RNA–Protein interactions for RNA: ENST00000568755.1

VPS39-211, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-211ENST00000568755 MYMXA0A1B0GTQ4 84 aa5.57□□□□□ -1.52
VPS39-211ENST00000568755 DDTP30046 118 aa5.57□□□□□ -1.52
VPS39-211ENST00000568755 TSPEAR-AS2P59090 65 aa5.57□□□□□ -1.52
VPS39-211ENST00000568755 KRTAP19-2Q3LHN2 52 aa5.57□□□□□ -1.52
VPS39-211ENST00000568755 Q6ZRX8 168 aa5.57□□□□□ -1.52
VPS39-211ENST00000568755 KRTAP4-9Q9BYQ8 210 aa5.57□□□□□ -1.52
VPS39-211ENST00000568755 CRCT1Q9UGL9 99 aa5.57□□□□□ -1.52
VPS39-211ENST00000568755 S100A12P80511 92 aa5.56□□□□□ -1.52
VPS39-211ENST00000568755 MAP1LC3CQ9BXW4 147 aa5.56□□□□□ -1.52
VPS39-211ENST00000568755 YPEL4Q96NS1 127 aa5.55□□□□□ -1.52
VPS39-211ENST00000568755 IGLV6-57P01721 117 aa5.54□□□□□ -1.52
VPS39-211ENST00000568755 SPANXB1Q9NS25 103 aaPredicted RBP5.54□□□□□ -1.52
VPS39-211ENST00000568755 LEPROTO15243 131 aa5.53□□□□□ -1.52
VPS39-211ENST00000568755 C9orf153Q5TBE3 101 aa5.53□□□□□ -1.52
VPS39-211ENST00000568755 NDUFC2O95298 119 aa5.52□□□□□ -1.53
VPS39-211ENST00000568755 APOC3P02656 99 aa5.52□□□□□ -1.53
VPS39-211ENST00000568755 MT1HP80294 61 aa5.52□□□□□ -1.53
VPS39-211ENST00000568755 FLGP20930 4061 aaPredicted RBP5.52□□□□□ -1.53
VPS39-211ENST00000568755 TRAV23DV6A0A075B6W5 121 aa5.51□□□□□ -1.53
VPS39-211ENST00000568755 J3QQQ9 107 aa5.51□□□□□ -1.53
VPS39-211ENST00000568755 HSBP1O75506 76 aa5.51□□□□□ -1.53
VPS39-211ENST00000568755 SNAPINO95295 136 aa5.51□□□□□ -1.53
VPS39-211ENST00000568755 JOSD1Q15040 202 aaPredicted RBP5.51□□□□□ -1.53
VPS39-211ENST00000568755 ST20-AS1Q8NBB2 130 aa5.51□□□□□ -1.53
VPS39-211ENST00000568755 H0Y8G0 127 aa5.5□□□□□ -1.53
VPS39-211ENST00000568755 ZNF73O43830 326 aaPredicted RBP5.5□□□□□ -1.53
VPS39-211ENST00000568755 NMUP48645 174 aa5.5□□□□□ -1.53
VPS39-211ENST00000568755 S100A7L2Q5SY68 101 aa5.5□□□□□ -1.53
VPS39-211ENST00000568755 SOSTDC1Q6X4U4 206 aa5.5□□□□□ -1.53
VPS39-211ENST00000568755 SVBPQ8N300 66 aa5.5□□□□□ -1.53
VPS39-211ENST00000568755 MIEN1Q9BRT3 115 aa5.5□□□□□ -1.53
VPS39-211ENST00000568755 C5orf52A6NGY3 159 aa5.49□□□□□ -1.53
VPS39-211ENST00000568755 PLNP26678 52 aa5.49□□□□□ -1.53
VPS39-211ENST00000568755 LEPROTL1O95214 131 aa5.48□□□□□ -1.53
VPS39-211ENST00000568755 SPRR1BP22528 89 aa5.48□□□□□ -1.53
VPS39-211ENST00000568755 PCOTHQ58A44 107 aa5.48□□□□□ -1.53
VPS39-211ENST00000568755 DPM2O94777 84 aa5.47□□□□□ -1.53
VPS39-211ENST00000568755 LGALS3P17931 250 aaKnown RBP5.47□□□□□ -1.53
VPS39-211ENST00000568755 HERVK_113P61574 105 aa5.47□□□□□ -1.53
VPS39-211ENST00000568755 NDUFA5Q16718 116 aa5.47□□□□□ -1.53
VPS39-211ENST00000568755 ADAMTSL4-AS1Q5T5F5 129 aa5.47□□□□□ -1.53
VPS39-211ENST00000568755 LIMD2Q9BT23 127 aa5.47□□□□□ -1.53
VPS39-211ENST00000568755 IGLV8-61A0A075B6I0 122 aa5.46□□□□□ -1.54
VPS39-211ENST00000568755 A0A0J9YXY3 114 aa5.46□□□□□ -1.54
VPS39-211ENST00000568755 SERF1AO75920 110 aa5.46□□□□□ -1.54
VPS39-211ENST00000568755 CFC1BP0CG36 223 aa5.46□□□□□ -1.54
VPS39-211ENST00000568755 NPC2P61916 151 aa5.46□□□□□ -1.54
VPS39-211ENST00000568755 PMCHL2Q9BQD1 86 aa5.46□□□□□ -1.54
VPS39-211ENST00000568755 C9orf92A6NGG3 77 aa5.45□□□□□ -1.54
VPS39-211ENST00000568755 IGKCP01834 107 aa5.45□□□□□ -1.54
VPS39-211ENST00000568755 HRCT1Q6UXD1 115 aa5.45□□□□□ -1.54
VPS39-211ENST00000568755 TRGC2P03986 189 aa5.44□□□□□ -1.54
VPS39-211ENST00000568755 KRTAP10-6P60371 365 aaPredicted RBP5.44□□□□□ -1.54
VPS39-211ENST00000568755 HSPB8Q9UJY1 196 aa5.44□□□□□ -1.54
VPS39-211ENST00000568755 CBY1Q9Y3M2 126 aa5.44□□□□□ -1.54
VPS39-211ENST00000568755 E9PLD3 99 aa5.43□□□□□ -1.54
VPS39-211ENST00000568755 HINT1P49773 126 aaPredicted RBP5.43□□□□□ -1.54
VPS39-211ENST00000568755 SLC25A34Q6PIV7 304 aa5.43□□□□□ -1.54
VPS39-211ENST00000568755 LITAFQ99732 161 aa5.43□□□□□ -1.54
VPS39-211ENST00000568755 KRTAP4-2Q9BYR5 136 aa5.43□□□□□ -1.54
VPS39-211ENST00000568755 DHRS4-AS1Q9P1J3 65 aa5.43□□□□□ -1.54
VPS39-211ENST00000568755 FABP4P15090 132 aa5.42□□□□□ -1.54
VPS39-211ENST00000568755 LINC00308Q8TCZ7 52 aa5.42□□□□□ -1.54
VPS39-211ENST00000568755 SPANXCQ9NY87 97 aa5.42□□□□□ -1.54
VPS39-211ENST00000568755 LAMTOR3Q9UHA4 124 aa5.42□□□□□ -1.54
VPS39-211ENST00000568755 ELOF1P60002 83 aaKnown RBP5.41□□□□□ -1.54
VPS39-211ENST00000568755 CD164Q04900 197 aa5.41□□□□□ -1.54
VPS39-211ENST00000568755 LCE5AQ5TCM9 118 aa5.4□□□□□ -1.54
VPS39-211ENST00000568755 Q5XG85 94 aa5.4□□□□□ -1.54
VPS39-211ENST00000568755 OR13C6PQ8NH95 151 aa5.4□□□□□ -1.54
VPS39-211ENST00000568755 SPANXDQ9BXN6 97 aa5.4□□□□□ -1.54
VPS39-211ENST00000568755 KRTAP9-3Q9BYQ3 159 aa5.4□□□□□ -1.54
VPS39-211ENST00000568755 KRTAP4-11Q9BYQ6 195 aa5.4□□□□□ -1.54
VPS39-211ENST00000568755 TIMM17BO60830 172 aa5.39□□□□□ -1.55
VPS39-211ENST00000568755 Q1RN00 199 aa5.39□□□□□ -1.55
VPS39-211ENST00000568755 H7C2G1 150 aa5.38□□□□□ -1.55
VPS39-211ENST00000568755 COX7BP24311 80 aa5.38□□□□□ -1.55
VPS39-211ENST00000568755 C6orf99Q4VX62 202 aa5.38□□□□□ -1.55
VPS39-211ENST00000568755 C1orf195Q5TG92 126 aa5.38□□□□□ -1.55
VPS39-211ENST00000568755 PRO1933Q9H354 126 aa5.38□□□□□ -1.55
VPS39-211ENST00000568755 RPL37P61927 97 aaKnown RBP5.37□□□□□ -1.55
VPS39-211ENST00000568755 SMIM29Q86T20 159 aa5.37□□□□□ -1.55
VPS39-211ENST00000568755 TEX49A0A1B0GTD5 131 aa5.36□□□□□ -1.55
VPS39-211ENST00000568755 TAL2Q16559 108 aa5.36□□□□□ -1.55
VPS39-211ENST00000568755 DEFB105AQ8NG35 78 aa5.36□□□□□ -1.55
VPS39-211ENST00000568755 IGLV5-48A0A075B6I7 105 aa5.35□□□□□ -1.55
VPS39-211ENST00000568755 A0A0G2JQZ4 141 aa5.35□□□□□ -1.55
VPS39-211ENST00000568755 TRBV7-6A0A0J9YX20 115 aa5.35□□□□□ -1.55
VPS39-211ENST00000568755 SYS1-DBNDD2H3BUS1 97 aa5.35□□□□□ -1.55
VPS39-211ENST00000568755 AKR1D1P51857 326 aa5.35□□□□□ -1.55
VPS39-211ENST00000568755 LINC00518Q8N0U6 118 aa5.35□□□□□ -1.55
VPS39-211ENST00000568755 TTTY13Q9BZ97 58 aa5.35□□□□□ -1.55
VPS39-211ENST00000568755 ZNF815PA8K554 130 aa5.34□□□□□ -1.55
VPS39-211ENST00000568755 M0R2T5 61 aa5.34□□□□□ -1.55
VPS39-211ENST00000568755 LINC01545Q5VT33 79 aa5.34□□□□□ -1.55
VPS39-211ENST00000568755 COLCA2A8K830 154 aa5.33□□□□□ -1.56
VPS39-211ENST00000568755 A0A1B0GWB2 263 aa5.32□□□□□ -1.56
VPS39-211ENST00000568755 COX6B2Q6YFQ2 88 aa5.32□□□□□ -1.56
VPS39-211ENST00000568755 PET117Q6UWS5 81 aa5.3□□□□□ -1.56
VPS39-211ENST00000568755 SSPOA2VEC9 5147 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms