RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 SPANXDQ9BXN6 97 aa9.56□□□□□ -0.88
LSM4-206ENST00000600289 ETDCA0A1B0GVM5 59 aa9.55□□□□□ -0.88
LSM4-206ENST00000600289 HIGD2AQ9BW72 106 aa9.55□□□□□ -0.88
LSM4-206ENST00000600289 C5orf52A6NGY3 159 aa9.54□□□□□ -0.88
LSM4-206ENST00000600289 S100A7L2Q5SY68 101 aa9.54□□□□□ -0.88
LSM4-206ENST00000600289 B5MCH6 92 aa9.53□□□□□ -0.88
LSM4-206ENST00000600289 SCGB1D4Q6XE38 83 aa9.53□□□□□ -0.88
LSM4-206ENST00000600289 Q6ZVH6 145 aa9.53□□□□□ -0.88
LSM4-206ENST00000600289 CBY1Q9Y3M2 126 aa9.53□□□□□ -0.88
LSM4-206ENST00000600289 ZNF706Q9Y5V0 76 aaPredicted RBP9.53□□□□□ -0.88
LSM4-206ENST00000600289 TRAV23DV6A0A075B6W5 121 aa9.52□□□□□ -0.89
LSM4-206ENST00000600289 KRTAP13-2Q52LG2 175 aa9.52□□□□□ -0.89
LSM4-206ENST00000600289 PCP2Q8IVA1 136 aa9.52□□□□□ -0.89
LSM4-206ENST00000600289 TYMSOSQ8TAI1 123 aa9.52□□□□□ -0.89
LSM4-206ENST00000600289 COPS9Q8WXC6 57 aa9.52□□□□□ -0.89
LSM4-206ENST00000600289 SPRR4Q96PI1 79 aa9.52□□□□□ -0.89
LSM4-206ENST00000600289 IFITM1P13164 125 aa9.51□□□□□ -0.89
LSM4-206ENST00000600289 Q6ZRX8 168 aa9.51□□□□□ -0.89
LSM4-206ENST00000600289 SMCR5Q8TEV8 140 aa9.51□□□□□ -0.89
LSM4-206ENST00000600289 ANAPC11Q9NYG5 84 aa9.51□□□□□ -0.89
LSM4-206ENST00000600289 HSBP1L1C9JCN9 74 aa9.49□□□□□ -0.89
LSM4-206ENST00000600289 LCE2AQ5TA79 106 aaPredicted RBP9.49□□□□□ -0.89
LSM4-206ENST00000600289 LINC00518Q8N0U6 118 aa9.49□□□□□ -0.89
LSM4-206ENST00000600289 ZNF73O43830 326 aaPredicted RBP9.48□□□□□ -0.89
LSM4-206ENST00000600289 JOSD1Q15040 202 aaPredicted RBP9.47□□□□□ -0.89
LSM4-206ENST00000600289 Q9BRP9 147 aa9.47□□□□□ -0.89
LSM4-206ENST00000600289 CTAG1AP78358 180 aa9.46□□□□□ -0.9
LSM4-206ENST00000600289 LINC00483Q53H64 154 aa9.46□□□□□ -0.9
LSM4-206ENST00000600289 SCGB1D1O95968 90 aa9.44□□□□□ -0.9
LSM4-206ENST00000600289 OR13C6PQ8NH95 151 aa9.44□□□□□ -0.9
LSM4-206ENST00000600289 ERC2-IT1O76042 136 aa9.43□□□□□ -0.9
LSM4-206ENST00000600289 MUSTN1Q8IVN3 82 aa9.43□□□□□ -0.9
LSM4-206ENST00000600289 HINT1P49773 126 aaPredicted RBP9.42□□□□□ -0.9
LSM4-206ENST00000600289 LINC00304Q8N9R0 145 aa9.42□□□□□ -0.9
LSM4-206ENST00000600289 C3orf22Q8N5N4 141 aa9.41□□□□□ -0.9
LSM4-206ENST00000600289 TRBV7-6A0A0J9YX20 115 aa9.39□□□□□ -0.91
LSM4-206ENST00000600289 DLEU1O43261 78 aa9.38□□□□□ -0.91
LSM4-206ENST00000600289 COX8AP10176 69 aa9.38□□□□□ -0.91
LSM4-206ENST00000600289 ELOF1P60002 83 aaKnown RBP9.38□□□□□ -0.91
LSM4-206ENST00000600289 DHRS4-AS1Q9P1J3 65 aa9.38□□□□□ -0.91
LSM4-206ENST00000600289 TRAV13-2A0A0B4J235 113 aa9.37□□□□□ -0.91
LSM4-206ENST00000600289 TSPAN13O95857 204 aa9.37□□□□□ -0.91
LSM4-206ENST00000600289 C6orf99Q4VX62 202 aa9.37□□□□□ -0.91
LSM4-206ENST00000600289 GAGE2AQ6NT46 116 aa9.37□□□□□ -0.91
LSM4-206ENST00000600289 COX7BP24311 80 aa9.36□□□□□ -0.91
LSM4-206ENST00000600289 SPAG11AQ6PDA7 123 aa9.36□□□□□ -0.91
LSM4-206ENST00000600289 A6NDN8 102 aa9.35□□□□□ -0.91
LSM4-206ENST00000600289 A0A0U1RQV1 116 aa9.34□□□□□ -0.91
LSM4-206ENST00000600289 SPRR1BP22528 89 aa9.34□□□□□ -0.91
LSM4-206ENST00000600289 A0A1B0GWB2 263 aa9.33□□□□□ -0.92
LSM4-206ENST00000600289 FSIP2Q5CZC0 6907 aa9.33□□□□□ -0.92
LSM4-206ENST00000600289 SSBP3-AS1Q7Z2R9 100 aa9.32□□□□□ -0.92
LSM4-206ENST00000600289 ST20-AS1Q8NBB2 130 aa9.32□□□□□ -0.92
LSM4-206ENST00000600289 Q8NBF4 154 aa9.32□□□□□ -0.92
LSM4-206ENST00000600289 A4D1N5 150 aa9.31□□□□□ -0.92
LSM4-206ENST00000600289 PRR4Q16378 134 aa9.31□□□□□ -0.92
LSM4-206ENST00000600289 SPATA45Q537H7 98 aa9.3□□□□□ -0.92
LSM4-206ENST00000600289 VAMP8Q9BV40 100 aa9.3□□□□□ -0.92
LSM4-206ENST00000600289 HIGD1BQ9P298 99 aa9.3□□□□□ -0.92
LSM4-206ENST00000600289 PAM16Q9Y3D7 125 aa9.3□□□□□ -0.92
LSM4-206ENST00000600289 MOBPQ13875 183 aa9.29□□□□□ -0.92
LSM4-206ENST00000600289 SMIM11BQ8TCY0 68 aa9.29□□□□□ -0.92
LSM4-206ENST00000600289 HIST1H4GQ99525 98 aa9.29□□□□□ -0.92
LSM4-206ENST00000600289 IGLV9-49A0A0B4J1Y8 123 aa9.28□□□□□ -0.92
LSM4-206ENST00000600289 SPINK1P00995 79 aa9.28□□□□□ -0.92
LSM4-206ENST00000600289 RPS29P62273 56 aaKnown RBP9.28□□□□□ -0.92
LSM4-206ENST00000600289 C4orf48Q5BLP8 95 aa9.28□□□□□ -0.92
LSM4-206ENST00000600289 SLC25A34Q6PIV7 304 aa9.28□□□□□ -0.92
LSM4-206ENST00000600289 CRCT1Q9UGL9 99 aa9.28□□□□□ -0.92
LSM4-206ENST00000600289 C14orf144Q96I85 54 aa9.27□□□□□ -0.93
LSM4-206ENST00000600289 NHP2Q9NX24 153 aaKnown RBP9.25□□□□□ -0.93
LSM4-206ENST00000600289 IGLV5-48A0A075B6I7 105 aa9.24□□□□□ -0.93
LSM4-206ENST00000600289 PYY3Q5JQD4 70 aa9.24□□□□□ -0.93
LSM4-206ENST00000600289 C2orf91Q6ZV80 131 aa9.24□□□□□ -0.93
LSM4-206ENST00000600289 TEX49A0A1B0GTD5 131 aa9.23□□□□□ -0.93
LSM4-206ENST00000600289 C9orf153Q5TBE3 101 aa9.23□□□□□ -0.93
LSM4-206ENST00000600289 RETNLBQ9BQ08 111 aa9.23□□□□□ -0.93
LSM4-206ENST00000600289 LAMTOR3Q9UHA4 124 aa9.23□□□□□ -0.93
LSM4-206ENST00000600289 LINC01547P58512 204 aaPredicted RBP9.22□□□□□ -0.93
LSM4-206ENST00000600289 VAMP3Q15836 100 aa9.22□□□□□ -0.93
LSM4-206ENST00000600289 TAL2Q16559 108 aa9.21□□□□□ -0.94
LSM4-206ENST00000600289 FP248Q71RG6 208 aaPredicted RBP9.21□□□□□ -0.94
LSM4-206ENST00000600289 TMA7Q9Y2S6 64 aaKnown RBP9.21□□□□□ -0.94
LSM4-206ENST00000600289 TPRXLQ17RH7 258 aa9.2□□□□□ -0.94
LSM4-206ENST00000600289 C12orf57Q99622 126 aa9.19□□□□□ -0.94
LSM4-206ENST00000600289 A0A0B4J2C4 111 aa9.18□□□□□ -0.94
LSM4-206ENST00000600289 SLC25A20O43772 301 aa9.18□□□□□ -0.94
LSM4-206ENST00000600289 LINC00575Q6W349 94 aa9.18□□□□□ -0.94
LSM4-206ENST00000600289 SMIM29Q86T20 159 aa9.18□□□□□ -0.94
LSM4-206ENST00000600289 IGLV7-46A0A075B6I9 117 aa9.17□□□□□ -0.94
LSM4-206ENST00000600289 CFC1BP0CG36 223 aa9.17□□□□□ -0.94
LSM4-206ENST00000600289 CFC1P0CG37 223 aa9.17□□□□□ -0.94
LSM4-206ENST00000600289 BVES-AS1Q5T3Y7 98 aa9.17□□□□□ -0.94
LSM4-206ENST00000600289 LCE2DQ5TA82 110 aaPredicted RBP9.17□□□□□ -0.94
LSM4-206ENST00000600289 Q8N377 158 aa9.17□□□□□ -0.94
LSM4-206ENST00000600289 DEFB105AQ8NG35 78 aa9.17□□□□□ -0.94
LSM4-206ENST00000600289 CEND1Q8N111 149 aa9.16□□□□□ -0.94
LSM4-206ENST00000600289 TMEM238LA0A1B0GVL6 79 aa9.14□□□□□ -0.95
LSM4-206ENST00000600289 hADV29S1A0JD25 119 aa9.14□□□□□ -0.95
LSM4-206ENST00000600289 A6NJY4 79 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms