31
SHKBP1-225ENST00000600733 RPS28P62857 69 aaKnown RBP13.12□□□□□ -0.31
SHKBP1-225ENST00000600733 PRB2P02812 416 aaPredicted RBP13.11□□□□□ -0.31
SHKBP1-225ENST00000600733 Q8N377 158 aa13.11□□□□□ -0.31
SHKBP1-225ENST00000600733 BCE1O60756 84 aa13.1□□□□□ -0.31
SHKBP1-225ENST00000600733 TLX1NBP0CAT3 122 aa13.1□□□□□ -0.31
SHKBP1-225ENST00000600733 FAM19A5Q7Z5A7 132 aaPredicted RBP13.1□□□□□ -0.31
SHKBP1-225ENST00000600733 NBEAL1Q6ZS30 2694 aa13.09□□□□□ -0.31
SHKBP1-225ENST00000600733 MRAPQ8TCY5 172 aa13.09□□□□□ -0.31
SHKBP1-225ENST00000600733 Q8N9L7 120 aa13.08□□□□□ -0.32
SHKBP1-225ENST00000600733 C3orf84H3BNL1 204 aa13.08□□□□□ -0.32
SHKBP1-225ENST00000600733 OXTP01178 125 aa13.07□□□□□ -0.32
SHKBP1-225ENST00000600733 Q6ZRX8 168 aa13.06□□□□□ -0.32
SHKBP1-225ENST00000600733 Q9BRP9 147 aa13.06□□□□□ -0.32
SHKBP1-225ENST00000600733 KRTAP7-1Q8IUC3 87 aa13.06□□□□□ -0.32
SHKBP1-225ENST00000600733 DNAH1Q9P2D7 4330 aa13.06□□□□□ -0.32
SHKBP1-225ENST00000600733 PLA2G2DQ9UNK4 145 aa13.05□□□□□ -0.32
SHKBP1-225ENST00000600733 KRTAP4-16G5E9R7 235 aaPredicted RBP13.05□□□□□ -0.32
SHKBP1-225ENST00000600733 TM2D3Q9BRN9 247 aa13.05□□□□□ -0.32
SHKBP1-225ENST00000600733 IGLV1-50A0A075B6I6 118 aa13.04□□□□□ -0.32
SHKBP1-225ENST00000600733 BAHCC1Q9P281 2608 aa13.04□□□□□ -0.32
SHKBP1-225ENST00000600733 NREPQ16612 68 aa13.04□□□□□ -0.32
SHKBP1-225ENST00000600733 SNURFQ9Y675 71 aa13.04□□□□□ -0.32
SHKBP1-225ENST00000600733 DHRS4-AS1Q9P1J3 65 aa13.02□□□□□ -0.32
SHKBP1-225ENST00000600733 IGLV5-48A0A075B6I7 105 aa13.02□□□□□ -0.33
SHKBP1-225ENST00000600733 H7BZZ5 65 aa13.02□□□□□ -0.33
SHKBP1-225ENST00000600733 COL6A5A8TX70 2615 aa13.01□□□□□ -0.33
SHKBP1-225ENST00000600733 ST20-AS1Q8NBB2 130 aa13.01□□□□□ -0.33
SHKBP1-225ENST00000600733 IGLV5-37A0A075B6J1 123 aa13.01□□□□□ -0.33
SHKBP1-225ENST00000600733 ETDCA0A1B0GVM5 59 aa13.01□□□□□ -0.33
SHKBP1-225ENST00000600733 PRYO14603 147 aa13.01□□□□□ -0.33
SHKBP1-225ENST00000600733 KLKP1Q107X0 134 aa13□□□□□ -0.33
SHKBP1-225ENST00000600733 IGKV4-1P06312 121 aa13□□□□□ -0.33
SHKBP1-225ENST00000600733 SPRR1AP35321 89 aa13□□□□□ -0.33
SHKBP1-225ENST00000600733 RMI2Q96E14 147 aa13□□□□□ -0.33
SHKBP1-225ENST00000600733 BPY2O14599 106 aa12.99□□□□□ -0.33
SHKBP1-225ENST00000600733 HUWE1Q7Z6Z7 4374 aaKnown RBP12.97□□□□□ -0.33
SHKBP1-225ENST00000600733 FAM236DA0A1B0GTK5 79 aa12.97□□□□□ -0.33
SHKBP1-225ENST00000600733 FAM236CP0DP71 79 aa12.97□□□□□ -0.33
SHKBP1-225ENST00000600733 MRPL55Q7Z7F7 128 aaKnown RBP12.97□□□□□ -0.33
SHKBP1-225ENST00000600733 ERC2-IT1O76042 136 aa12.96□□□□□ -0.33
SHKBP1-225ENST00000600733 A0A1W2PNM2 257 aa12.95□□□□□ -0.34
SHKBP1-225ENST00000600733 LYSTQ99698 3801 aa12.95□□□□□ -0.34
SHKBP1-225ENST00000600733 FUSP35637 526 aaKnown RBP eCLIP12.93□□□□□ -0.34
SHKBP1-225ENST00000600733 TNP2Q05952 138 aa12.93□□□□□ -0.34
SHKBP1-225ENST00000600733 C1orf137Q5JT78 98 aa12.93□□□□□ -0.34
SHKBP1-225ENST00000600733 K7EIL1 84 aa12.92□□□□□ -0.34
SHKBP1-225ENST00000600733 F8WEM9 126 aa12.91□□□□□ -0.34
SHKBP1-225ENST00000600733 UBE2BP63146 152 aa12.91□□□□□ -0.34
SHKBP1-225ENST00000600733 DNAH10Q8IVF4 4471 aa12.9□□□□□ -0.34
SHKBP1-225ENST00000600733 REG3GQ6UW15 175 aa12.87□□□□□ -0.35
SHKBP1-225ENST00000600733 Q8NBF4 154 aa12.87□□□□□ -0.35
SHKBP1-225ENST00000600733 TMEM254Q8TBM7 123 aa12.86□□□□□ -0.35
SHKBP1-225ENST00000600733 KRTAP1-5Q9BYS1 174 aa12.86□□□□□ -0.35
SHKBP1-225ENST00000600733 OCR1Q9BZK8 76 aa12.86□□□□□ -0.35
SHKBP1-225ENST00000600733 STAB2Q8WWQ8 2551 aa12.85□□□□□ -0.35
SHKBP1-225ENST00000600733 MGAM2Q2M2H8 2515 aa12.85□□□□□ -0.35
SHKBP1-225ENST00000600733 COL7A1Q02388 2944 aa12.85□□□□□ -0.35
SHKBP1-225ENST00000600733 IGKV2-24A0A0C4DH68 120 aa12.83□□□□□ -0.35
SHKBP1-225ENST00000600733 A0A1B0GW54 56 aa12.83□□□□□ -0.35
SHKBP1-225ENST00000600733 A0A096LNI7 61 aa12.83□□□□□ -0.36
SHKBP1-225ENST00000600733 Q5XG85 94 aa12.83□□□□□ -0.36
SHKBP1-225ENST00000600733 SPRR4Q96PI1 79 aa12.82□□□□□ -0.36
SHKBP1-225ENST00000600733 SMIM29Q86T20 159 aa12.82□□□□□ -0.36
SHKBP1-225ENST00000600733 SERP1Q9Y6X1 66 aa12.82□□□□□ -0.36
SHKBP1-225ENST00000600733 A0A0G2JQZ4 141 aa12.81□□□□□ -0.36
SHKBP1-225ENST00000600733 A0A1W2PNN7 141 aa12.81□□□□□ -0.36
SHKBP1-225ENST00000600733 C4orf26Q17RF5 130 aa12.81□□□□□ -0.36
SHKBP1-225ENST00000600733 NDUFC1O43677 76 aa12.8□□□□□ -0.36
SHKBP1-225ENST00000600733 PRLHP81277 87 aa12.79□□□□□ -0.36
SHKBP1-225ENST00000600733 DNAH9Q9NYC9 4486 aa12.79□□□□□ -0.36
SHKBP1-225ENST00000600733 EPM2AB3EWF7 344 aa12.79□□□□□ -0.36
SHKBP1-225ENST00000600733 LINC00476Q8WZB0 136 aa12.78□□□□□ -0.36
SHKBP1-225ENST00000600733 C16orf90A8MZG2 172 aa12.77□□□□□ -0.37
SHKBP1-225ENST00000600733 DSCR10P59022 87 aa12.76□□□□□ -0.37
SHKBP1-225ENST00000600733 PSCAO43653 123 aa12.76□□□□□ -0.37
SHKBP1-225ENST00000600733 FAM30AQ9NZY2 134 aa12.75□□□□□ -0.37
SHKBP1-225ENST00000600733 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.74□□□□□ -0.37
SHKBP1-225ENST00000600733 A0A0U1RQV1 116 aa12.74□□□□□ -0.37
SHKBP1-225ENST00000600733 TENM2Q9NT68 2774 aa12.74□□□□□ -0.37
SHKBP1-225ENST00000600733 K7EQZ3 153 aa12.74□□□□□ -0.37
SHKBP1-225ENST00000600733 SRRM2Q9UQ35 2752 aaKnown RBP12.74□□□□□ -0.37
SHKBP1-225ENST00000600733 CNBPP62633 177 aaKnown RBP12.73□□□□□ -0.37
SHKBP1-225ENST00000600733 C5orf47Q569G3 176 aa12.73□□□□□ -0.37
SHKBP1-225ENST00000600733 HIGD2AQ9BW72 106 aa12.73□□□□□ -0.37
SHKBP1-225ENST00000600733 CSMD3Q7Z407 3707 aa12.72□□□□□ -0.37
SHKBP1-225ENST00000600733 IGFL1Q6UW32 110 aa12.72□□□□□ -0.37
SHKBP1-225ENST00000600733 HRCT1Q6UXD1 115 aa12.72□□□□□ -0.37
SHKBP1-225ENST00000600733 CHTF8P0CG12 524 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms