RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 C4orf48Q5BLP8 95 aa6.14□□□□□ -1.43
LIG3-212ENST00000590181 LINC00518Q8N0U6 118 aa6.14□□□□□ -1.43
LIG3-212ENST00000590181 PMCHL2Q9BQD1 86 aa6.14□□□□□ -1.43
LIG3-212ENST00000590181 Q6ZVH6 145 aa6.13□□□□□ -1.43
LIG3-212ENST00000590181 SPANXCQ9NY87 97 aa6.13□□□□□ -1.43
LIG3-212ENST00000590181 B5MCH6 92 aa6.12□□□□□ -1.43
LIG3-212ENST00000590181 LINC00483Q53H64 154 aa6.12□□□□□ -1.43
LIG3-212ENST00000590181 Q6ZRX8 168 aa6.12□□□□□ -1.43
LIG3-212ENST00000590181 SMCR5Q8TEV8 140 aa6.12□□□□□ -1.43
LIG3-212ENST00000590181 TSPAN13O95857 204 aa6.11□□□□□ -1.43
LIG3-212ENST00000590181 S100A1P23297 94 aa6.11□□□□□ -1.43
LIG3-212ENST00000590181 SSBP3-AS1Q7Z2R9 100 aa6.11□□□□□ -1.43
LIG3-212ENST00000590181 DAND5Q8N907 189 aa6.11□□□□□ -1.43
LIG3-212ENST00000590181 TRAV23DV6A0A075B6W5 121 aa6.1□□□□□ -1.43
LIG3-212ENST00000590181 ZNF815PA8K554 130 aa6.1□□□□□ -1.43
LIG3-212ENST00000590181 SPINK1P00995 79 aa6.1□□□□□ -1.43
LIG3-212ENST00000590181 C3orf79P0CE67 100 aa6.1□□□□□ -1.43
LIG3-212ENST00000590181 IFITM1P13164 125 aa6.1□□□□□ -1.43
LIG3-212ENST00000590181 RPS29P62273 56 aaKnown RBP6.1□□□□□ -1.43
LIG3-212ENST00000590181 LCE2AQ5TA79 106 aaPredicted RBP6.1□□□□□ -1.43
LIG3-212ENST00000590181 SLC25A34Q6PIV7 304 aa6.1□□□□□ -1.43
LIG3-212ENST00000590181 SPANXDQ9BXN6 97 aa6.1□□□□□ -1.43
LIG3-212ENST00000590181 ANAPC11Q9NYG5 84 aa6.1□□□□□ -1.43
LIG3-212ENST00000590181 ZNF73O43830 326 aaPredicted RBP6.09□□□□□ -1.43
LIG3-212ENST00000590181 ADAMTSL4-AS1Q5T5F5 129 aa6.09□□□□□ -1.43
LIG3-212ENST00000590181 FP248Q71RG6 208 aaPredicted RBP6.09□□□□□ -1.43
LIG3-212ENST00000590181 LINC00308Q8TCZ7 52 aa6.09□□□□□ -1.43
LIG3-212ENST00000590181 KRTDAPP60985 99 aa6.08□□□□□ -1.44
LIG3-212ENST00000590181 LITAFQ99732 161 aa6.08□□□□□ -1.44
LIG3-212ENST00000590181 DHRS4-AS1Q9P1J3 65 aa6.08□□□□□ -1.44
LIG3-212ENST00000590181 TRBV7-6A0A0J9YX20 115 aa6.07□□□□□ -1.44
LIG3-212ENST00000590181 TPRXLQ17RH7 258 aa6.07□□□□□ -1.44
LIG3-212ENST00000590181 SCGB1D4Q6XE38 83 aa6.07□□□□□ -1.44
LIG3-212ENST00000590181 A4D1N5 150 aa6.05□□□□□ -1.44
LIG3-212ENST00000590181 GAGE2AQ6NT46 116 aa6.05□□□□□ -1.44
LIG3-212ENST00000590181 SOSTDC1Q6X4U4 206 aa6.05□□□□□ -1.44
LIG3-212ENST00000590181 C3orf22Q8N5N4 141 aa6.05□□□□□ -1.44
LIG3-212ENST00000590181 OR13C6PQ8NH95 151 aa6.05□□□□□ -1.44
LIG3-212ENST00000590181 Q9BRP9 147 aa6.05□□□□□ -1.44
LIG3-212ENST00000590181 MUC17Q685J3 4493 aa6.05□□□□□ -1.44
LIG3-212ENST00000590181 S100A2P29034 98 aa6.04□□□□□ -1.44
LIG3-212ENST00000590181 Q8NBF4 154 aa6.04□□□□□ -1.44
LIG3-212ENST00000590181 IGLV7-46A0A075B6I9 117 aa6.03□□□□□ -1.44
LIG3-212ENST00000590181 HSBP1L1C9JCN9 74 aa6.03□□□□□ -1.44
LIG3-212ENST00000590181 SLC25A20O43772 301 aa6.02□□□□□ -1.45
LIG3-212ENST00000590181 S100A6P06703 90 aa6.02□□□□□ -1.45
LIG3-212ENST00000590181 SPRR1BP22528 89 aa6.02□□□□□ -1.45
LIG3-212ENST00000590181 NPC2P61916 151 aa6.02□□□□□ -1.45
LIG3-212ENST00000590181 TRAV13-2A0A0B4J235 113 aa6.01□□□□□ -1.45
LIG3-212ENST00000590181 A0A1B0GWB2 263 aa6.01□□□□□ -1.45
LIG3-212ENST00000590181 EIF4EBP3O60516 100 aaPredicted RBP6.01□□□□□ -1.45
LIG3-212ENST00000590181 ERC2-IT1O76042 136 aa6.01□□□□□ -1.45
LIG3-212ENST00000590181 ELOF1P60002 83 aaKnown RBP6.01□□□□□ -1.45
LIG3-212ENST00000590181 CDIP1Q9H305 208 aa6.01□□□□□ -1.45
LIG3-212ENST00000590181 NHP2Q9NX24 153 aaKnown RBP6.01□□□□□ -1.45
LIG3-212ENST00000590181 COX7BP24311 80 aa6□□□□□ -1.45
LIG3-212ENST00000590181 LAMTOR3Q9UHA4 124 aa6□□□□□ -1.45
LIG3-212ENST00000590181 MOBPQ13875 183 aa5.99□□□□□ -1.45
LIG3-212ENST00000590181 HIST3H2BBQ8N257 126 aa5.99□□□□□ -1.45
LIG3-212ENST00000590181 IGLV9-49A0A0B4J1Y8 123 aa5.98□□□□□ -1.45
LIG3-212ENST00000590181 VAMP3Q15836 100 aa5.98□□□□□ -1.45
LIG3-212ENST00000590181 C6orf99Q4VX62 202 aa5.98□□□□□ -1.45
LIG3-212ENST00000590181 ANKRD39Q53RE8 183 aa5.98□□□□□ -1.45
LIG3-212ENST00000590181 HIST1H2BLQ99880 126 aa5.98□□□□□ -1.45
LIG3-212ENST00000590181 TEX49A0A1B0GTD5 131 aa5.97□□□□□ -1.45
LIG3-212ENST00000590181 A6NDN8 102 aa5.97□□□□□ -1.45
LIG3-212ENST00000590181 CD164Q04900 197 aa5.97□□□□□ -1.45
LIG3-212ENST00000590181 MUSTN1Q8IVN3 82 aa5.97□□□□□ -1.45
LIG3-212ENST00000590181 LIMD2Q9BT23 127 aa5.97□□□□□ -1.45
LIG3-212ENST00000590181 TTTY13Q9BZ97 58 aa5.97□□□□□ -1.45
LIG3-212ENST00000590181 TAL2Q16559 108 aa5.96□□□□□ -1.46
LIG3-212ENST00000590181 C9orf153Q5TBE3 101 aa5.96□□□□□ -1.46
LIG3-212ENST00000590181 RETNLBQ9BQ08 111 aa5.96□□□□□ -1.46
LIG3-212ENST00000590181 PCP2Q8IVA1 136 aa5.95□□□□□ -1.46
LIG3-212ENST00000590181 ATOH7Q8N100 152 aa5.95□□□□□ -1.46
LIG3-212ENST00000590181 Q8N377 158 aa5.95□□□□□ -1.46
LIG3-212ENST00000590181 PRO1933Q9H354 126 aa5.94□□□□□ -1.46
LIG3-212ENST00000590181 ST20-AS1Q8NBB2 130 aa5.93□□□□□ -1.46
LIG3-212ENST00000590181 IGLV5-48A0A075B6I7 105 aa5.92□□□□□ -1.46
LIG3-212ENST00000590181 SNCGO76070 127 aa5.92□□□□□ -1.46
LIG3-212ENST00000590181 KRTAP13-3Q3SY46 172 aa5.92□□□□□ -1.46
LIG3-212ENST00000590181 Q5XG85 94 aa5.92□□□□□ -1.46
LIG3-212ENST00000590181 DLEU1O43261 78 aa5.91□□□□□ -1.46
LIG3-212ENST00000590181 SCGB1D1O95968 90 aa5.91□□□□□ -1.46
LIG3-212ENST00000590181 SEC61BP60468 96 aaKnown RBP5.9□□□□□ -1.46
LIG3-212ENST00000590181 SMIM11BQ8TCY0 68 aa5.9□□□□□ -1.46
LIG3-212ENST00000590181 PPDPFLQ8WWR9 84 aa5.9□□□□□ -1.46
LIG3-212ENST00000590181 FSIP2Q5CZC0 6907 aa5.89□□□□□ -1.47
LIG3-212ENST00000590181 H7C2G1 150 aa5.89□□□□□ -1.47
LIG3-212ENST00000590181 COX8AP10176 69 aa5.89□□□□□ -1.47
LIG3-212ENST00000590181 BVES-AS1Q5T3Y7 98 aa5.89□□□□□ -1.47
LIG3-212ENST00000590181 GHRHP01286 108 aa5.88□□□□□ -1.47
LIG3-212ENST00000590181 ASB16-AS1Q495Z4 193 aa5.88□□□□□ -1.47
LIG3-212ENST00000590181 DEFB105AQ8NG35 78 aa5.88□□□□□ -1.47
LIG3-212ENST00000590181 HIST1H4GQ99525 98 aa5.88□□□□□ -1.47
LIG3-212ENST00000590181 F8WEM9 126 aa5.87□□□□□ -1.47
LIG3-212ENST00000590181 LINC00575Q6W349 94 aa5.87□□□□□ -1.47
LIG3-212ENST00000590181 HIGD1BQ9P298 99 aa5.87□□□□□ -1.47
LIG3-212ENST00000590181 CRCT1Q9UGL9 99 aa5.87□□□□□ -1.47
LIG3-212ENST00000590181 hADV29S1A0JD25 119 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms