RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 ZNF706Q9Y5V0 76 aaPredicted RBP8.72□□□□□ -1.01
CLIP3-202ENST00000585466 MUC17Q685J3 4493 aa8.72□□□□□ -1.01
CLIP3-202ENST00000585466 KRTDAPP60985 99 aa8.71□□□□□ -1.02
CLIP3-202ENST00000585466 CTAG1AP78358 180 aa8.71□□□□□ -1.02
CLIP3-202ENST00000585466 ZNF815PA8K554 130 aa8.7□□□□□ -1.02
CLIP3-202ENST00000585466 ANKRD39Q53RE8 183 aa8.7□□□□□ -1.02
CLIP3-202ENST00000585466 PPDPFQ9H3Y8 114 aa8.7□□□□□ -1.02
CLIP3-202ENST00000585466 MUC2Q02817 5179 aa8.69□□□□□ -1.02
CLIP3-202ENST00000585466 TRAV23DV6A0A075B6W5 121 aa8.69□□□□□ -1.02
CLIP3-202ENST00000585466 S100A7L2Q5SY68 101 aa8.68□□□□□ -1.02
CLIP3-202ENST00000585466 SPANXCQ9NY87 97 aa8.68□□□□□ -1.02
CLIP3-202ENST00000585466 ZNF73O43830 326 aaPredicted RBP8.67□□□□□ -1.02
CLIP3-202ENST00000585466 S100A12P80511 92 aa8.67□□□□□ -1.02
CLIP3-202ENST00000585466 GAGE2AQ6NT46 116 aa8.66□□□□□ -1.02
CLIP3-202ENST00000585466 Q8NBF4 154 aa8.66□□□□□ -1.02
CLIP3-202ENST00000585466 ATOH7Q8N100 152 aa8.65□□□□□ -1.02
CLIP3-202ENST00000585466 S100A6P06703 90 aa8.64□□□□□ -1.03
CLIP3-202ENST00000585466 SPAG11AQ6PDA7 123 aa8.64□□□□□ -1.03
CLIP3-202ENST00000585466 SPANXDQ9BXN6 97 aa8.64□□□□□ -1.03
CLIP3-202ENST00000585466 LOC105371267A0A1B0GV96 52 aa8.63□□□□□ -1.03
CLIP3-202ENST00000585466 C5orf52A6NGY3 159 aa8.63□□□□□ -1.03
CLIP3-202ENST00000585466 PCP2Q8IVA1 136 aa8.63□□□□□ -1.03
CLIP3-202ENST00000585466 HIST3H2BBQ8N257 126 aa8.63□□□□□ -1.03
CLIP3-202ENST00000585466 C20orf202A1L168 122 aa8.62□□□□□ -1.03
CLIP3-202ENST00000585466 SNRPEP62304 92 aaKnown RBP8.62□□□□□ -1.03
CLIP3-202ENST00000585466 TPRXLQ17RH7 258 aa8.62□□□□□ -1.03
CLIP3-202ENST00000585466 ST20-AS1Q8NBB2 130 aa8.62□□□□□ -1.03
CLIP3-202ENST00000585466 MOBPQ13875 183 aa8.61□□□□□ -1.03
CLIP3-202ENST00000585466 HIST1H2BLQ99880 126 aa8.61□□□□□ -1.03
CLIP3-202ENST00000585466 IGLV7-46A0A075B6I9 117 aa8.6□□□□□ -1.03
CLIP3-202ENST00000585466 JOSD1Q15040 202 aaPredicted RBP8.6□□□□□ -1.03
CLIP3-202ENST00000585466 IGLV9-49A0A0B4J1Y8 123 aa8.59□□□□□ -1.03
CLIP3-202ENST00000585466 SCGB1D4Q6XE38 83 aa8.58□□□□□ -1.04
CLIP3-202ENST00000585466 SSBP3-AS1Q7Z2R9 100 aa8.58□□□□□ -1.04
CLIP3-202ENST00000585466 OR13C6PQ8NH95 151 aa8.58□□□□□ -1.04
CLIP3-202ENST00000585466 SPINK1P00995 79 aa8.57□□□□□ -1.04
CLIP3-202ENST00000585466 SPRR1BP22528 89 aa8.57□□□□□ -1.04
CLIP3-202ENST00000585466 ELOF1P60002 83 aaKnown RBP8.57□□□□□ -1.04
CLIP3-202ENST00000585466 LINC00518Q8N0U6 118 aa8.57□□□□□ -1.04
CLIP3-202ENST00000585466 CBY1Q9Y3M2 126 aa8.57□□□□□ -1.04
CLIP3-202ENST00000585466 IFITM1P13164 125 aa8.56□□□□□ -1.04
CLIP3-202ENST00000585466 FP248Q71RG6 208 aaPredicted RBP8.56□□□□□ -1.04
CLIP3-202ENST00000585466 AKR1D1P51857 326 aa8.55□□□□□ -1.04
CLIP3-202ENST00000585466 RPS29P62273 56 aaKnown RBP8.55□□□□□ -1.04
CLIP3-202ENST00000585466 C6orf99Q4VX62 202 aa8.55□□□□□ -1.04
CLIP3-202ENST00000585466 C4orf48Q5BLP8 95 aa8.55□□□□□ -1.04
CLIP3-202ENST00000585466 Q6ZVH6 145 aa8.55□□□□□ -1.04
CLIP3-202ENST00000585466 MUSTN1Q8IVN3 82 aa8.55□□□□□ -1.04
CLIP3-202ENST00000585466 Q8N377 158 aa8.54□□□□□ -1.04
CLIP3-202ENST00000585466 DHRS4-AS1Q9P1J3 65 aa8.54□□□□□ -1.04
CLIP3-202ENST00000585466 COX7BP24311 80 aa8.53□□□□□ -1.04
CLIP3-202ENST00000585466 HINT1P49773 126 aaPredicted RBP8.53□□□□□ -1.04
CLIP3-202ENST00000585466 KRTAP13-3Q3SY46 172 aa8.53□□□□□ -1.04
CLIP3-202ENST00000585466 S100A2P29034 98 aa8.52□□□□□ -1.05
CLIP3-202ENST00000585466 TRBV7-6A0A0J9YX20 115 aa8.51□□□□□ -1.05
CLIP3-202ENST00000585466 CDIP1Q9H305 208 aa8.51□□□□□ -1.05
CLIP3-202ENST00000585466 C9orf153Q5TBE3 101 aa8.5□□□□□ -1.05
CLIP3-202ENST00000585466 COPS9Q8WXC6 57 aa8.5□□□□□ -1.05
CLIP3-202ENST00000585466 FAT4Q6V0I7 4981 aa8.5□□□□□ -1.05
CLIP3-202ENST00000585466 LINC01547P58512 204 aaPredicted RBP8.49□□□□□ -1.05
CLIP3-202ENST00000585466 A0A1B0GWB2 263 aa8.47□□□□□ -1.05
CLIP3-202ENST00000585466 SMIM29Q86T20 159 aa8.47□□□□□ -1.05
CLIP3-202ENST00000585466 A6NDN8 102 aa8.46□□□□□ -1.06
CLIP3-202ENST00000585466 SMIM11BQ8TCY0 68 aa8.46□□□□□ -1.06
CLIP3-202ENST00000585466 IGLV5-48A0A075B6I7 105 aa8.45□□□□□ -1.06
CLIP3-202ENST00000585466 SLC25A20O43772 301 aa8.45□□□□□ -1.06
CLIP3-202ENST00000585466 TRAV13-2A0A0B4J235 113 aa8.44□□□□□ -1.06
CLIP3-202ENST00000585466 SLC25A34Q6PIV7 304 aa8.43□□□□□ -1.06
CLIP3-202ENST00000585466 LAMTOR3Q9UHA4 124 aa8.43□□□□□ -1.06
CLIP3-202ENST00000585466 TEX49A0A1B0GTD5 131 aa8.42□□□□□ -1.06
CLIP3-202ENST00000585466 A4D1N5 150 aa8.42□□□□□ -1.06
CLIP3-202ENST00000585466 HSBP1L1C9JCN9 74 aa8.42□□□□□ -1.06
CLIP3-202ENST00000585466 Q1RN00 199 aa8.42□□□□□ -1.06
CLIP3-202ENST00000585466 DEFB105AQ8NG35 78 aa8.42□□□□□ -1.06
CLIP3-202ENST00000585466 TAL2Q16559 108 aa8.41□□□□□ -1.06
CLIP3-202ENST00000585466 PYY3Q5JQD4 70 aa8.4□□□□□ -1.06
CLIP3-202ENST00000585466 SCGB1D1O95968 90 aa8.39□□□□□ -1.07
CLIP3-202ENST00000585466 SMIM6P0DI80 62 aa8.39□□□□□ -1.07
CLIP3-202ENST00000585466 COX8AP10176 69 aa8.39□□□□□ -1.07
CLIP3-202ENST00000585466 ASB16-AS1Q495Z4 193 aa8.39□□□□□ -1.07
CLIP3-202ENST00000585466 LCE2AQ5TA79 106 aaPredicted RBP8.39□□□□□ -1.07
CLIP3-202ENST00000585466 HRCT1Q6UXD1 115 aa8.39□□□□□ -1.07
CLIP3-202ENST00000585466 KRTAP4-1Q9BYQ7 146 aa8.38□□□□□ -1.07
CLIP3-202ENST00000585466 A0A0G2JQZ4 141 aa8.37□□□□□ -1.07
CLIP3-202ENST00000585466 DLEU1O43261 78 aa8.37□□□□□ -1.07
CLIP3-202ENST00000585466 CD164Q04900 197 aa8.37□□□□□ -1.07
CLIP3-202ENST00000585466 XP32Q5T750 250 aa8.36□□□□□ -1.07
CLIP3-202ENST00000585466 LINC00575Q6W349 94 aa8.36□□□□□ -1.07
CLIP3-202ENST00000585466 A0A0U1RQV1 116 aa8.35□□□□□ -1.07
CLIP3-202ENST00000585466 C12orf57Q99622 126 aa8.35□□□□□ -1.07
CLIP3-202ENST00000585466 PRO1933Q9H354 126 aa8.35□□□□□ -1.07
CLIP3-202ENST00000585466 Q5XG85 94 aa8.34□□□□□ -1.07
CLIP3-202ENST00000585466 LIMD2Q9BT23 127 aa8.34□□□□□ -1.07
CLIP3-202ENST00000585466 NHP2Q9NX24 153 aaKnown RBP8.34□□□□□ -1.07
CLIP3-202ENST00000585466 C2orf91Q6ZV80 131 aa8.32□□□□□ -1.08
CLIP3-202ENST00000585466 HIST1H4GQ99525 98 aa8.32□□□□□ -1.08
CLIP3-202ENST00000585466 C14orf144Q96I85 54 aa8.31□□□□□ -1.08
CLIP3-202ENST00000585466 H7C2G1 150 aa8.3□□□□□ -1.08
CLIP3-202ENST00000585466 Q6ZQY7 126 aa8.3□□□□□ -1.08
CLIP3-202ENST00000585466 HIGD1BQ9P298 99 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms