RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 TRAV23DV6A0A075B6W5 121 aa8.17□□□□□ -1.1
UPF1-205ENST00000598209 B5MCH6 92 aa8.17□□□□□ -1.1
UPF1-205ENST00000598209 HSBP1L1C9JCN9 74 aa8.17□□□□□ -1.1
UPF1-205ENST00000598209 KRTAP13-2Q52LG2 175 aa8.17□□□□□ -1.1
UPF1-205ENST00000598209 SMCR5Q8TEV8 140 aa8.16□□□□□ -1.1
UPF1-205ENST00000598209 SPRR4Q96PI1 79 aa8.16□□□□□ -1.1
UPF1-205ENST00000598209 SCGB1D1O95968 90 aa8.15□□□□□ -1.1
UPF1-205ENST00000598209 OR13C6PQ8NH95 151 aa8.15□□□□□ -1.1
UPF1-205ENST00000598209 ZNF706Q9Y5V0 76 aaPredicted RBP8.15□□□□□ -1.1
UPF1-205ENST00000598209 ZNF73O43830 326 aaPredicted RBP8.14□□□□□ -1.11
UPF1-205ENST00000598209 IFITM1P13164 125 aa8.14□□□□□ -1.11
UPF1-205ENST00000598209 Q6ZRX8 168 aa8.14□□□□□ -1.11
UPF1-205ENST00000598209 Q6ZVH6 145 aa8.14□□□□□ -1.11
UPF1-205ENST00000598209 COPS9Q8WXC6 57 aa8.14□□□□□ -1.11
UPF1-205ENST00000598209 CBY1Q9Y3M2 126 aa8.14□□□□□ -1.11
UPF1-205ENST00000598209 LINC00518Q8N0U6 118 aa8.13□□□□□ -1.11
UPF1-205ENST00000598209 MUSTN1Q8IVN3 82 aa8.12□□□□□ -1.11
UPF1-205ENST00000598209 Q9BRP9 147 aa8.12□□□□□ -1.11
UPF1-205ENST00000598209 PPDPFQ9H3Y8 114 aa8.12□□□□□ -1.11
UPF1-205ENST00000598209 ERC2-IT1O76042 136 aa8.11□□□□□ -1.11
UPF1-205ENST00000598209 JOSD1Q15040 202 aaPredicted RBP8.11□□□□□ -1.11
UPF1-205ENST00000598209 C3orf22Q8N5N4 141 aa8.11□□□□□ -1.11
UPF1-205ENST00000598209 TSPAN13O95857 204 aa8.1□□□□□ -1.11
UPF1-205ENST00000598209 HINT1P49773 126 aaPredicted RBP8.1□□□□□ -1.11
UPF1-205ENST00000598209 LINC00483Q53H64 154 aa8.08□□□□□ -1.12
UPF1-205ENST00000598209 GAGE2AQ6NT46 116 aa8.08□□□□□ -1.12
UPF1-205ENST00000598209 LINC00304Q8N9R0 145 aa8.08□□□□□ -1.12
UPF1-205ENST00000598209 A6NDN8 102 aa8.06□□□□□ -1.12
UPF1-205ENST00000598209 C6orf99Q4VX62 202 aa8.06□□□□□ -1.12
UPF1-205ENST00000598209 COX8AP10176 69 aa8.05□□□□□ -1.12
UPF1-205ENST00000598209 COX7BP24311 80 aa8.04□□□□□ -1.12
UPF1-205ENST00000598209 TRAV13-2A0A0B4J235 113 aa8.03□□□□□ -1.12
UPF1-205ENST00000598209 ELOF1P60002 83 aaKnown RBP8.03□□□□□ -1.12
UPF1-205ENST00000598209 PRR4Q16378 134 aa8.03□□□□□ -1.12
UPF1-205ENST00000598209 ST20-AS1Q8NBB2 130 aa8.03□□□□□ -1.12
UPF1-205ENST00000598209 DHRS4-AS1Q9P1J3 65 aa8.03□□□□□ -1.12
UPF1-205ENST00000598209 PAM16Q9Y3D7 125 aa8.03□□□□□ -1.12
UPF1-205ENST00000598209 SPATA45Q537H7 98 aa8.02□□□□□ -1.13
UPF1-205ENST00000598209 LRP2P98164 4655 aa8.02□□□□□ -1.13
UPF1-205ENST00000598209 IGLV9-49A0A0B4J1Y8 123 aa8.01□□□□□ -1.13
UPF1-205ENST00000598209 TRBV7-6A0A0J9YX20 115 aa8.01□□□□□ -1.13
UPF1-205ENST00000598209 A4D1N5 150 aa8.01□□□□□ -1.13
UPF1-205ENST00000598209 DLEU1O43261 78 aa8.01□□□□□ -1.13
UPF1-205ENST00000598209 Q8NBF4 154 aa8.01□□□□□ -1.13
UPF1-205ENST00000598209 C14orf144Q96I85 54 aa8.01□□□□□ -1.13
UPF1-205ENST00000598209 VAMP8Q9BV40 100 aa8.01□□□□□ -1.13
UPF1-205ENST00000598209 UBR4Q5T4S7 5183 aa8□□□□□ -1.13
UPF1-205ENST00000598209 A0A1B0GWB2 263 aa8□□□□□ -1.13
UPF1-205ENST00000598209 CTAG1AP78358 180 aa8□□□□□ -1.13
UPF1-205ENST00000598209 MOBPQ13875 183 aa8□□□□□ -1.13
UPF1-205ENST00000598209 SPAG11AQ6PDA7 123 aa8□□□□□ -1.13
UPF1-205ENST00000598209 HIST1H4GQ99525 98 aa8□□□□□ -1.13
UPF1-205ENST00000598209 TMA7Q9Y2S6 64 aaKnown RBP8□□□□□ -1.13
UPF1-205ENST00000598209 C4orf48Q5BLP8 95 aa7.99□□□□□ -1.13
UPF1-205ENST00000598209 SMIM11BQ8TCY0 68 aa7.99□□□□□ -1.13
UPF1-205ENST00000598209 SSBP3-AS1Q7Z2R9 100 aa7.97□□□□□ -1.13
UPF1-205ENST00000598209 RETNLBQ9BQ08 111 aa7.97□□□□□ -1.13
UPF1-205ENST00000598209 LPAP08519 4548 aa7.97□□□□□ -1.13
UPF1-205ENST00000598209 SPRR1BP22528 89 aa7.96□□□□□ -1.14
UPF1-205ENST00000598209 C9orf153Q5TBE3 101 aa7.96□□□□□ -1.14
UPF1-205ENST00000598209 SLC25A34Q6PIV7 304 aa7.96□□□□□ -1.14
UPF1-205ENST00000598209 C12orf57Q99622 126 aa7.96□□□□□ -1.14
UPF1-205ENST00000598209 HIGD1BQ9P298 99 aa7.95□□□□□ -1.14
UPF1-205ENST00000598209 TAL2Q16559 108 aa7.94□□□□□ -1.14
UPF1-205ENST00000598209 PYY3Q5JQD4 70 aa7.94□□□□□ -1.14
UPF1-205ENST00000598209 C2orf91Q6ZV80 131 aa7.94□□□□□ -1.14
UPF1-205ENST00000598209 SPINK1P00995 79 aa7.93□□□□□ -1.14
UPF1-205ENST00000598209 DEFB105AQ8NG35 78 aa7.93□□□□□ -1.14
UPF1-205ENST00000598209 VAMP3Q15836 100 aa7.92□□□□□ -1.14
UPF1-205ENST00000598209 NHP2Q9NX24 153 aaKnown RBP7.92□□□□□ -1.14
UPF1-205ENST00000598209 LAMTOR3Q9UHA4 124 aa7.92□□□□□ -1.14
UPF1-205ENST00000598209 TEX49A0A1B0GTD5 131 aa7.91□□□□□ -1.14
UPF1-205ENST00000598209 IGLV5-48A0A075B6I7 105 aa7.89□□□□□ -1.15
UPF1-205ENST00000598209 SLC25A20O43772 301 aa7.89□□□□□ -1.15
UPF1-205ENST00000598209 CFC1BP0CG36 223 aa7.89□□□□□ -1.15
UPF1-205ENST00000598209 CFC1P0CG37 223 aa7.89□□□□□ -1.15
UPF1-205ENST00000598209 LINC01547P58512 204 aaPredicted RBP7.89□□□□□ -1.15
UPF1-205ENST00000598209 Q1RN00 199 aa7.89□□□□□ -1.15
UPF1-205ENST00000598209 LINC00575Q6W349 94 aa7.89□□□□□ -1.15
UPF1-205ENST00000598209 IGLV7-46A0A075B6I9 117 aa7.88□□□□□ -1.15
UPF1-205ENST00000598209 RPS29P62273 56 aaKnown RBP7.88□□□□□ -1.15
UPF1-205ENST00000598209 RAB37Q96AX2 223 aa7.88□□□□□ -1.15
UPF1-205ENST00000598209 A0A0B4J2C4 111 aa7.87□□□□□ -1.15
UPF1-205ENST00000598209 H7C2G1 150 aa7.87□□□□□ -1.15
UPF1-205ENST00000598209 CEND1Q8N111 149 aa7.87□□□□□ -1.15
UPF1-205ENST00000598209 SMIM29Q86T20 159 aa7.86□□□□□ -1.15
UPF1-205ENST00000598209 hADV29S1A0JD25 119 aa7.85□□□□□ -1.15
UPF1-205ENST00000598209 BVES-AS1Q5T3Y7 98 aa7.85□□□□□ -1.15
UPF1-205ENST00000598209 FP248Q71RG6 208 aaPredicted RBP7.85□□□□□ -1.15
UPF1-205ENST00000598209 Q8N377 158 aa7.85□□□□□ -1.15
UPF1-205ENST00000598209 TMEM238LA0A1B0GVL6 79 aa7.84□□□□□ -1.15
UPF1-205ENST00000598209 A6NJY4 79 aa7.84□□□□□ -1.15
UPF1-205ENST00000598209 TPRXLQ17RH7 258 aa7.84□□□□□ -1.15
UPF1-205ENST00000598209 FXYD2P54710 66 aa7.83□□□□□ -1.16
UPF1-205ENST00000598209 HRCT1Q6UXD1 115 aa7.83□□□□□ -1.16
UPF1-205ENST00000598209 Q6ZQY7 126 aa7.83□□□□□ -1.16
UPF1-205ENST00000598209 PRO1933Q9H354 126 aa7.83□□□□□ -1.16
UPF1-205ENST00000598209 HSD52Q0P140 79 aa7.81□□□□□ -1.16
UPF1-205ENST00000598209 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.8□□□□□ -1.16
UPF1-205ENST00000598209 CDIP1Q9H305 208 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 96.3 ms