RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 TRAV23DV6A0A075B6W5 121 aa11.07□□□□□ -0.64
CCDC40-213ENST00000574933 H0Y9J4 135 aa11.07□□□□□ -0.64
CCDC40-213ENST00000574933 HSD52Q0P140 79 aa11.07□□□□□ -0.64
CCDC40-213ENST00000574933 PKHD1L1Q86WI1 4243 aa11.07□□□□□ -0.64
CCDC40-213ENST00000574933 RPL28P46779 137 aaKnown RBP11.06□□□□□ -0.64
CCDC40-213ENST00000574933 ZNF73O43830 326 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-213ENST00000574933 FAM19A1Q7Z5A9 133 aa11.04□□□□□ -0.64
CCDC40-213ENST00000574933 A6NDN8 102 aa11.03□□□□□ -0.64
CCDC40-213ENST00000574933 UBE2AP49459 152 aa11.03□□□□□ -0.64
CCDC40-213ENST00000574933 DIRC1Q969H9 104 aa11.03□□□□□ -0.64
CCDC40-213ENST00000574933 A0A0B4J2C4 111 aa11.02□□□□□ -0.65
CCDC40-213ENST00000574933 TMEM238LA0A1B0GVL6 79 aa11.02□□□□□ -0.65
CCDC40-213ENST00000574933 ETDCA0A1B0GVM5 59 aa11.02□□□□□ -0.65
CCDC40-213ENST00000574933 A6NJY4 79 aa11.02□□□□□ -0.65
CCDC40-213ENST00000574933 CFC1BP0CG36 223 aa11.02□□□□□ -0.65
CCDC40-213ENST00000574933 CFC1P0CG37 223 aa11.02□□□□□ -0.65
CCDC40-213ENST00000574933 FXYD2P54710 66 aa11.02□□□□□ -0.65
CCDC40-213ENST00000574933 B5MCH6 92 aa11.01□□□□□ -0.65
CCDC40-213ENST00000574933 TSTD3H0UI37 97 aa11.01□□□□□ -0.65
CCDC40-213ENST00000574933 PRLHP81277 87 aa11.01□□□□□ -0.65
CCDC40-213ENST00000574933 TRBV7-6A0A0J9YX20 115 aa10.99□□□□□ -0.65
CCDC40-213ENST00000574933 Q6ZRX8 168 aa10.99□□□□□ -0.65
CCDC40-213ENST00000574933 ABCA13Q86UQ4 5058 aa10.98□□□□□ -0.65
CCDC40-213ENST00000574933 RPL13AP40429 203 aaKnown RBP10.97□□□□□ -0.65
CCDC40-213ENST00000574933 HINT1P49773 126 aaPredicted RBP10.97□□□□□ -0.65
CCDC40-213ENST00000574933 C6orf99Q4VX62 202 aa10.97□□□□□ -0.65
CCDC40-213ENST00000574933 SMIM11BQ8TCY0 68 aa10.97□□□□□ -0.65
CCDC40-213ENST00000574933 A0A1B0GWB2 263 aa10.96□□□□□ -0.65
CCDC40-213ENST00000574933 RAB37Q96AX2 223 aa10.96□□□□□ -0.65
CCDC40-213ENST00000574933 ELOF1P60002 83 aaKnown RBP10.95□□□□□ -0.66
CCDC40-213ENST00000574933 BVES-AS1Q5T3Y7 98 aa10.95□□□□□ -0.66
CCDC40-213ENST00000574933 SMCR5Q8TEV8 140 aa10.95□□□□□ -0.66
CCDC40-213ENST00000574933 CTAG1AP78358 180 aa10.94□□□□□ -0.66
CCDC40-213ENST00000574933 Q9BRP9 147 aa10.94□□□□□ -0.66
CCDC40-213ENST00000574933 OXTP01178 125 aa10.93□□□□□ -0.66
CCDC40-213ENST00000574933 HIGD2AQ9BW72 106 aa10.93□□□□□ -0.66
CCDC40-213ENST00000574933 PRO1854Q9UHT4 67 aa10.93□□□□□ -0.66
CCDC40-213ENST00000574933 KRTAP1-4P0C5Y4 121 aa10.92□□□□□ -0.66
CCDC40-213ENST00000574933 COX7BP24311 80 aa10.92□□□□□ -0.66
CCDC40-213ENST00000574933 NHP2Q9NX24 153 aaKnown RBP10.92□□□□□ -0.66
CCDC40-213ENST00000574933 KRTAP29-1A8MX34 341 aaPredicted RBP10.91□□□□□ -0.66
CCDC40-213ENST00000574933 M0R143 59 aa10.91□□□□□ -0.66
CCDC40-213ENST00000574933 LINC01600Q96MT4 127 aa10.9□□□□□ -0.66
CCDC40-213ENST00000574933 DHRS4-AS1Q9P1J3 65 aa10.9□□□□□ -0.66
CCDC40-213ENST00000574933 MYCBP2O75592 4640 aa10.89□□□□□ -0.67
CCDC40-213ENST00000574933 ERC2-IT1O76042 136 aa10.88□□□□□ -0.67
CCDC40-213ENST00000574933 LRP1Q07954 4544 aaKnown RBP10.87□□□□□ -0.67
CCDC40-213ENST00000574933 VAMP3Q15836 100 aa10.87□□□□□ -0.67
CCDC40-213ENST00000574933 H7C2G1 150 aa10.86□□□□□ -0.67
CCDC40-213ENST00000574933 SPRR4Q96PI1 79 aa10.86□□□□□ -0.67
CCDC40-213ENST00000574933 ZNF706Q9Y5V0 76 aaPredicted RBP10.86□□□□□ -0.67
CCDC40-213ENST00000574933 K7ERJ3 54 aa10.85□□□□□ -0.67
CCDC40-213ENST00000574933 FAT3Q8TDW7 4589 aa10.85□□□□□ -0.67
CCDC40-213ENST00000574933 DMBT1Q9UGM3 2413 aaPredicted RBP10.84□□□□□ -0.67
CCDC40-213ENST00000574933 FAM229BQ4G0N7 80 aa10.84□□□□□ -0.67
CCDC40-213ENST00000574933 PCLOQ9Y6V0 5065 aa10.82□□□□□ -0.68
CCDC40-213ENST00000574933 MT1HL1P0DM35 61 aa10.82□□□□□ -0.68
CCDC40-213ENST00000574933 Q1RN00 199 aa10.82□□□□□ -0.68
CCDC40-213ENST00000574933 LINC00483Q53H64 154 aa10.82□□□□□ -0.68
CCDC40-213ENST00000574933 LINC00575Q6W349 94 aa10.82□□□□□ -0.68
CCDC40-213ENST00000574933 H0YGX0 51 aa10.81□□□□□ -0.68
CCDC40-213ENST00000574933 KRTAP10-8P60410 259 aa10.81□□□□□ -0.68
CCDC40-213ENST00000574933 TSPAN13O95857 204 aa10.8□□□□□ -0.68
CCDC40-213ENST00000574933 TRIAP1O43715 76 aa10.78□□□□□ -0.68
CCDC40-213ENST00000574933 SLC25A20O43772 301 aa10.78□□□□□ -0.68
CCDC40-213ENST00000574933 CRYGAP11844 174 aa10.78□□□□□ -0.68
CCDC40-213ENST00000574933 SPRR1BP22528 89 aa10.78□□□□□ -0.68
CCDC40-213ENST00000574933 PRR26Q8N8Z3 221 aa10.78□□□□□ -0.68
CCDC40-213ENST00000574933 ANAPC11Q9NYG5 84 aa10.78□□□□□ -0.68
CCDC40-213ENST00000574933 A0A087X002 238 aa10.77□□□□□ -0.69
CCDC40-213ENST00000574933 ST20-AS1Q8NBB2 130 aa10.77□□□□□ -0.69
CCDC40-213ENST00000574933 hADV29S1A0JD25 119 aa10.76□□□□□ -0.69
CCDC40-213ENST00000574933 GAGE2AQ6NT46 116 aa10.76□□□□□ -0.69
CCDC40-213ENST00000574933 IGLV5-48A0A075B6I7 105 aa10.75□□□□□ -0.69
CCDC40-213ENST00000574933 A0A1B0GX51 115 aa10.74□□□□□ -0.69
CCDC40-213ENST00000574933 LINC01547P58512 204 aaPredicted RBP10.74□□□□□ -0.69
CCDC40-213ENST00000574933 KRTAP13-2Q52LG2 175 aa10.74□□□□□ -0.69
CCDC40-213ENST00000574933 J3QL48 77 aa10.73□□□□□ -0.69
CCDC40-213ENST00000574933 COX6CP09669 75 aa10.73□□□□□ -0.69
CCDC40-213ENST00000574933 FAM218AQ96MZ4 157 aa10.73□□□□□ -0.69
CCDC40-213ENST00000574933 PSMB2P49721 201 aa10.72□□□□□ -0.69
CCDC40-213ENST00000574933 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.72□□□□□ -0.69
CCDC40-213ENST00000574933 TNXBP22105 4242 aa10.72□□□□□ -0.69
CCDC40-213ENST00000574933 TEX49A0A1B0GTD5 131 aa10.71□□□□□ -0.69
CCDC40-213ENST00000574933 BATFQ16520 125 aa10.71□□□□□ -0.69
CCDC40-213ENST00000574933 SNCGO76070 127 aa10.7□□□□□ -0.7
CCDC40-213ENST00000574933 Q6ZQY7 126 aa10.7□□□□□ -0.7
CCDC40-213ENST00000574933 SNHG12Q9BXW3 62 aa10.69□□□□□ -0.7
CCDC40-213ENST00000574933 C3orf22Q8N5N4 141 aa10.68□□□□□ -0.7
CCDC40-213ENST00000574933 TYMSOSQ8TAI1 123 aa10.68□□□□□ -0.7
CCDC40-213ENST00000574933 Q8N377 158 aa10.67□□□□□ -0.7
CCDC40-213ENST00000574933 CLEC2BQ92478 149 aa10.67□□□□□ -0.7
CCDC40-213ENST00000574933 OCIAD2Q56VL3 154 aa10.66□□□□□ -0.7
CCDC40-213ENST00000574933 SMIM29Q86T20 159 aa10.66□□□□□ -0.7
CCDC40-213ENST00000574933 DEFB105AQ8NG35 78 aa10.66□□□□□ -0.7
CCDC40-213ENST00000574933 PPDPFLQ8WWR9 84 aa10.66□□□□□ -0.7
CCDC40-213ENST00000574933 LAMTOR3Q9UHA4 124 aa10.65□□□□□ -0.7
CCDC40-213ENST00000574933 TAX1BP3O14907 124 aa10.64□□□□□ -0.71
CCDC40-213ENST00000574933 SCGB1C2P0DMR2 95 aa10.64□□□□□ -0.71
CCDC40-213ENST00000574933 SSBP3-AS1Q7Z2R9 100 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms