RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 REG3GQ6UW15 175 aa6.67□□□□□ -1.34
LIG3-216ENST00000593099 UTP20O75691 2785 aaKnown RBP6.67□□□□□ -1.34
LIG3-216ENST00000593099 RTL8CO15255 209 aa6.67□□□□□ -1.34
LIG3-216ENST00000593099 SLPIP03973 132 aa6.67□□□□□ -1.34
LIG3-216ENST00000593099 C1orf137Q5JT78 98 aa6.67□□□□□ -1.34
LIG3-216ENST00000593099 LINC00208Q96KT6 92 aa6.67□□□□□ -1.34
LIG3-216ENST00000593099 RBM12B-AS1Q9P1G2 102 aa6.67□□□□□ -1.34
LIG3-216ENST00000593099 Q6ZQY7 126 aa6.66□□□□□ -1.34
LIG3-216ENST00000593099 hDV103S1A0JD37 113 aa6.66□□□□□ -1.34
LIG3-216ENST00000593099 NBEAL1Q6ZS30 2694 aa6.66□□□□□ -1.34
LIG3-216ENST00000593099 SMIM11BQ8TCY0 68 aa6.66□□□□□ -1.34
LIG3-216ENST00000593099 DNAH14Q0VDD8 3507 aa6.66□□□□□ -1.34
LIG3-216ENST00000593099 TACC2O95359 2948 aa6.65□□□□□ -1.34
LIG3-216ENST00000593099 ATP11AUNQ6ZP68 121 aa6.65□□□□□ -1.34
LIG3-216ENST00000593099 IGLV5-45A0A087WSX0 123 aa6.65□□□□□ -1.35
LIG3-216ENST00000593099 ADGRG4Q8IZF6 3080 aa6.65□□□□□ -1.35
LIG3-216ENST00000593099 ZZEF1O43149 2961 aa6.64□□□□□ -1.35
LIG3-216ENST00000593099 PRR3P79522 188 aaKnown RBP6.64□□□□□ -1.35
LIG3-216ENST00000593099 NSD1Q96L73 2696 aaPredicted RBP6.64□□□□□ -1.35
LIG3-216ENST00000593099 WFDC13Q8IUB5 93 aa6.64□□□□□ -1.35
LIG3-216ENST00000593099 C6orf48Q9UBA6 75 aa6.64□□□□□ -1.35
LIG3-216ENST00000593099 GVQW2A0A096LPI5 108 aaPredicted RBP6.63□□□□□ -1.35
LIG3-216ENST00000593099 ADAMTSL4-AS1Q5T5F5 129 aa6.63□□□□□ -1.35
LIG3-216ENST00000593099 C22orf24Q9Y442 160 aa6.63□□□□□ -1.35
LIG3-216ENST00000593099 KRTAP21-3Q3LHN1 58 aa6.62□□□□□ -1.35
LIG3-216ENST00000593099 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.62□□□□□ -1.35
LIG3-216ENST00000593099 FAM229AH3BQW9 127 aa6.61□□□□□ -1.35
LIG3-216ENST00000593099 PRR34Q9NV39 138 aa6.61□□□□□ -1.35
LIG3-216ENST00000593099 BCE1O60756 84 aa6.61□□□□□ -1.35
LIG3-216ENST00000593099 C10orf25Q5T742 122 aa6.61□□□□□ -1.35
LIG3-216ENST00000593099 CYP4F30PQ9H0H9 118 aa6.61□□□□□ -1.35
LIG3-216ENST00000593099 IGLV9-49A0A0B4J1Y8 123 aa6.6□□□□□ -1.35
LIG3-216ENST00000593099 USP34Q70CQ2 3546 aa6.6□□□□□ -1.35
LIG3-216ENST00000593099 A8MUN3 132 aa6.59□□□□□ -1.35
LIG3-216ENST00000593099 LINC00476Q8WZB0 136 aa6.59□□□□□ -1.35
LIG3-216ENST00000593099 KMT2BQ9UMN6 2715 aaPredicted RBP6.58□□□□□ -1.36
LIG3-216ENST00000593099 CASC10Q5T4H9 136 aa6.58□□□□□ -1.36
LIG3-216ENST00000593099 PRR15Q8IV56 129 aa6.58□□□□□ -1.36
LIG3-216ENST00000593099 A0A087WTM6 91 aa6.58□□□□□ -1.36
LIG3-216ENST00000593099 LINC00167Q96N53 147 aa6.57□□□□□ -1.36
LIG3-216ENST00000593099 PRLHP81277 87 aa6.55□□□□□ -1.36
LIG3-216ENST00000593099 LINC00846Q9NV44 126 aa6.55□□□□□ -1.36
LIG3-216ENST00000593099 LINC01554Q52M75 96 aa6.55□□□□□ -1.36
LIG3-216ENST00000593099 CHTF8P0CG12 524 aa6.54□□□□□ -1.36
LIG3-216ENST00000593099 Q6ZRP5 223 aa6.54□□□□□ -1.36
LIG3-216ENST00000593099 SPINK6Q6UWN8 80 aa6.54□□□□□ -1.36
LIG3-216ENST00000593099 PHF5AQ7RTV0 110 aaKnown RBP6.53□□□□□ -1.36
LIG3-216ENST00000593099 A0A1B0GU69 56 aa6.53□□□□□ -1.36
LIG3-216ENST00000593099 CIRBP-AS1Q8TBR5 109 aa6.53□□□□□ -1.36
LIG3-216ENST00000593099 LINC00337Q8N6G1 96 aa6.53□□□□□ -1.36
LIG3-216ENST00000593099 Q8N814 137 aa6.53□□□□□ -1.36
LIG3-216ENST00000593099 SMCR5Q8TEV8 140 aa6.53□□□□□ -1.36
LIG3-216ENST00000593099 SSBP3-AS1Q7Z2R9 100 aa6.52□□□□□ -1.37
LIG3-216ENST00000593099 ZNF575Q86XF7 245 aa6.52□□□□□ -1.37
LIG3-216ENST00000593099 PLA2G1BP04054 148 aaKnown RBP6.51□□□□□ -1.37
LIG3-216ENST00000593099 C15orf56Q8N910 161 aa6.51□□□□□ -1.37
LIG3-216ENST00000593099 Q9BRP9 147 aa6.51□□□□□ -1.37
LIG3-216ENST00000593099 LRBAP50851 2863 aa6.51□□□□□ -1.37
LIG3-216ENST00000593099 A0A087WYN8 130 aa6.51□□□□□ -1.37
LIG3-216ENST00000593099 C9orf163Q8N9P6 203 aa6.51□□□□□ -1.37
LIG3-216ENST00000593099 SPEGQ15772 3267 aa6.51□□□□□ -1.37
LIG3-216ENST00000593099 PCOTHQ58A44 107 aa6.5□□□□□ -1.37
LIG3-216ENST00000593099 PRO0461Q9UI25 63 aa6.5□□□□□ -1.37
LIG3-216ENST00000593099 SMCPP49901 116 aaPredicted RBP6.5□□□□□ -1.37
LIG3-216ENST00000593099 TENM4Q6N022 2769 aa6.49□□□□□ -1.37
LIG3-216ENST00000593099 LOC400499M0QZD8 3231 aa6.49□□□□□ -1.37
LIG3-216ENST00000593099 LINC00575Q6W349 94 aa6.49□□□□□ -1.37
LIG3-216ENST00000593099 A0A0A0MQY5 61 aa6.49□□□□□ -1.37
LIG3-216ENST00000593099 ZANQ9Y493 2812 aa6.48□□□□□ -1.37
LIG3-216ENST00000593099 H0Y9P7 68 aa6.48□□□□□ -1.37
LIG3-216ENST00000593099 LINC01547P58512 204 aaPredicted RBP6.48□□□□□ -1.37
LIG3-216ENST00000593099 KIAA0087Q14695 138 aa6.48□□□□□ -1.37
LIG3-216ENST00000593099 RPL37AP61513 92 aaKnown RBP6.47□□□□□ -1.37
LIG3-216ENST00000593099 LOC101927531A0A1B0GV80 90 aa6.46□□□□□ -1.37
LIG3-216ENST00000593099 ERC2-IT1O76042 136 aa6.46□□□□□ -1.37
LIG3-216ENST00000593099 TNP2Q05952 138 aa6.46□□□□□ -1.38
LIG3-216ENST00000593099 TRAV22A0A0B4J277 110 aa6.46□□□□□ -1.38
LIG3-216ENST00000593099 CNBPP62633 177 aaKnown RBP6.45□□□□□ -1.38
LIG3-216ENST00000593099 CFAP47Q6ZTR5 3102 aa6.44□□□□□ -1.38
LIG3-216ENST00000593099 FAM168BA1KXE4 195 aa6.43□□□□□ -1.38
LIG3-216ENST00000593099 EPM2AB3EWF7 344 aa6.43□□□□□ -1.38
LIG3-216ENST00000593099 TLX1NBP0CAT3 122 aa6.43□□□□□ -1.38
LIG3-216ENST00000593099 ASH1LQ9NR48 2969 aaKnown RBP6.43□□□□□ -1.38
LIG3-216ENST00000593099 CELSR2Q9HCU4 2923 aa6.43□□□□□ -1.38
LIG3-216ENST00000593099 NBEAL2Q6ZNJ1 2754 aa6.43□□□□□ -1.38
LIG3-216ENST00000593099 Q6ZRX8 168 aa6.43□□□□□ -1.38
LIG3-216ENST00000593099 MYO15AQ9UKN7 3530 aa6.42□□□□□ -1.38
LIG3-216ENST00000593099 C1orf64Q8NEQ6 169 aa6.42□□□□□ -1.38
LIG3-216ENST00000593099 LCE6AA0A183 80 aa6.41□□□□□ -1.38
LIG3-216ENST00000593099 MUC3AQ02505 3323 aa6.41□□□□□ -1.38
LIG3-216ENST00000593099 ELOF1P60002 83 aaKnown RBP6.41□□□□□ -1.38
LIG3-216ENST00000593099 HRNRQ86YZ3 2850 aaPredicted RBP6.41□□□□□ -1.38
LIG3-216ENST00000593099 SMR3BP02814 79 aaPredicted RBP6.41□□□□□ -1.38
LIG3-216ENST00000593099 MOBPQ13875 183 aa6.4□□□□□ -1.38
LIG3-216ENST00000593099 J3QL48 77 aa6.4□□□□□ -1.39
LIG3-216ENST00000593099 KLKP1Q107X0 134 aa6.4□□□□□ -1.39
LIG3-216ENST00000593099 NIPBLQ6KC79 2804 aaeCLIP6.39□□□□□ -1.39
LIG3-216ENST00000593099 A0A087WSZ3 146 aa6.39□□□□□ -1.39
LIG3-216ENST00000593099 TYMSOSQ8TAI1 123 aa6.39□□□□□ -1.39
LIG3-216ENST00000593099 LITAFQ99732 161 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms