RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 COA6Q5JTJ3 125 aaKnown RBP5.41□□□□□ -1.54
CIITA-208ENST00000572665 LINC00304Q8N9R0 145 aa5.41□□□□□ -1.54
CIITA-208ENST00000572665 IGKV2-28A0A075B6P5 120 aa5.4□□□□□ -1.54
CIITA-208ENST00000572665 IGKV2D-28P01615 120 aa5.4□□□□□ -1.54
CIITA-208ENST00000572665 IGLC3P0DOY3 106 aa5.4□□□□□ -1.54
CIITA-208ENST00000572665 FAM19A1Q7Z5A9 133 aa5.4□□□□□ -1.54
CIITA-208ENST00000572665 IFI27L1Q96BM0 104 aa5.4□□□□□ -1.54
CIITA-208ENST00000572665 ERG28Q9UKR5 140 aa5.4□□□□□ -1.54
CIITA-208ENST00000572665 TRAV12-1A0A0B4J245 112 aa5.39□□□□□ -1.55
CIITA-208ENST00000572665 LEPROTL1O95214 131 aa5.39□□□□□ -1.55
CIITA-208ENST00000572665 LCE1FQ5T754 118 aa5.39□□□□□ -1.55
CIITA-208ENST00000572665 KRTAP13-1Q8IUC0 172 aa5.39□□□□□ -1.55
CIITA-208ENST00000572665 LPAP08519 4548 aa5.38□□□□□ -1.55
CIITA-208ENST00000572665 SPAG11AQ6PDA7 123 aa5.38□□□□□ -1.55
CIITA-208ENST00000572665 TMEM126AQ9H061 195 aa5.38□□□□□ -1.55
CIITA-208ENST00000572665 SND1-IT1Q9HBX3 110 aa5.38□□□□□ -1.55
CIITA-208ENST00000572665 PRLHP81277 87 aa5.37□□□□□ -1.55
CIITA-208ENST00000572665 TMEM170BQ5T4T1 132 aa5.37□□□□□ -1.55
CIITA-208ENST00000572665 HSPB8Q9UJY1 196 aa5.37□□□□□ -1.55
CIITA-208ENST00000572665 ZNF706Q9Y5V0 76 aaPredicted RBP5.37□□□□□ -1.55
CIITA-208ENST00000572665 C11orf86A6NJI1 115 aa5.36□□□□□ -1.55
CIITA-208ENST00000572665 ZNF22P17026 224 aaPredicted RBP5.36□□□□□ -1.55
CIITA-208ENST00000572665 S100A12P80511 92 aa5.36□□□□□ -1.55
CIITA-208ENST00000572665 TPRXLQ17RH7 258 aa5.36□□□□□ -1.55
CIITA-208ENST00000572665 KRTAP13-2Q52LG2 175 aa5.36□□□□□ -1.55
CIITA-208ENST00000572665 ANAPC11Q9NYG5 84 aa5.36□□□□□ -1.55
CIITA-208ENST00000572665 CHTOPQ9Y3Y2 248 aaKnown RBP5.36□□□□□ -1.55
CIITA-208ENST00000572665 LINC00587B1AMM8 73 aa5.35□□□□□ -1.55
CIITA-208ENST00000572665 FABP4P15090 132 aa5.35□□□□□ -1.55
CIITA-208ENST00000572665 LINC00158P58513 81 aa5.35□□□□□ -1.55
CIITA-208ENST00000572665 TMEM238C9JI98 176 aa5.34□□□□□ -1.55
CIITA-208ENST00000572665 M0R378 163 aa5.34□□□□□ -1.55
CIITA-208ENST00000572665 PLEKHB2Q96CS7 222 aa5.34□□□□□ -1.55
CIITA-208ENST00000572665 ZNF625Q96I27 306 aaPredicted RBP5.34□□□□□ -1.55
CIITA-208ENST00000572665 HIGD2AQ9BW72 106 aa5.34□□□□□ -1.55
CIITA-208ENST00000572665 MAP1LC3CQ9BXW4 147 aa5.34□□□□□ -1.55
CIITA-208ENST00000572665 TMEM223A0PJW6 202 aa5.33□□□□□ -1.56
CIITA-208ENST00000572665 SYS1-DBNDD2H3BUS1 97 aa5.33□□□□□ -1.56
CIITA-208ENST00000572665 PLNP26678 52 aa5.33□□□□□ -1.56
CIITA-208ENST00000572665 RETNLBQ9BQ08 111 aa5.33□□□□□ -1.56
CIITA-208ENST00000572665 H0Y8G0 127 aa5.32□□□□□ -1.56
CIITA-208ENST00000572665 FP248Q71RG6 208 aaPredicted RBP5.32□□□□□ -1.56
CIITA-208ENST00000572665 DPM2O94777 84 aa5.31□□□□□ -1.56
CIITA-208ENST00000572665 MEIG1Q5JSS6 88 aa5.31□□□□□ -1.56
CIITA-208ENST00000572665 LINC01545Q5VT33 79 aa5.31□□□□□ -1.56
CIITA-208ENST00000572665 HIST3H2BBQ8N257 126 aa5.31□□□□□ -1.56
CIITA-208ENST00000572665 LINC00337Q8N6G1 96 aa5.31□□□□□ -1.56
CIITA-208ENST00000572665 SPRR4Q96PI1 79 aa5.31□□□□□ -1.56
CIITA-208ENST00000572665 PPDPFQ9H3Y8 114 aa5.31□□□□□ -1.56
CIITA-208ENST00000572665 IGKCP01834 107 aa5.3□□□□□ -1.56
CIITA-208ENST00000572665 C3orf79P0CE67 100 aa5.3□□□□□ -1.56
CIITA-208ENST00000572665 HIST1H2BLQ99880 126 aa5.3□□□□□ -1.56
CIITA-208ENST00000572665 PMCHL2Q9BQD1 86 aa5.3□□□□□ -1.56
CIITA-208ENST00000572665 NDUFA12Q9UI09 145 aa5.3□□□□□ -1.56
CIITA-208ENST00000572665 ETDCA0A1B0GVM5 59 aa5.29□□□□□ -1.56
CIITA-208ENST00000572665 SPINK1P00995 79 aa5.29□□□□□ -1.56
CIITA-208ENST00000572665 BOD1L2Q8IYS8 172 aa5.29□□□□□ -1.56
CIITA-208ENST00000572665 C3orf22Q8N5N4 141 aa5.29□□□□□ -1.56
CIITA-208ENST00000572665 MYMXA0A1B0GTQ4 84 aa5.28□□□□□ -1.56
CIITA-208ENST00000572665 S100A6P06703 90 aa5.28□□□□□ -1.56
CIITA-208ENST00000572665 KRTAP10-6P60371 365 aaPredicted RBP5.28□□□□□ -1.56
CIITA-208ENST00000572665 KRTDAPP60985 99 aa5.28□□□□□ -1.56
CIITA-208ENST00000572665 KCNQ1DNQ9H478 68 aa5.28□□□□□ -1.56
CIITA-208ENST00000572665 DHRS4-AS1Q9P1J3 65 aa5.28□□□□□ -1.56
CIITA-208ENST00000572665 SMIM13P0DJ93 91 aa5.27□□□□□ -1.57
CIITA-208ENST00000572665 DSCR10P59022 87 aa5.27□□□□□ -1.57
CIITA-208ENST00000572665 E9PLD3 99 aa5.26□□□□□ -1.57
CIITA-208ENST00000572665 NCR3O14931 201 aa5.26□□□□□ -1.57
CIITA-208ENST00000572665 LEPROTO15243 131 aa5.26□□□□□ -1.57
CIITA-208ENST00000572665 S100A2P29034 98 aa5.26□□□□□ -1.57
CIITA-208ENST00000572665 SPRR1AP35321 89 aa5.26□□□□□ -1.57
CIITA-208ENST00000572665 TSPEAR-AS2P59090 65 aa5.26□□□□□ -1.57
CIITA-208ENST00000572665 MIR7-3HGQ8N6C7 128 aa5.26□□□□□ -1.57
CIITA-208ENST00000572665 Q8NDZ9 215 aa5.26□□□□□ -1.57
CIITA-208ENST00000572665 SMCR5Q8TEV8 140 aa5.26□□□□□ -1.57
CIITA-208ENST00000572665 MIEN1Q9BRT3 115 aa5.26□□□□□ -1.57
CIITA-208ENST00000572665 C20orf202A1L168 122 aa5.25□□□□□ -1.57
CIITA-208ENST00000572665 J3QQQ9 107 aa5.25□□□□□ -1.57
CIITA-208ENST00000572665 AKR1D1P51857 326 aa5.25□□□□□ -1.57
CIITA-208ENST00000572665 HERVK_113P61574 105 aa5.25□□□□□ -1.57
CIITA-208ENST00000572665 RPS29P62273 56 aaKnown RBP5.25□□□□□ -1.57
CIITA-208ENST00000572665 SSBP3-AS1Q7Z2R9 100 aa5.25□□□□□ -1.57
CIITA-208ENST00000572665 CBY1Q9Y3M2 126 aa5.25□□□□□ -1.57
CIITA-208ENST00000572665 MUC2Q02817 5179 aa5.25□□□□□ -1.57
CIITA-208ENST00000572665 TRBV10-2A0A0K0K1G8 114 aa5.24□□□□□ -1.57
CIITA-208ENST00000572665 NMUP48645 174 aa5.24□□□□□ -1.57
CIITA-208ENST00000572665 JOSD1Q15040 202 aaPredicted RBP5.24□□□□□ -1.57
CIITA-208ENST00000572665 TRBV10-3A0A0K0K1G6 114 aa5.23□□□□□ -1.57
CIITA-208ENST00000572665 LINC00483Q53H64 154 aa5.23□□□□□ -1.57
CIITA-208ENST00000572665 S100A7L2Q5SY68 101 aa5.23□□□□□ -1.57
CIITA-208ENST00000572665 DAND5Q8N907 189 aa5.23□□□□□ -1.57
CIITA-208ENST00000572665 KRTAP4-16G5E9R7 235 aaPredicted RBP5.22□□□□□ -1.57
CIITA-208ENST00000572665 SLC25A20O43772 301 aa5.22□□□□□ -1.57
CIITA-208ENST00000572665 LGALS3P17931 250 aaKnown RBP5.22□□□□□ -1.57
CIITA-208ENST00000572665 DDTP30046 118 aa5.22□□□□□ -1.57
CIITA-208ENST00000572665 SPANXB1Q9NS25 103 aaPredicted RBP5.22□□□□□ -1.57
CIITA-208ENST00000572665 LOC107984156A0A0G2JMH3 177 aa5.21□□□□□ -1.58
CIITA-208ENST00000572665 HINT1P49773 126 aaPredicted RBP5.21□□□□□ -1.58
CIITA-208ENST00000572665 MOBPQ13875 183 aa5.21□□□□□ -1.58
CIITA-208ENST00000572665 KRTAP13-3Q3SY46 172 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms