RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 S100A7L2Q5SY68 101 aa8.19□□□□□ -1.1
CLN3-235ENST00000568497 MUSTN1Q8IVN3 82 aa8.19□□□□□ -1.1
CLN3-235ENST00000568497 OR13C6PQ8NH95 151 aa8.19□□□□□ -1.1
CLN3-235ENST00000568497 PPDPFQ9H3Y8 114 aa8.19□□□□□ -1.1
CLN3-235ENST00000568497 KCNQ1DNQ9H478 68 aa8.19□□□□□ -1.1
CLN3-235ENST00000568497 ETDCA0A1B0GVM5 59 aa8.18□□□□□ -1.1
CLN3-235ENST00000568497 IGLV6-57P01721 117 aa8.18□□□□□ -1.1
CLN3-235ENST00000568497 SPRR1AP35321 89 aa8.18□□□□□ -1.1
CLN3-235ENST00000568497 KRTAP13-2Q52LG2 175 aa8.18□□□□□ -1.1
CLN3-235ENST00000568497 LINC00337Q8N6G1 96 aa8.18□□□□□ -1.1
CLN3-235ENST00000568497 SMCR5Q8TEV8 140 aa8.18□□□□□ -1.1
CLN3-235ENST00000568497 FSIP2Q5CZC0 6907 aa8.17□□□□□ -1.1
CLN3-235ENST00000568497 NDUFC2O95298 119 aa8.17□□□□□ -1.1
CLN3-235ENST00000568497 TRBV10-2A0A0K0K1G8 114 aa8.16□□□□□ -1.1
CLN3-235ENST00000568497 B5MCH6 92 aa8.16□□□□□ -1.1
CLN3-235ENST00000568497 HSBP1L1C9JCN9 74 aa8.16□□□□□ -1.1
CLN3-235ENST00000568497 C3orf22Q8N5N4 141 aa8.16□□□□□ -1.1
CLN3-235ENST00000568497 SPANXDQ9BXN6 97 aa8.16□□□□□ -1.1
CLN3-235ENST00000568497 SPANXCQ9NY87 97 aa8.16□□□□□ -1.1
CLN3-235ENST00000568497 PAM16Q9Y3D7 125 aa8.16□□□□□ -1.1
CLN3-235ENST00000568497 TRAV23DV6A0A075B6W5 121 aa8.15□□□□□ -1.1
CLN3-235ENST00000568497 TSPAN13O95857 204 aa8.15□□□□□ -1.1
CLN3-235ENST00000568497 S100A12P80511 92 aa8.15□□□□□ -1.1
CLN3-235ENST00000568497 C14orf144Q96I85 54 aa8.15□□□□□ -1.1
CLN3-235ENST00000568497 Q9BRP9 147 aa8.15□□□□□ -1.1
CLN3-235ENST00000568497 SPATA45Q537H7 98 aa8.12□□□□□ -1.11
CLN3-235ENST00000568497 ST20-AS1Q8NBB2 130 aa8.12□□□□□ -1.11
CLN3-235ENST00000568497 SPRR4Q96PI1 79 aa8.12□□□□□ -1.11
CLN3-235ENST00000568497 C12orf57Q99622 126 aa8.12□□□□□ -1.11
CLN3-235ENST00000568497 ZNF73O43830 326 aaPredicted RBP8.11□□□□□ -1.11
CLN3-235ENST00000568497 CRYGAP11844 174 aa8.11□□□□□ -1.11
CLN3-235ENST00000568497 TYMSOSQ8TAI1 123 aa8.11□□□□□ -1.11
CLN3-235ENST00000568497 COPS9Q8WXC6 57 aa8.11□□□□□ -1.11
CLN3-235ENST00000568497 A6NDN8 102 aa8.1□□□□□ -1.11
CLN3-235ENST00000568497 LCE2DQ5TA82 110 aaPredicted RBP8.1□□□□□ -1.11
CLN3-235ENST00000568497 GAGE2AQ6NT46 116 aa8.1□□□□□ -1.11
CLN3-235ENST00000568497 CBY1Q9Y3M2 126 aa8.1□□□□□ -1.11
CLN3-235ENST00000568497 COX8AP10176 69 aa8.09□□□□□ -1.11
CLN3-235ENST00000568497 JOSD1Q15040 202 aaPredicted RBP8.09□□□□□ -1.11
CLN3-235ENST00000568497 PYY3Q5JQD4 70 aa8.09□□□□□ -1.11
CLN3-235ENST00000568497 C6orf99Q4VX62 202 aa8.08□□□□□ -1.12
CLN3-235ENST00000568497 Q6ZRX8 168 aa8.08□□□□□ -1.12
CLN3-235ENST00000568497 A4D1N5 150 aa8.07□□□□□ -1.12
CLN3-235ENST00000568497 VAMP8Q9BV40 100 aa8.07□□□□□ -1.12
CLN3-235ENST00000568497 IFITM1P13164 125 aa8.06□□□□□ -1.12
CLN3-235ENST00000568497 RPL13AP40429 203 aaKnown RBP8.06□□□□□ -1.12
CLN3-235ENST00000568497 Q6ZVH6 145 aa8.06□□□□□ -1.12
CLN3-235ENST00000568497 C2orf91Q6ZV80 131 aa8.05□□□□□ -1.12
CLN3-235ENST00000568497 HIST1H4GQ99525 98 aa8.05□□□□□ -1.12
CLN3-235ENST00000568497 RETNLBQ9BQ08 111 aa8.05□□□□□ -1.12
CLN3-235ENST00000568497 IGLV9-49A0A0B4J1Y8 123 aa8.04□□□□□ -1.12
CLN3-235ENST00000568497 FAM229BQ4G0N7 80 aa8.04□□□□□ -1.12
CLN3-235ENST00000568497 LINC00518Q8N0U6 118 aa8.04□□□□□ -1.12
CLN3-235ENST00000568497 SMIM11BQ8TCY0 68 aa8.04□□□□□ -1.12
CLN3-235ENST00000568497 COX7BP24311 80 aa8.03□□□□□ -1.12
CLN3-235ENST00000568497 DEFB105AQ8NG35 78 aa8.02□□□□□ -1.13
CLN3-235ENST00000568497 H7C2G1 150 aa8.01□□□□□ -1.13
CLN3-235ENST00000568497 MOBPQ13875 183 aa8.01□□□□□ -1.13
CLN3-235ENST00000568497 LINC00304Q8N9R0 145 aa8.01□□□□□ -1.13
CLN3-235ENST00000568497 MUC17Q685J3 4493 aa8.01□□□□□ -1.13
CLN3-235ENST00000568497 HINT1P49773 126 aaPredicted RBP8□□□□□ -1.13
CLN3-235ENST00000568497 ELOF1P60002 83 aaKnown RBP8□□□□□ -1.13
CLN3-235ENST00000568497 LINC00483Q53H64 154 aa8□□□□□ -1.13
CLN3-235ENST00000568497 SLC25A34Q6PIV7 304 aa8□□□□□ -1.13
CLN3-235ENST00000568497 Q8NBF4 154 aa8□□□□□ -1.13
CLN3-235ENST00000568497 ZNF706Q9Y5V0 76 aaPredicted RBP8□□□□□ -1.13
CLN3-235ENST00000568497 DLEU1O43261 78 aa7.99□□□□□ -1.13
CLN3-235ENST00000568497 TRAV13-2A0A0B4J235 113 aa7.97□□□□□ -1.13
CLN3-235ENST00000568497 A0A0G2JQZ4 141 aa7.97□□□□□ -1.13
CLN3-235ENST00000568497 CFC1BP0CG36 223 aa7.96□□□□□ -1.14
CLN3-235ENST00000568497 CFC1P0CG37 223 aa7.96□□□□□ -1.14
CLN3-235ENST00000568497 LINC01547P58512 204 aaPredicted RBP7.96□□□□□ -1.14
CLN3-235ENST00000568497 C9orf153Q5TBE3 101 aa7.96□□□□□ -1.14
CLN3-235ENST00000568497 CDIP1Q9H305 208 aa7.96□□□□□ -1.14
CLN3-235ENST00000568497 FXYD2P54710 66 aa7.95□□□□□ -1.14
CLN3-235ENST00000568497 Q1RN00 199 aa7.95□□□□□ -1.14
CLN3-235ENST00000568497 PRO1933Q9H354 126 aa7.94□□□□□ -1.14
CLN3-235ENST00000568497 HIGD1BQ9P298 99 aa7.94□□□□□ -1.14
CLN3-235ENST00000568497 TAL2Q16559 108 aa7.93□□□□□ -1.14
CLN3-235ENST00000568497 HRCT1Q6UXD1 115 aa7.93□□□□□ -1.14
CLN3-235ENST00000568497 DHRS4-AS1Q9P1J3 65 aa7.93□□□□□ -1.14
CLN3-235ENST00000568497 A0A1B0GWB2 263 aa7.92□□□□□ -1.14
CLN3-235ENST00000568497 K7ERJ3 54 aa7.92□□□□□ -1.14
CLN3-235ENST00000568497 CEND1Q8N111 149 aa7.92□□□□□ -1.14
CLN3-235ENST00000568497 CTAG1AP78358 180 aa7.9□□□□□ -1.14
CLN3-235ENST00000568497 RAB37Q96AX2 223 aa7.9□□□□□ -1.14
CLN3-235ENST00000568497 TRBV7-6A0A0J9YX20 115 aa7.89□□□□□ -1.15
CLN3-235ENST00000568497 SMIM29Q86T20 159 aa7.89□□□□□ -1.15
CLN3-235ENST00000568497 SPRR1BP22528 89 aa7.88□□□□□ -1.15
CLN3-235ENST00000568497 LINC00575Q6W349 94 aa7.88□□□□□ -1.15
CLN3-235ENST00000568497 Q8N377 158 aa7.88□□□□□ -1.15
CLN3-235ENST00000568497 C4orf48Q5BLP8 95 aa7.87□□□□□ -1.15
CLN3-235ENST00000568497 FAM218AQ96MZ4 157 aa7.87□□□□□ -1.15
CLN3-235ENST00000568497 A0A0B4J2C4 111 aa7.85□□□□□ -1.15
CLN3-235ENST00000568497 VAMP3Q15836 100 aa7.85□□□□□ -1.15
CLN3-235ENST00000568497 Q6ZQY7 126 aa7.85□□□□□ -1.15
CLN3-235ENST00000568497 NHP2Q9NX24 153 aaKnown RBP7.85□□□□□ -1.15
CLN3-235ENST00000568497 UQCR10Q9UDW1 63 aa7.85□□□□□ -1.15
CLN3-235ENST00000568497 TEX49A0A1B0GTD5 131 aa7.84□□□□□ -1.15
CLN3-235ENST00000568497 HSD52Q0P140 79 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms