RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 A0A1W2PNN7 141 aa6.61□□□□□ -1.35
VPS4B-204ENST00000589604 M0R378 163 aa6.61□□□□□ -1.35
VPS4B-204ENST00000589604 CHTF8P0CG12 524 aa6.61□□□□□ -1.35
VPS4B-204ENST00000589604 VAMP3Q15836 100 aa6.61□□□□□ -1.35
VPS4B-204ENST00000589604 Q1RN00 199 aa6.61□□□□□ -1.35
VPS4B-204ENST00000589604 RYR1P21817 5038 aa6.61□□□□□ -1.35
VPS4B-204ENST00000589604 TRBV10-3A0A0K0K1G6 114 aa6.61□□□□□ -1.35
VPS4B-204ENST00000589604 TMEM126AQ9H061 195 aa6.61□□□□□ -1.35
VPS4B-204ENST00000589604 IGKV2-24A0A0C4DH68 120 aa6.6□□□□□ -1.35
VPS4B-204ENST00000589604 K7EP34 96 aa6.6□□□□□ -1.35
VPS4B-204ENST00000589604 LORP23490 312 aaPredicted RBP6.6□□□□□ -1.35
VPS4B-204ENST00000589604 PSMB2P49721 201 aa6.6□□□□□ -1.35
VPS4B-204ENST00000589604 C7orf33Q8WU49 177 aa6.6□□□□□ -1.35
VPS4B-204ENST00000589604 SPCS1Q9Y6A9 102 aa6.6□□□□□ -1.35
VPS4B-204ENST00000589604 TCL1BO95988 128 aa6.59□□□□□ -1.35
VPS4B-204ENST00000589604 XGP55808 180 aa6.59□□□□□ -1.35
VPS4B-204ENST00000589604 Q6ZSA8 131 aa6.59□□□□□ -1.35
VPS4B-204ENST00000589604 C22orf24Q9Y442 160 aa6.59□□□□□ -1.35
VPS4B-204ENST00000589604 EPM2AB3EWF7 344 aa6.58□□□□□ -1.36
VPS4B-204ENST00000589604 S100A7L2Q5SY68 101 aa6.58□□□□□ -1.36
VPS4B-204ENST00000589604 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.58□□□□□ -1.36
VPS4B-204ENST00000589604 SCGB1C2P0DMR2 95 aa6.58□□□□□ -1.36
VPS4B-204ENST00000589604 FAM19A5Q7Z5A7 132 aaPredicted RBP6.58□□□□□ -1.36
VPS4B-204ENST00000589604 CLEC2BQ92478 149 aa6.58□□□□□ -1.36
VPS4B-204ENST00000589604 NKAPP1Q8N9T2 125 aa6.57□□□□□ -1.36
VPS4B-204ENST00000589604 SPACA4Q8TDM5 124 aa6.57□□□□□ -1.36
VPS4B-204ENST00000589604 FAM218AQ96MZ4 157 aa6.57□□□□□ -1.36
VPS4B-204ENST00000589604 LINC00167Q96N53 147 aa6.57□□□□□ -1.36
VPS4B-204ENST00000589604 PKIGQ9Y2B9 76 aa6.57□□□□□ -1.36
VPS4B-204ENST00000589604 IGLV1-50A0A075B6I6 118 aa6.55□□□□□ -1.36
VPS4B-204ENST00000589604 TRBV20-1A0A075B6N2 111 aa6.55□□□□□ -1.36
VPS4B-204ENST00000589604 H3BMG7 143 aa6.55□□□□□ -1.36
VPS4B-204ENST00000589604 CDK2AP2O75956 126 aa6.55□□□□□ -1.36
VPS4B-204ENST00000589604 COX6CP09669 75 aa6.55□□□□□ -1.36
VPS4B-204ENST00000589604 SEC61GP60059 68 aa6.55□□□□□ -1.36
VPS4B-204ENST00000589604 C6orf99Q4VX62 202 aa6.55□□□□□ -1.36
VPS4B-204ENST00000589604 LYRM7Q5U5X0 104 aa6.55□□□□□ -1.36
VPS4B-204ENST00000589604 GTF2H5Q6ZYL4 71 aa6.55□□□□□ -1.36
VPS4B-204ENST00000589604 MRPL55Q7Z7F7 128 aaKnown RBP6.55□□□□□ -1.36
VPS4B-204ENST00000589604 KCNQ1DNQ9H478 68 aa6.55□□□□□ -1.36
VPS4B-204ENST00000589604 LINC00474Q9P2X8 69 aa6.55□□□□□ -1.36
VPS4B-204ENST00000589604 TRAV23DV6A0A075B6W5 121 aa6.55□□□□□ -1.36
VPS4B-204ENST00000589604 LST1O00453 97 aa6.55□□□□□ -1.36
VPS4B-204ENST00000589604 SCXQ7RTU7 201 aa6.55□□□□□ -1.36
VPS4B-204ENST00000589604 PRO0461Q9UI25 63 aa6.55□□□□□ -1.36
VPS4B-204ENST00000589604 RPL37AP8A6NKH3 93 aa6.54□□□□□ -1.36
VPS4B-204ENST00000589604 M0QXV9 152 aa6.54□□□□□ -1.36
VPS4B-204ENST00000589604 Q75L30 129 aa6.54□□□□□ -1.36
VPS4B-204ENST00000589604 KRTAP11-1Q8IUC1 163 aa6.54□□□□□ -1.36
VPS4B-204ENST00000589604 PCLOQ9Y6V0 5065 aa6.53□□□□□ -1.36
VPS4B-204ENST00000589604 FAT1Q14517 4588 aa6.53□□□□□ -1.36
VPS4B-204ENST00000589604 KRTAP4-16G5E9R7 235 aaPredicted RBP6.53□□□□□ -1.36
VPS4B-204ENST00000589604 H0YGX0 51 aa6.53□□□□□ -1.36
VPS4B-204ENST00000589604 ZNF73O43830 326 aaPredicted RBP6.53□□□□□ -1.36
VPS4B-204ENST00000589604 CIRBP-AS1Q8TBR5 109 aa6.53□□□□□ -1.36
VPS4B-204ENST00000589604 A0A087WYN8 130 aa6.52□□□□□ -1.37
VPS4B-204ENST00000589604 KRTAP23-1A1A580 65 aa6.52□□□□□ -1.37
VPS4B-204ENST00000589604 SPRR1AP35321 89 aa6.52□□□□□ -1.37
VPS4B-204ENST00000589604 ATXN8Q156A1 80 aa6.52□□□□□ -1.37
VPS4B-204ENST00000589604 PHF5AQ7RTV0 110 aaKnown RBP6.52□□□□□ -1.37
VPS4B-204ENST00000589604 SMR3BP02814 79 aaPredicted RBP6.52□□□□□ -1.37
VPS4B-204ENST00000589604 PLAC8Q9NZF1 115 aa6.52□□□□□ -1.37
VPS4B-204ENST00000589604 SRRM2Q9UQ35 2752 aaKnown RBP6.51□□□□□ -1.37
VPS4B-204ENST00000589604 TRBV7-6A0A0J9YX20 115 aa6.51□□□□□ -1.37
VPS4B-204ENST00000589604 MTURNQ8N3F0 131 aa6.51□□□□□ -1.37
VPS4B-204ENST00000589604 DIRC1Q969H9 104 aa6.51□□□□□ -1.37
VPS4B-204ENST00000589604 TRACP01848 142 aa6.5□□□□□ -1.37
VPS4B-204ENST00000589604 ELOF1P60002 83 aaKnown RBP6.5□□□□□ -1.37
VPS4B-204ENST00000589604 LINC00575Q6W349 94 aa6.5□□□□□ -1.37
VPS4B-204ENST00000589604 KRTAP4-5Q9BYR2 181 aa6.5□□□□□ -1.37
VPS4B-204ENST00000589604 CBY1Q9Y3M2 126 aa6.49□□□□□ -1.37
VPS4B-204ENST00000589604 C9JAW5 83 aa6.49□□□□□ -1.37
VPS4B-204ENST00000589604 COX7BP24311 80 aa6.49□□□□□ -1.37
VPS4B-204ENST00000589604 LINC01600Q96MT4 127 aa6.49□□□□□ -1.37
VPS4B-204ENST00000589604 A0A1B0GX51 115 aa6.48□□□□□ -1.37
VPS4B-204ENST00000589604 DPH3Q96FX2 82 aa6.48□□□□□ -1.37
VPS4B-204ENST00000589604 VPS13BQ7Z7G8 4022 aa6.47□□□□□ -1.37
VPS4B-204ENST00000589604 F8W1H4 67 aa6.47□□□□□ -1.37
VPS4B-204ENST00000589604 REG3GQ6UW15 175 aa6.47□□□□□ -1.37
VPS4B-204ENST00000589604 SLC25A20O43772 301 aa6.45□□□□□ -1.38
VPS4B-204ENST00000589604 Q6ZRX8 168 aa6.45□□□□□ -1.38
VPS4B-204ENST00000589604 Q9BRP9 147 aa6.45□□□□□ -1.38
VPS4B-204ENST00000589604 hADV29S1A0JD25 119 aa6.45□□□□□ -1.38
VPS4B-204ENST00000589604 Q8N1X5 172 aa6.45□□□□□ -1.38
VPS4B-204ENST00000589604 KRTAP10-4P60372 401 aaPredicted RBP6.44□□□□□ -1.38
VPS4B-204ENST00000589604 SEC61BP60468 96 aaKnown RBP6.44□□□□□ -1.38
VPS4B-204ENST00000589604 UBE2BP63146 152 aa6.44□□□□□ -1.38
VPS4B-204ENST00000589604 ABCA13Q86UQ4 5058 aa6.44□□□□□ -1.38
VPS4B-204ENST00000589604 ETDCA0A1B0GVM5 59 aa6.43□□□□□ -1.38
VPS4B-204ENST00000589604 H3BT86 120 aa6.43□□□□□ -1.38
VPS4B-204ENST00000589604 BAALC-AS2P0C853 105 aa6.43□□□□□ -1.38
VPS4B-204ENST00000589604 INAFM2P0DMQ5 153 aa6.43□□□□□ -1.38
VPS4B-204ENST00000589604 ANKRD29Q8N6D5 301 aa6.43□□□□□ -1.38
VPS4B-204ENST00000589604 Q5VSD8 79 aa6.42□□□□□ -1.38
VPS4B-204ENST00000589604 KRTAP13-1Q8IUC0 172 aa6.42□□□□□ -1.38
VPS4B-204ENST00000589604 ERC2-IT1O76042 136 aa6.42□□□□□ -1.38
VPS4B-204ENST00000589604 SMCR5Q8TEV8 140 aa6.42□□□□□ -1.38
VPS4B-204ENST00000589604 DNAL4O96015 105 aa6.41□□□□□ -1.38
VPS4B-204ENST00000589604 ETDBQ3ZM63 59 aa6.41□□□□□ -1.38
VPS4B-204ENST00000589604 Q6ZQY7 126 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms