RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 Q6ZQT0 140 aa10.27□□□□□ -0.77
UPF1-204ENST00000596842 FAM30AQ9NZY2 134 aa10.26□□□□□ -0.77
UPF1-204ENST00000596842 IGHV4-30-4P0DP06 118 aa10.26□□□□□ -0.77
UPF1-204ENST00000596842 ESRGQ1W209 222 aa10.26□□□□□ -0.77
UPF1-204ENST00000596842 Q6ZVQ6 151 aa10.26□□□□□ -0.77
UPF1-204ENST00000596842 Q8NAQ8 132 aa10.25□□□□□ -0.77
UPF1-204ENST00000596842 ZNF73O43830 326 aaPredicted RBP10.25□□□□□ -0.77
UPF1-204ENST00000596842 LINC00167Q96N53 147 aa10.25□□□□□ -0.77
UPF1-204ENST00000596842 HIGD2AQ9BW72 106 aa10.25□□□□□ -0.77
UPF1-204ENST00000596842 COX7BP24311 80 aa10.24□□□□□ -0.77
UPF1-204ENST00000596842 IGKV2D-24A0A075B6R9 120 aa10.24□□□□□ -0.77
UPF1-204ENST00000596842 FAM229BQ4G0N7 80 aa10.23□□□□□ -0.77
UPF1-204ENST00000596842 TENM3Q9P273 2699 aa10.23□□□□□ -0.77
UPF1-204ENST00000596842 CHKB-CPT1BH3BT56 60 aa10.22□□□□□ -0.77
UPF1-204ENST00000596842 J3QKU1 62 aa10.22□□□□□ -0.77
UPF1-204ENST00000596842 OXLD1Q5BKU9 147 aa10.22□□□□□ -0.77
UPF1-204ENST00000596842 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.21□□□□□ -0.77
UPF1-204ENST00000596842 NDUFC1O43677 76 aa10.21□□□□□ -0.77
UPF1-204ENST00000596842 IGLV6-57P01721 117 aa10.21□□□□□ -0.77
UPF1-204ENST00000596842 Q6ZRU5 148 aa10.21□□□□□ -0.77
UPF1-204ENST00000596842 MUC7Q8TAX7 377 aa10.21□□□□□ -0.78
UPF1-204ENST00000596842 KPRPQ5T749 579 aaPredicted RBP10.2□□□□□ -0.78
UPF1-204ENST00000596842 NBEAL1Q6ZS30 2694 aa10.2□□□□□ -0.78
UPF1-204ENST00000596842 FBN1P35555 2871 aaKnown RBP10.2□□□□□ -0.78
UPF1-204ENST00000596842 PRYO14603 147 aa10.19□□□□□ -0.78
UPF1-204ENST00000596842 A0A0J9YWU9 116 aa10.19□□□□□ -0.78
UPF1-204ENST00000596842 Q6ZTC4 211 aa10.19□□□□□ -0.78
UPF1-204ENST00000596842 COL6A5A8TX70 2615 aa10.19□□□□□ -0.78
UPF1-204ENST00000596842 PRR34Q9NV39 138 aa10.15□□□□□ -0.78
UPF1-204ENST00000596842 RPL37AP8A6NKH3 93 aa10.14□□□□□ -0.79
UPF1-204ENST00000596842 NKAPP1Q8N9T2 125 aa10.14□□□□□ -0.79
UPF1-204ENST00000596842 LOC110117498A0A087WWA1 95 aa10.13□□□□□ -0.79
UPF1-204ENST00000596842 A6NED7 52 aa10.13□□□□□ -0.79
UPF1-204ENST00000596842 KLKP1Q107X0 134 aa10.13□□□□□ -0.79
UPF1-204ENST00000596842 A8MUN3 132 aa10.12□□□□□ -0.79
UPF1-204ENST00000596842 VPREB1P12018 145 aa10.12□□□□□ -0.79
UPF1-204ENST00000596842 ATP5EP56381 51 aaPredicted RBP10.12□□□□□ -0.79
UPF1-204ENST00000596842 DEFB116Q30KQ4 102 aa10.11□□□□□ -0.79
UPF1-204ENST00000596842 Q6ZRP5 223 aa10.11□□□□□ -0.79
UPF1-204ENST00000596842 M0R378 163 aa10.1□□□□□ -0.79
UPF1-204ENST00000596842 ELOF1P60002 83 aaKnown RBP10.1□□□□□ -0.79
UPF1-204ENST00000596842 PDE6GP18545 87 aa10.08□□□□□ -0.8
UPF1-204ENST00000596842 C15orf56Q8N910 161 aa10.08□□□□□ -0.8
UPF1-204ENST00000596842 EGFEM1PQ0D2K5 195 aa10.07□□□□□ -0.8
UPF1-204ENST00000596842 PRR15LQ9BU68 103 aa10.07□□□□□ -0.8
UPF1-204ENST00000596842 SYCNQ0VAF6 134 aa10.07□□□□□ -0.8
UPF1-204ENST00000596842 DEFB131BA0A096LNP1 70 aa10.05□□□□□ -0.8
UPF1-204ENST00000596842 GVQW2A0A096LPI5 108 aaPredicted RBP10.05□□□□□ -0.8
UPF1-204ENST00000596842 TRBV7-4A0A0J9YYF1 115 aa10.05□□□□□ -0.8
UPF1-204ENST00000596842 SERTAD4-AS1Q5TG53 156 aa10.05□□□□□ -0.8
UPF1-204ENST00000596842 FAM168BA1KXE4 195 aa10.04□□□□□ -0.8
UPF1-204ENST00000596842 LINC00528Q8N1L1 170 aa10.03□□□□□ -0.8
UPF1-204ENST00000596842 CXCL6P80162 114 aa10.03□□□□□ -0.8
UPF1-204ENST00000596842 WFDC13Q8IUB5 93 aa10.02□□□□□ -0.8
UPF1-204ENST00000596842 CD164Q04900 197 aa10.01□□□□□ -0.81
UPF1-204ENST00000596842 C7orf33Q8WU49 177 aa10.01□□□□□ -0.81
UPF1-204ENST00000596842 MGAM2Q2M2H8 2515 aa10.01□□□□□ -0.81
UPF1-204ENST00000596842 SMIM29Q86T20 159 aa10.01□□□□□ -0.81
UPF1-204ENST00000596842 C11orf45Q8TAV5 145 aa10□□□□□ -0.81
UPF1-204ENST00000596842 ST20-AS1Q8NBB2 130 aa10□□□□□ -0.81
UPF1-204ENST00000596842 KRTAP10-11P60412 298 aa10□□□□□ -0.81
UPF1-204ENST00000596842 C1orf64Q8NEQ6 169 aa10□□□□□ -0.81
UPF1-204ENST00000596842 ETDCA0A1B0GVM5 59 aa9.99□□□□□ -0.81
UPF1-204ENST00000596842 UBE2BP63146 152 aa9.99□□□□□ -0.81
UPF1-204ENST00000596842 A0A0G2JQZ4 141 aa9.99□□□□□ -0.81
UPF1-204ENST00000596842 A0A1W2PNN7 141 aa9.99□□□□□ -0.81
UPF1-204ENST00000596842 CASC10Q5T4H9 136 aa9.98□□□□□ -0.81
UPF1-204ENST00000596842 KMT2BQ9UMN6 2715 aaPredicted RBP9.98□□□□□ -0.81
UPF1-204ENST00000596842 TRAV22A0A0B4J277 110 aa9.98□□□□□ -0.81
UPF1-204ENST00000596842 H3BQ85 93 aa9.98□□□□□ -0.81
UPF1-204ENST00000596842 A8MU10 97 aa9.97□□□□□ -0.81
UPF1-204ENST00000596842 KRTAP26-1Q6PEX3 210 aa9.97□□□□□ -0.81
UPF1-204ENST00000596842 Q8N377 158 aa9.96□□□□□ -0.82
UPF1-204ENST00000596842 MP68P56378 58 aa9.95□□□□□ -0.82
UPF1-204ENST00000596842 LINC00208Q96KT6 92 aa9.95□□□□□ -0.82
UPF1-204ENST00000596842 IGKV2-24A0A0C4DH68 120 aa9.94□□□□□ -0.82
UPF1-204ENST00000596842 CSMD3Q7Z407 3707 aa9.94□□□□□ -0.82
UPF1-204ENST00000596842 RBM12B-AS1Q9P1G2 102 aa9.94□□□□□ -0.82
UPF1-204ENST00000596842 HCG22E2RYF7 251 aa9.93□□□□□ -0.82
UPF1-204ENST00000596842 IGKV4-1P06312 121 aa9.93□□□□□ -0.82
UPF1-204ENST00000596842 C4orf48Q5BLP8 95 aa9.92□□□□□ -0.82
UPF1-204ENST00000596842 C1orf137Q5JT78 98 aa9.92□□□□□ -0.82
UPF1-204ENST00000596842 UBE2AP49459 152 aa9.9□□□□□ -0.82
UPF1-204ENST00000596842 LINC01556Q5JQF7 62 aa9.9□□□□□ -0.82
UPF1-204ENST00000596842 CMYA5Q8N3K9 4069 aa9.9□□□□□ -0.82
UPF1-204ENST00000596842 ANK2Q01484 3957 aa9.9□□□□□ -0.82
UPF1-204ENST00000596842 ERC2-IT1O76042 136 aa9.89□□□□□ -0.83
UPF1-204ENST00000596842 PRR15Q8IV56 129 aa9.89□□□□□ -0.83
UPF1-204ENST00000596842 Q9BRP9 147 aa9.89□□□□□ -0.83
UPF1-204ENST00000596842 SRRM2Q9UQ35 2752 aaKnown RBP9.89□□□□□ -0.83
UPF1-204ENST00000596842 KCNQ1DNQ9H478 68 aa9.88□□□□□ -0.83
UPF1-204ENST00000596842 STAB2Q8WWQ8 2551 aa9.87□□□□□ -0.83
UPF1-204ENST00000596842 Q6ZRX8 168 aa9.87□□□□□ -0.83
UPF1-204ENST00000596842 A0A1W2PNM2 257 aa9.86□□□□□ -0.83
UPF1-204ENST00000596842 TENM2Q9NT68 2774 aa9.86□□□□□ -0.83
UPF1-204ENST00000596842 BCE1O60756 84 aa9.86□□□□□ -0.83
UPF1-204ENST00000596842 PRLHP81277 87 aa9.85□□□□□ -0.83
UPF1-204ENST00000596842 LINC00588Q9Y4M8 146 aa9.85□□□□□ -0.83
UPF1-204ENST00000596842 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.85□□□□□ -0.83
UPF1-204ENST00000596842 A0A096LNI7 61 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms