RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 SLC25A20O43772 301 aa4.72□□□□□ -1.65
SHKBP1-220ENST00000599716 SNAPINO95295 136 aa4.72□□□□□ -1.65
SHKBP1-220ENST00000599716 HRCT1Q6UXD1 115 aa4.72□□□□□ -1.65
SHKBP1-220ENST00000599716 ST20-AS1Q8NBB2 130 aa4.72□□□□□ -1.65
SHKBP1-220ENST00000599716 FLGP20930 4061 aaPredicted RBP4.71□□□□□ -1.66
SHKBP1-220ENST00000599716 SMIM6P0DI80 62 aa4.71□□□□□ -1.66
SHKBP1-220ENST00000599716 TSPEAR-AS2P59090 65 aa4.71□□□□□ -1.66
SHKBP1-220ENST00000599716 UQCC3Q6UW78 93 aa4.71□□□□□ -1.66
SHKBP1-220ENST00000599716 SEC11CQ9BY50 192 aa4.71□□□□□ -1.66
SHKBP1-220ENST00000599716 RPS10P5Q9NQ39 176 aa4.71□□□□□ -1.66
SHKBP1-220ENST00000599716 TRAPPC1Q9Y5R8 145 aa4.71□□□□□ -1.66
SHKBP1-220ENST00000599716 H0Y8G0 127 aa4.7□□□□□ -1.66
SHKBP1-220ENST00000599716 DDTP30046 118 aa4.7□□□□□ -1.66
SHKBP1-220ENST00000599716 SFTA2Q6UW10 78 aa4.7□□□□□ -1.66
SHKBP1-220ENST00000599716 SSBP3-AS1Q7Z2R9 100 aa4.7□□□□□ -1.66
SHKBP1-220ENST00000599716 FAM19A2Q8N3H0 131 aa4.7□□□□□ -1.66
SHKBP1-220ENST00000599716 C12orf57Q99622 126 aa4.7□□□□□ -1.66
SHKBP1-220ENST00000599716 NPC2P61916 151 aa4.69□□□□□ -1.66
SHKBP1-220ENST00000599716 RPS29P62273 56 aaKnown RBP4.69□□□□□ -1.66
SHKBP1-220ENST00000599716 KRTAP5-3Q6L8H2 238 aa4.69□□□□□ -1.66
SHKBP1-220ENST00000599716 Q6ZRX8 168 aa4.69□□□□□ -1.66
SHKBP1-220ENST00000599716 PCP4L1A6NKN8 68 aa4.68□□□□□ -1.66
SHKBP1-220ENST00000599716 EIF4EBP3O60516 100 aaPredicted RBP4.68□□□□□ -1.66
SHKBP1-220ENST00000599716 COX19Q49B96 90 aa4.68□□□□□ -1.66
SHKBP1-220ENST00000599716 IFI27L1Q96BM0 104 aa4.68□□□□□ -1.66
SHKBP1-220ENST00000599716 TRAV12-1A0A0B4J245 112 aa4.67□□□□□ -1.66
SHKBP1-220ENST00000599716 GHRHP01286 108 aa4.67□□□□□ -1.66
SHKBP1-220ENST00000599716 AKR1D1P51857 326 aa4.67□□□□□ -1.66
SHKBP1-220ENST00000599716 SVBPQ8N300 66 aa4.67□□□□□ -1.66
SHKBP1-220ENST00000599716 MYMXA0A1B0GTQ4 84 aa4.66□□□□□ -1.66
SHKBP1-220ENST00000599716 HERV-K104P63124 156 aa4.66□□□□□ -1.66
SHKBP1-220ENST00000599716 SOSTDC1Q6X4U4 206 aa4.66□□□□□ -1.66
SHKBP1-220ENST00000599716 PMCHL2Q9BQD1 86 aa4.66□□□□□ -1.66
SHKBP1-220ENST00000599716 MUC12Q9UKN1 5478 aa4.66□□□□□ -1.66
SHKBP1-220ENST00000599716 TRAV23DV6A0A075B6W5 121 aa4.65□□□□□ -1.67
SHKBP1-220ENST00000599716 H7C2G1 150 aa4.65□□□□□ -1.67
SHKBP1-220ENST00000599716 M0R2T5 61 aa4.65□□□□□ -1.67
SHKBP1-220ENST00000599716 IGLV6-57P01721 117 aa4.65□□□□□ -1.67
SHKBP1-220ENST00000599716 APOC3P02656 99 aa4.65□□□□□ -1.67
SHKBP1-220ENST00000599716 RHEBQ15382 184 aa4.65□□□□□ -1.67
SHKBP1-220ENST00000599716 S100A7L2Q5SY68 101 aa4.65□□□□□ -1.67
SHKBP1-220ENST00000599716 A0A0G2JQZ4 141 aa4.64□□□□□ -1.67
SHKBP1-220ENST00000599716 KRTAP19-4Q3LI73 84 aa4.64□□□□□ -1.67
SHKBP1-220ENST00000599716 C10orf91Q5T1B1 145 aa4.64□□□□□ -1.67
SHKBP1-220ENST00000599716 MAP1LC3CQ9BXW4 147 aa4.64□□□□□ -1.67
SHKBP1-220ENST00000599716 SPANXB1Q9NS25 103 aaPredicted RBP4.64□□□□□ -1.67
SHKBP1-220ENST00000599716 LOC107984156A0A0G2JMH3 177 aa4.63□□□□□ -1.67
SHKBP1-220ENST00000599716 TRBV10-2A0A0K0K1G8 114 aa4.63□□□□□ -1.67
SHKBP1-220ENST00000599716 ZNF73O43830 326 aaPredicted RBP4.63□□□□□ -1.67
SHKBP1-220ENST00000599716 ADAMTSL4-AS1Q5T5F5 129 aa4.63□□□□□ -1.67
SHKBP1-220ENST00000599716 ARL17AQ8IVW1 177 aa4.63□□□□□ -1.67
SHKBP1-220ENST00000599716 J3QQQ9 107 aa4.62□□□□□ -1.67
SHKBP1-220ENST00000599716 LEPROTO15243 131 aa4.62□□□□□ -1.67
SHKBP1-220ENST00000599716 MIEN1Q9BRT3 115 aa4.62□□□□□ -1.67
SHKBP1-220ENST00000599716 GPR98Q8WXG9 6306 aa4.62□□□□□ -1.67
SHKBP1-220ENST00000599716 LINC00587B1AMM8 73 aa4.61□□□□□ -1.67
SHKBP1-220ENST00000599716 Q1RN00 199 aa4.61□□□□□ -1.67
SHKBP1-220ENST00000599716 KRTAP6-3Q3LI67 103 aa4.61□□□□□ -1.67
SHKBP1-220ENST00000599716 CHCHD1Q96BP2 118 aaKnown RBP4.61□□□□□ -1.67
SHKBP1-220ENST00000599716 HSBP1O75506 76 aa4.6□□□□□ -1.67
SHKBP1-220ENST00000599716 LINC00310P59036 64 aa4.6□□□□□ -1.67
SHKBP1-220ENST00000599716 JOSD1Q15040 202 aaPredicted RBP4.6□□□□□ -1.67
SHKBP1-220ENST00000599716 KRTAP20-1Q3LI63 56 aa4.6□□□□□ -1.67
SHKBP1-220ENST00000599716 COX6B2Q6YFQ2 88 aa4.6□□□□□ -1.67
SHKBP1-220ENST00000599716 DEFB105AQ8NG35 78 aa4.6□□□□□ -1.67
SHKBP1-220ENST00000599716 LIMD2Q9BT23 127 aa4.6□□□□□ -1.67
SHKBP1-220ENST00000599716 KRTAP9-3Q9BYQ3 159 aa4.6□□□□□ -1.67
SHKBP1-220ENST00000599716 NDUFC2O95298 119 aa4.59□□□□□ -1.67
SHKBP1-220ENST00000599716 FABP4P15090 132 aa4.59□□□□□ -1.67
SHKBP1-220ENST00000599716 LGALS3P17931 250 aaKnown RBP4.59□□□□□ -1.67
SHKBP1-220ENST00000599716 OR13C6PQ8NH95 151 aa4.59□□□□□ -1.67
SHKBP1-220ENST00000599716 YPEL4Q96NS1 127 aa4.59□□□□□ -1.67
SHKBP1-220ENST00000599716 A0A0J9YXY3 114 aa4.58□□□□□ -1.68
SHKBP1-220ENST00000599716 C5orf52A6NGY3 159 aa4.58□□□□□ -1.68
SHKBP1-220ENST00000599716 SPRR1BP22528 89 aa4.58□□□□□ -1.68
SHKBP1-220ENST00000599716 SERF1AO75920 110 aa4.57□□□□□ -1.68
SHKBP1-220ENST00000599716 LEPROTL1O95214 131 aa4.57□□□□□ -1.68
SHKBP1-220ENST00000599716 RPL37P61927 97 aaKnown RBP4.57□□□□□ -1.68
SHKBP1-220ENST00000599716 C1orf195Q5TG92 126 aa4.57□□□□□ -1.68
SHKBP1-220ENST00000599716 DPM2O94777 84 aa4.56□□□□□ -1.68
SHKBP1-220ENST00000599716 IGKCP01834 107 aa4.56□□□□□ -1.68
SHKBP1-220ENST00000599716 LAMTOR3Q9UHA4 124 aa4.56□□□□□ -1.68
SHKBP1-220ENST00000599716 TSTD3H0UI37 97 aa4.55□□□□□ -1.68
SHKBP1-220ENST00000599716 PLNP26678 52 aa4.55□□□□□ -1.68
SHKBP1-220ENST00000599716 S100A2P29034 98 aa4.55□□□□□ -1.68
SHKBP1-220ENST00000599716 NMUP48645 174 aa4.55□□□□□ -1.68
SHKBP1-220ENST00000599716 HINT1P49773 126 aaPredicted RBP4.55□□□□□ -1.68
SHKBP1-220ENST00000599716 HERVK_113P61574 105 aa4.55□□□□□ -1.68
SHKBP1-220ENST00000599716 TAL2Q16559 108 aa4.55□□□□□ -1.68
SHKBP1-220ENST00000599716 Q6Q795 121 aa4.55□□□□□ -1.68
SHKBP1-220ENST00000599716 SMIM29Q86T20 159 aa4.55□□□□□ -1.68
SHKBP1-220ENST00000599716 LINC00308Q8TCZ7 52 aa4.55□□□□□ -1.68
SHKBP1-220ENST00000599716 LITAFQ99732 161 aa4.55□□□□□ -1.68
SHKBP1-220ENST00000599716 TTTY13Q9BZ97 58 aa4.55□□□□□ -1.68
SHKBP1-220ENST00000599716 COLCA2A8K830 154 aa4.54□□□□□ -1.68
SHKBP1-220ENST00000599716 TRGC2P03986 189 aa4.54□□□□□ -1.68
SHKBP1-220ENST00000599716 COX7BP24311 80 aa4.54□□□□□ -1.68
SHKBP1-220ENST00000599716 SNRPEP62304 92 aaKnown RBP4.54□□□□□ -1.68
SHKBP1-220ENST00000599716 C6orf99Q4VX62 202 aa4.54□□□□□ -1.68
SHKBP1-220ENST00000599716 DHRS4-AS1Q9P1J3 65 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 1308 ms