RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ETDCA0A1B0GVM5 59 aa4.81□□□□□ -1.64
VPS53-214ENST00000572607 C20orf202A1L168 122 aa4.81□□□□□ -1.64
VPS53-214ENST00000572607 FAM229BQ4G0N7 80 aa4.81□□□□□ -1.64
VPS53-214ENST00000572607 DAND5Q8N907 189 aa4.81□□□□□ -1.64
VPS53-214ENST00000572607 HIGD2AQ9BW72 106 aa4.81□□□□□ -1.64
VPS53-214ENST00000572607 ZNF706Q9Y5V0 76 aaPredicted RBP4.81□□□□□ -1.64
VPS53-214ENST00000572607 A0A087X002 238 aa4.8□□□□□ -1.64
VPS53-214ENST00000572607 TRBV10-2A0A0K0K1G8 114 aa4.8□□□□□ -1.64
VPS53-214ENST00000572607 KRTDAPP60985 99 aa4.8□□□□□ -1.64
VPS53-214ENST00000572607 S100A7L2Q5SY68 101 aa4.8□□□□□ -1.64
VPS53-214ENST00000572607 LINC01545Q5VT33 79 aa4.8□□□□□ -1.64
VPS53-214ENST00000572607 SPANXB1Q9NS25 103 aaPredicted RBP4.8□□□□□ -1.64
VPS53-214ENST00000572607 LOC107984156A0A0G2JMH3 177 aa4.79□□□□□ -1.64
VPS53-214ENST00000572607 A0A0J9YXY3 114 aa4.79□□□□□ -1.64
VPS53-214ENST00000572607 TRBV10-3A0A0K0K1G6 114 aa4.79□□□□□ -1.64
VPS53-214ENST00000572607 DDTP30046 118 aa4.79□□□□□ -1.64
VPS53-214ENST00000572607 AKR1D1P51857 326 aa4.79□□□□□ -1.64
VPS53-214ENST00000572607 ARL17AQ8IVW1 177 aa4.79□□□□□ -1.64
VPS53-214ENST00000572607 LINC00337Q8N6G1 96 aa4.79□□□□□ -1.64
VPS53-214ENST00000572607 KCNQ1DNQ9H478 68 aa4.79□□□□□ -1.64
VPS53-214ENST00000572607 ANAPC11Q9NYG5 84 aa4.79□□□□□ -1.64
VPS53-214ENST00000572607 NDUFC2O95298 119 aa4.78□□□□□ -1.64
VPS53-214ENST00000572607 TSPAN13O95857 204 aa4.78□□□□□ -1.64
VPS53-214ENST00000572607 C3orf79P0CE67 100 aa4.78□□□□□ -1.64
VPS53-214ENST00000572607 NPC2P61916 151 aa4.78□□□□□ -1.64
VPS53-214ENST00000572607 COA6Q5JTJ3 125 aaKnown RBP4.78□□□□□ -1.64
VPS53-214ENST00000572607 CBY1Q9Y3M2 126 aa4.78□□□□□ -1.64
VPS53-214ENST00000572607 FAT4Q6V0I7 4981 aa4.77□□□□□ -1.65
VPS53-214ENST00000572607 KRTAP23-1A1A580 65 aa4.77□□□□□ -1.65
VPS53-214ENST00000572607 ZNF815PA8K554 130 aa4.77□□□□□ -1.65
VPS53-214ENST00000572607 S100A1P23297 94 aa4.77□□□□□ -1.65
VPS53-214ENST00000572607 SPRR1AP35321 89 aa4.77□□□□□ -1.65
VPS53-214ENST00000572607 PRR4Q16378 134 aa4.77□□□□□ -1.65
VPS53-214ENST00000572607 LINC00304Q8N9R0 145 aa4.77□□□□□ -1.65
VPS53-214ENST00000572607 SPRR4Q96PI1 79 aa4.77□□□□□ -1.65
VPS53-214ENST00000572607 MUC2Q02817 5179 aa4.77□□□□□ -1.65
VPS53-214ENST00000572607 TRAV23DV6A0A075B6W5 121 aa4.76□□□□□ -1.65
VPS53-214ENST00000572607 TIMM17BO60830 172 aa4.76□□□□□ -1.65
VPS53-214ENST00000572607 S100A2P29034 98 aa4.75□□□□□ -1.65
VPS53-214ENST00000572607 HINT1P49773 126 aaPredicted RBP4.75□□□□□ -1.65
VPS53-214ENST00000572607 JOSD1Q15040 202 aaPredicted RBP4.75□□□□□ -1.65
VPS53-214ENST00000572607 KRTAP13-2Q52LG2 175 aa4.75□□□□□ -1.65
VPS53-214ENST00000572607 ADAMTSL4-AS1Q5T5F5 129 aa4.75□□□□□ -1.65
VPS53-214ENST00000572607 SCGB1D4Q6XE38 83 aa4.75□□□□□ -1.65
VPS53-214ENST00000572607 SMCR5Q8TEV8 140 aa4.75□□□□□ -1.65
VPS53-214ENST00000572607 COPS9Q8WXC6 57 aa4.75□□□□□ -1.65
VPS53-214ENST00000572607 SPANXCQ9NY87 97 aa4.75□□□□□ -1.65
VPS53-214ENST00000572607 B5MCH6 92 aa4.74□□□□□ -1.65
VPS53-214ENST00000572607 KRTAP4-16G5E9R7 235 aaPredicted RBP4.74□□□□□ -1.65
VPS53-214ENST00000572607 IGLV6-57P01721 117 aa4.74□□□□□ -1.65
VPS53-214ENST00000572607 S100A6P06703 90 aa4.74□□□□□ -1.65
VPS53-214ENST00000572607 SOSTDC1Q6X4U4 206 aa4.74□□□□□ -1.65
VPS53-214ENST00000572607 OR13C6PQ8NH95 151 aa4.74□□□□□ -1.65
VPS53-214ENST00000572607 LINC00308Q8TCZ7 52 aa4.74□□□□□ -1.65
VPS53-214ENST00000572607 ZNF73O43830 326 aaPredicted RBP4.73□□□□□ -1.65
VPS53-214ENST00000572607 CTAG1AP78358 180 aa4.73□□□□□ -1.65
VPS53-214ENST00000572607 GAGE2AQ6NT46 116 aa4.73□□□□□ -1.65
VPS53-214ENST00000572607 LINC00518Q8N0U6 118 aa4.73□□□□□ -1.65
VPS53-214ENST00000572607 PPDPFQ9H3Y8 114 aa4.73□□□□□ -1.65
VPS53-214ENST00000572607 SNRPEP62304 92 aaKnown RBP4.72□□□□□ -1.65
VPS53-214ENST00000572607 SPAG11AQ6PDA7 123 aa4.72□□□□□ -1.65
VPS53-214ENST00000572607 Q6ZRX8 168 aa4.72□□□□□ -1.65
VPS53-214ENST00000572607 ATOH7Q8N100 152 aa4.72□□□□□ -1.65
VPS53-214ENST00000572607 C3orf22Q8N5N4 141 aa4.72□□□□□ -1.65
VPS53-214ENST00000572607 LITAFQ99732 161 aa4.72□□□□□ -1.65
VPS53-214ENST00000572607 SPANXDQ9BXN6 97 aa4.72□□□□□ -1.65
VPS53-214ENST00000572607 TTTY13Q9BZ97 58 aa4.72□□□□□ -1.65
VPS53-214ENST00000572607 HSBP1L1C9JCN9 74 aa4.71□□□□□ -1.66
VPS53-214ENST00000572607 IFITM1P13164 125 aa4.7□□□□□ -1.66
VPS53-214ENST00000572607 LINC00483Q53H64 154 aa4.7□□□□□ -1.66
VPS53-214ENST00000572607 Q6ZVH6 145 aa4.7□□□□□ -1.66
VPS53-214ENST00000572607 HIST3H2BBQ8N257 126 aa4.7□□□□□ -1.66
VPS53-214ENST00000572607 IGLV9-49A0A0B4J1Y8 123 aa4.69□□□□□ -1.66
VPS53-214ENST00000572607 Q8NBF4 154 aa4.69□□□□□ -1.66
VPS53-214ENST00000572607 HIST1H2BLQ99880 126 aa4.69□□□□□ -1.66
VPS53-214ENST00000572607 Q9BRP9 147 aa4.69□□□□□ -1.66
VPS53-214ENST00000572607 DHRS4-AS1Q9P1J3 65 aa4.69□□□□□ -1.66
VPS53-214ENST00000572607 C5orf52A6NGY3 159 aa4.68□□□□□ -1.66
VPS53-214ENST00000572607 ERC2-IT1O76042 136 aa4.68□□□□□ -1.66
VPS53-214ENST00000572607 COX7BP24311 80 aa4.68□□□□□ -1.66
VPS53-214ENST00000572607 MOBPQ13875 183 aa4.68□□□□□ -1.66
VPS53-214ENST00000572607 C9orf153Q5TBE3 101 aa4.68□□□□□ -1.66
VPS53-214ENST00000572607 PCP2Q8IVA1 136 aa4.68□□□□□ -1.66
VPS53-214ENST00000572607 RETNLBQ9BQ08 111 aa4.68□□□□□ -1.66
VPS53-214ENST00000572607 A6NDN8 102 aa4.67□□□□□ -1.66
VPS53-214ENST00000572607 SPINK1P00995 79 aa4.67□□□□□ -1.66
VPS53-214ENST00000572607 SLC25A34Q6PIV7 304 aa4.67□□□□□ -1.66
VPS53-214ENST00000572607 SSBP3-AS1Q7Z2R9 100 aa4.67□□□□□ -1.66
VPS53-214ENST00000572607 IGLV7-46A0A075B6I9 117 aa4.66□□□□□ -1.66
VPS53-214ENST00000572607 C6orf99Q4VX62 202 aa4.66□□□□□ -1.66
VPS53-214ENST00000572607 MUSTN1Q8IVN3 82 aa4.66□□□□□ -1.66
VPS53-214ENST00000572607 TRAV13-2A0A0B4J235 113 aa4.65□□□□□ -1.67
VPS53-214ENST00000572607 SCGB1D1O95968 90 aa4.65□□□□□ -1.67
VPS53-214ENST00000572607 ELOF1P60002 83 aaKnown RBP4.65□□□□□ -1.67
VPS53-214ENST00000572607 ST20-AS1Q8NBB2 130 aa4.65□□□□□ -1.67
VPS53-214ENST00000572607 TRBV7-6A0A0J9YX20 115 aa4.64□□□□□ -1.67
VPS53-214ENST00000572607 A0A1B0GWB2 263 aa4.64□□□□□ -1.67
VPS53-214ENST00000572607 FP248Q71RG6 208 aaPredicted RBP4.64□□□□□ -1.67
VPS53-214ENST00000572607 LAMTOR3Q9UHA4 124 aa4.64□□□□□ -1.67
VPS53-214ENST00000572607 A4D1N5 150 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms