RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 C1orf137Q5JT78 98 aa5.64□□□□□ -1.51
VPS35-211ENST00000569950 LINC00518Q8N0U6 118 aa5.64□□□□□ -1.51
VPS35-211ENST00000569950 MIEN1Q9BRT3 115 aa5.64□□□□□ -1.51
VPS35-211ENST00000569950 BCE1O60756 84 aa5.63□□□□□ -1.51
VPS35-211ENST00000569950 DDTP30046 118 aa5.63□□□□□ -1.51
VPS35-211ENST00000569950 C12orf57Q99622 126 aa5.63□□□□□ -1.51
VPS35-211ENST00000569950 UQCR10Q9UDW1 63 aa5.63□□□□□ -1.51
VPS35-211ENST00000569950 PRYO14603 147 aa5.62□□□□□ -1.51
VPS35-211ENST00000569950 FXYD2P54710 66 aa5.62□□□□□ -1.51
VPS35-211ENST00000569950 S100A12P80511 92 aa5.62□□□□□ -1.51
VPS35-211ENST00000569950 XP32Q5T750 250 aa5.62□□□□□ -1.51
VPS35-211ENST00000569950 REG3GQ6UW15 175 aa5.62□□□□□ -1.51
VPS35-211ENST00000569950 HIST1H4GQ99525 98 aa5.62□□□□□ -1.51
VPS35-211ENST00000569950 TAL2Q16559 108 aa5.61□□□□□ -1.51
VPS35-211ENST00000569950 DMBT1Q9UGM3 2413 aaPredicted RBP5.6□□□□□ -1.51
VPS35-211ENST00000569950 ZNF861PO60384 105 aa5.6□□□□□ -1.51
VPS35-211ENST00000569950 KRTAP1-4P0C5Y4 121 aa5.6□□□□□ -1.51
VPS35-211ENST00000569950 CFC1BP0CG36 223 aa5.6□□□□□ -1.51
VPS35-211ENST00000569950 CFC1P0CG37 223 aa5.6□□□□□ -1.51
VPS35-211ENST00000569950 INAFM2P0DMQ5 153 aa5.6□□□□□ -1.51
VPS35-211ENST00000569950 PRLHP81277 87 aa5.6□□□□□ -1.51
VPS35-211ENST00000569950 CEND1Q8N111 149 aa5.6□□□□□ -1.51
VPS35-211ENST00000569950 TRAV23DV6A0A075B6W5 121 aa5.59□□□□□ -1.51
VPS35-211ENST00000569950 B5MCH6 92 aa5.59□□□□□ -1.51
VPS35-211ENST00000569950 H0Y9J4 135 aa5.59□□□□□ -1.51
VPS35-211ENST00000569950 HSD52Q0P140 79 aa5.59□□□□□ -1.51
VPS35-211ENST00000569950 SPINK6Q6UWN8 80 aa5.59□□□□□ -1.51
VPS35-211ENST00000569950 Q9BRP9 147 aa5.59□□□□□ -1.51
VPS35-211ENST00000569950 TMEM238LA0A1B0GVL6 79 aa5.58□□□□□ -1.52
VPS35-211ENST00000569950 A0A1B0GWB2 263 aa5.58□□□□□ -1.52
VPS35-211ENST00000569950 ZNF73O43830 326 aaPredicted RBP5.58□□□□□ -1.52
VPS35-211ENST00000569950 SMCR5Q8TEV8 140 aa5.58□□□□□ -1.52
VPS35-211ENST00000569950 COPS9Q8WXC6 57 aa5.58□□□□□ -1.52
VPS35-211ENST00000569950 A0A0B4J2C4 111 aa5.57□□□□□ -1.52
VPS35-211ENST00000569950 ERC2-IT1O76042 136 aa5.57□□□□□ -1.52
VPS35-211ENST00000569950 MT1HL1P0DM35 61 aa5.57□□□□□ -1.52
VPS35-211ENST00000569950 S100A7L2Q5SY68 101 aa5.57□□□□□ -1.52
VPS35-211ENST00000569950 FAM19A1Q7Z5A9 133 aa5.57□□□□□ -1.52
VPS35-211ENST00000569950 SMIM11BQ8TCY0 68 aa5.57□□□□□ -1.52
VPS35-211ENST00000569950 BVES-AS1Q5T3Y7 98 aa5.56□□□□□ -1.52
VPS35-211ENST00000569950 Q6ZRX8 168 aa5.56□□□□□ -1.52
VPS35-211ENST00000569950 OR13C6PQ8NH95 151 aa5.56□□□□□ -1.52
VPS35-211ENST00000569950 HERC1Q15751 4861 aa5.56□□□□□ -1.52
VPS35-211ENST00000569950 TRAV13-2A0A0B4J235 113 aa5.55□□□□□ -1.52
VPS35-211ENST00000569950 A6NDN8 102 aa5.55□□□□□ -1.52
VPS35-211ENST00000569950 K7ERJ3 54 aa5.55□□□□□ -1.52
VPS35-211ENST00000569950 RPL13AP40429 203 aaKnown RBP5.55□□□□□ -1.52
VPS35-211ENST00000569950 RPL28P46779 137 aaKnown RBP5.55□□□□□ -1.52
VPS35-211ENST00000569950 ELOF1P60002 83 aaKnown RBP5.55□□□□□ -1.52
VPS35-211ENST00000569950 CTAG1AP78358 180 aa5.55□□□□□ -1.52
VPS35-211ENST00000569950 C6orf99Q4VX62 202 aa5.55□□□□□ -1.52
VPS35-211ENST00000569950 UBE2AP49459 152 aa5.54□□□□□ -1.52
VPS35-211ENST00000569950 DIRC1Q969H9 104 aa5.54□□□□□ -1.52
VPS35-211ENST00000569950 TRBV7-6A0A0J9YX20 115 aa5.53□□□□□ -1.52
VPS35-211ENST00000569950 ETDCA0A1B0GVM5 59 aa5.53□□□□□ -1.52
VPS35-211ENST00000569950 KRTAP29-1A8MX34 341 aaPredicted RBP5.53□□□□□ -1.52
VPS35-211ENST00000569950 LINC01600Q96MT4 127 aa5.53□□□□□ -1.52
VPS35-211ENST00000569950 KRTAP4-8Q9BYQ9 185 aa5.53□□□□□ -1.52
VPS35-211ENST00000569950 TSTD3H0UI37 97 aa5.52□□□□□ -1.53
VPS35-211ENST00000569950 KRTAP10-8P60410 259 aa5.52□□□□□ -1.53
VPS35-211ENST00000569950 HIGD2AQ9BW72 106 aa5.52□□□□□ -1.53
VPS35-211ENST00000569950 NHP2Q9NX24 153 aaKnown RBP5.52□□□□□ -1.53
VPS35-211ENST00000569950 ANAPC11Q9NYG5 84 aa5.52□□□□□ -1.53
VPS35-211ENST00000569950 A0A087X002 238 aa5.51□□□□□ -1.53
VPS35-211ENST00000569950 COX7BP24311 80 aa5.51□□□□□ -1.53
VPS35-211ENST00000569950 HINT1P49773 126 aaPredicted RBP5.51□□□□□ -1.53
VPS35-211ENST00000569950 SPRR4Q96PI1 79 aa5.51□□□□□ -1.53
VPS35-211ENST00000569950 PRO1854Q9UHT4 67 aa5.51□□□□□ -1.53
VPS35-211ENST00000569950 OXTP01178 125 aa5.5□□□□□ -1.53
VPS35-211ENST00000569950 LINC01547P58512 204 aaPredicted RBP5.5□□□□□ -1.53
VPS35-211ENST00000569950 KRTAP13-2Q52LG2 175 aa5.5□□□□□ -1.53
VPS35-211ENST00000569950 ST20-AS1Q8NBB2 130 aa5.5□□□□□ -1.53
VPS35-211ENST00000569950 H7C2G1 150 aa5.49□□□□□ -1.53
VPS35-211ENST00000569950 TSPAN13O95857 204 aa5.49□□□□□ -1.53
VPS35-211ENST00000569950 LINC00483Q53H64 154 aa5.49□□□□□ -1.53
VPS35-211ENST00000569950 PRR26Q8N8Z3 221 aa5.49□□□□□ -1.53
VPS35-211ENST00000569950 RAB37Q96AX2 223 aa5.49□□□□□ -1.53
VPS35-211ENST00000569950 FAM218AQ96MZ4 157 aa5.49□□□□□ -1.53
VPS35-211ENST00000569950 CBY1Q9Y3M2 126 aa5.49□□□□□ -1.53
VPS35-211ENST00000569950 TRIAP1O43715 76 aa5.48□□□□□ -1.53
VPS35-211ENST00000569950 LINC00575Q6W349 94 aa5.48□□□□□ -1.53
VPS35-211ENST00000569950 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.47□□□□□ -1.53
VPS35-211ENST00000569950 SPRR1BP22528 89 aa5.47□□□□□ -1.53
VPS35-211ENST00000569950 IGLV5-48A0A075B6I7 105 aa5.46□□□□□ -1.54
VPS35-211ENST00000569950 M0R143 59 aa5.46□□□□□ -1.54
VPS35-211ENST00000569950 FAM229BQ4G0N7 80 aa5.46□□□□□ -1.54
VPS35-211ENST00000569950 DHRS4-AS1Q9P1J3 65 aa5.46□□□□□ -1.54
VPS35-211ENST00000569950 SMIM29Q86T20 159 aa5.45□□□□□ -1.54
VPS35-211ENST00000569950 C3orf22Q8N5N4 141 aa5.45□□□□□ -1.54
VPS35-211ENST00000569950 SNHG12Q9BXW3 62 aa5.45□□□□□ -1.54
VPS35-211ENST00000569950 KRTAP9-2Q9BYQ4 174 aa5.45□□□□□ -1.54
VPS35-211ENST00000569950 GAGE2AQ6NT46 116 aa5.43□□□□□ -1.54
VPS35-211ENST00000569950 Q8N377 158 aa5.43□□□□□ -1.54
VPS35-211ENST00000569950 CLEC2BQ92478 149 aa5.43□□□□□ -1.54
VPS35-211ENST00000569950 KRTAP9-6A0A140TA67 174 aa5.42□□□□□ -1.54
VPS35-211ENST00000569950 hADV29S1A0JD25 119 aa5.42□□□□□ -1.54
VPS35-211ENST00000569950 TAX1BP3O14907 124 aa5.42□□□□□ -1.54
VPS35-211ENST00000569950 NAA38Q9BRA0 125 aaKnown RBP5.42□□□□□ -1.54
VPS35-211ENST00000569950 ZNF706Q9Y5V0 76 aaPredicted RBP5.42□□□□□ -1.54
VPS35-211ENST00000569950 HMCN2Q8NDA2 5059 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 131.2 ms